data_4M22 # _model_server_result.job_id S45rll0ZooH-laBw5GfK3Q _model_server_result.datetime_utc '2024-11-22 15:53:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4m22 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":202}' # _entry.id 4M22 # _exptl.entry_id 4M22 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 345.221 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-{4-[(2,4-dichlorophenoxy)acetyl]piperazin-1-yl}propan-1-one _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.29 _cell.angle_gamma 90 _cell.entry_id 4M22 _cell.length_a 70.906 _cell.length_b 83.457 _cell.length_c 86.924 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4M22 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,L 1 1 B,F,G,H,M 2 1 C,I,J,K,N 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B SG CYS 13 B CYS 12 1_555 G C18 22C . B 22C 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.832 ? covale ? covale2 C SG CYS 13 C CYS 12 1_555 J C18 22C . C 22C 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.831 ? metalc ? metalc1 A OG SER 18 A SER 17 1_555 D MG MG . A MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc2 D MG MG . A MG 201 1_555 E O1B GDP . A GDP 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? metalc ? metalc3 D MG MG . A MG 201 1_555 L O HOH . A HOH 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? metalc ? metalc4 D MG MG . A MG 201 1_555 L O HOH . A HOH 342 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc5 D MG MG . A MG 201 1_555 L O HOH . A HOH 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.978 ? metalc ? metalc6 D MG MG . A MG 201 1_555 L O HOH . A HOH 345 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? metalc ? metalc7 B OG SER 18 B SER 17 1_555 F MG MG . B MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? metalc ? metalc8 F MG MG . B MG 201 1_555 H O1B GDP . B GDP 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 4.377 ? metalc ? metalc9 F MG MG . B MG 201 1_555 H O3B GDP . B GDP 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc10 F MG MG . B MG 201 1_555 M O HOH . B HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? metalc ? metalc11 F MG MG . B MG 201 1_555 M O HOH . B HOH 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc12 F MG MG . B MG 201 1_555 M O HOH . B HOH 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.881 ? metalc ? metalc13 F MG MG . B MG 201 1_555 M O HOH . B HOH 363 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? metalc ? metalc14 C OG SER 18 C SER 17 1_555 I MG MG . C MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.98 ? metalc ? metalc15 I MG MG . C MG 201 1_555 K O1B GDP . C GDP 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 4.324 ? metalc ? metalc16 I MG MG . C MG 201 1_555 K O3B GDP . C GDP 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? metalc ? metalc17 I MG MG . C MG 201 1_555 N O HOH . C HOH 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.547 ? metalc ? metalc18 I MG MG . C MG 201 1_555 N O HOH . C HOH 335 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? metalc ? metalc19 I MG MG . C MG 201 1_555 N O HOH . C HOH 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? metalc ? metalc20 I MG MG . C MG 201 1_555 N O HOH . C HOH 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.824 ? # _chem_comp.formula 'C15 H18 Cl2 N2 O3' _chem_comp.formula_weight 345.221 _chem_comp.id 22C _chem_comp.mon_nstd_flag . _chem_comp.name 1-{4-[(2,4-dichlorophenoxy)acetyl]piperazin-1-yl}propan-1-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C21 N12 22C sing 1 n n C21 C20 22C sing 2 n n N12 C13 22C sing 3 n n N12 C11 22C sing 4 n n C13 C14 22C sing 5 n n C10 C11 22C sing 6 n n C10 O09 22C sing 7 n n C11 O22 22C doub 8 n n C06 C07 22C doub 9 n y C06 C04 22C sing 10 n y C07 C08 22C sing 11 n y C20 N15 22C sing 12 n n C18 C17 22C sing 13 n n N15 C14 22C sing 14 n n N15 C16 22C sing 15 n n O19 C16 22C doub 16 n n C16 C17 22C sing 17 n n CL2 C04 22C sing 18 n n C04 C03 22C doub 19 n y C08 O09 22C sing 20 n n C08 C02 22C doub 21 n y C03 C02 22C sing 22 n y C02 CL1 22C sing 23 n n C10 H1 22C sing 24 n n C10 H2 22C sing 25 n n C13 H3 22C sing 26 n n C13 H4 22C sing 27 n n C17 H5 22C sing 28 n n C17 H6 22C sing 29 n n C20 H7 22C sing 30 n n C20 H8 22C sing 31 n n C21 H9 22C sing 32 n n C21 H10 22C sing 33 n n C03 H11 22C sing 34 n n C06 H12 22C sing 35 n n C07 H13 22C sing 36 n n C14 H14 22C sing 37 n n C14 H15 22C sing 38 n n C18 H16 22C sing 39 n n C18 H17 22C sing 40 n n C18 H18 22C sing 41 n n # _atom_sites.entry_id 4M22 _atom_sites.fract_transf_matrix[1][1] 0.014103 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004937 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011982 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012189 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 MG A 1 201 200 MG MG . E 3 GDP A 1 202 220 GDP GDP . F 2 MG B 1 201 200 MG MG . G 4 22C B 1 202 210 22C LIG . H 3 GDP B 1 203 220 GDP GDP . I 2 MG C 1 201 200 MG MG . J 4 22C C 1 202 210 22C LIG . K 3 GDP C 1 203 220 GDP GDP . L 5 HOH A 1 301 4 HOH HOH . L 5 HOH A 2 302 11 HOH HOH . L 5 HOH A 3 303 19 HOH HOH . L 5 HOH A 4 304 24 HOH HOH . L 5 HOH A 5 305 25 HOH HOH . L 5 HOH A 6 306 27 HOH HOH . L 5 HOH A 7 307 29 HOH HOH . L 5 HOH A 8 308 30 HOH HOH . L 5 HOH A 9 309 32 HOH HOH . L 5 HOH A 10 310 37 HOH HOH . L 5 HOH A 11 311 40 HOH HOH . L 5 HOH A 12 312 41 HOH HOH . L 5 HOH A 13 313 42 HOH HOH . L 5 HOH A 14 314 49 HOH HOH . L 5 HOH A 15 315 53 HOH HOH . L 5 HOH A 16 316 55 HOH HOH . L 5 HOH A 17 317 58 HOH HOH . L 5 HOH A 18 318 60 HOH HOH . L 5 HOH A 19 319 62 HOH HOH . L 5 HOH A 20 320 65 HOH HOH . L 5 HOH A 21 321 67 HOH HOH . L 5 HOH A 22 322 70 HOH HOH . L 5 HOH A 23 323 72 HOH HOH . L 5 HOH A 24 324 73 HOH HOH . L 5 HOH A 25 325 77 HOH HOH . L 5 HOH A 26 326 85 HOH HOH . L 5 HOH A 27 327 92 HOH HOH . L 5 HOH A 28 328 95 HOH HOH . L 5 HOH A 29 329 98 HOH HOH . L 5 HOH A 30 330 102 HOH HOH . L 5 HOH A 31 331 107 HOH HOH . L 5 HOH A 32 332 112 HOH HOH . L 5 HOH A 33 333 115 HOH HOH . L 5 HOH A 34 334 116 HOH HOH . L 5 HOH A 35 335 117 HOH HOH . L 5 HOH A 36 336 120 HOH HOH . L 5 HOH A 37 337 123 HOH HOH . L 5 HOH A 38 338 127 HOH HOH . L 5 HOH A 39 339 128 HOH HOH . L 5 HOH A 40 340 131 HOH HOH . L 5 HOH A 41 341 132 HOH HOH . L 5 HOH A 42 342 133 HOH HOH . L 5 HOH A 43 343 135 HOH HOH . L 5 HOH A 44 344 139 HOH HOH . L 5 HOH A 45 345 142 HOH HOH . L 5 HOH A 46 346 146 HOH HOH . L 5 HOH A 47 347 152 HOH HOH . M 5 HOH B 1 301 1 HOH HOH . M 5 HOH B 2 302 2 HOH HOH . M 5 HOH B 3 303 3 HOH HOH . M 5 HOH B 4 304 5 HOH HOH . M 5 HOH B 5 305 6 HOH HOH . M 5 HOH B 6 306 7 HOH HOH . M 5 HOH B 7 307 8 HOH HOH . M 5 HOH B 8 308 9 HOH HOH . M 5 HOH B 9 309 10 HOH HOH . M 5 HOH B 10 310 12 HOH HOH . M 5 HOH B 11 311 14 HOH HOH . M 5 HOH B 12 312 15 HOH HOH . M 5 HOH B 13 313 17 HOH HOH . M 5 HOH B 14 314 18 HOH HOH . M 5 HOH B 15 315 20 HOH HOH . M 5 HOH B 16 316 21 HOH HOH . M 5 HOH B 17 317 26 HOH HOH . M 5 HOH B 18 318 28 HOH HOH . M 5 HOH B 19 319 31 HOH HOH . M 5 HOH B 20 320 33 HOH HOH . M 5 HOH B 21 321 34 HOH HOH . M 5 HOH B 22 322 35 HOH HOH . M 5 HOH B 23 323 39 HOH HOH . M 5 HOH B 24 324 43 HOH HOH . M 5 HOH B 25 325 44 HOH HOH . M 5 HOH B 26 326 46 HOH HOH . M 5 HOH B 27 327 47 HOH HOH . M 5 HOH B 28 328 51 HOH HOH . M 5 HOH B 29 329 54 HOH HOH . M 5 HOH B 30 330 56 HOH HOH . M 5 HOH B 31 331 57 HOH HOH . M 5 HOH B 32 332 59 HOH HOH . M 5 HOH B 33 333 61 HOH HOH . M 5 HOH B 34 334 66 HOH HOH . M 5 HOH B 35 335 68 HOH HOH . M 5 HOH B 36 336 71 HOH HOH . M 5 HOH B 37 337 75 HOH HOH . M 5 HOH B 38 338 76 HOH HOH . M 5 HOH B 39 339 78 HOH HOH . M 5 HOH B 40 340 83 HOH HOH . M 5 HOH B 41 341 84 HOH HOH . M 5 HOH B 42 342 87 HOH HOH . M 5 HOH B 43 343 89 HOH HOH . M 5 HOH B 44 344 94 HOH HOH . M 5 HOH B 45 345 97 HOH HOH . M 5 HOH B 46 346 99 HOH HOH . M 5 HOH B 47 347 100 HOH HOH . M 5 HOH B 48 348 103 HOH HOH . M 5 HOH B 49 349 106 HOH HOH . M 5 HOH B 50 350 108 HOH HOH . M 5 HOH B 51 351 110 HOH HOH . M 5 HOH B 52 352 111 HOH HOH . M 5 HOH B 53 353 113 HOH HOH . M 5 HOH B 54 354 119 HOH HOH . M 5 HOH B 55 355 121 HOH HOH . M 5 HOH B 56 356 125 HOH HOH . M 5 HOH B 57 357 126 HOH HOH . M 5 HOH B 58 358 130 HOH HOH . M 5 HOH B 59 359 134 HOH HOH . M 5 HOH B 60 360 138 HOH HOH . M 5 HOH B 61 361 140 HOH HOH . M 5 HOH B 62 362 141 HOH HOH . M 5 HOH B 63 363 143 HOH HOH . M 5 HOH B 64 364 144 HOH HOH . M 5 HOH B 65 365 149 HOH HOH . M 5 HOH B 66 366 150 HOH HOH . M 5 HOH B 67 367 151 HOH HOH . M 5 HOH B 68 368 154 HOH HOH . N 5 HOH C 1 301 13 HOH HOH . N 5 HOH C 2 302 16 HOH HOH . N 5 HOH C 3 303 22 HOH HOH . N 5 HOH C 4 304 23 HOH HOH . N 5 HOH C 5 305 36 HOH HOH . N 5 HOH C 6 306 38 HOH HOH . N 5 HOH C 7 307 45 HOH HOH . N 5 HOH C 8 308 48 HOH HOH . N 5 HOH C 9 309 50 HOH HOH . N 5 HOH C 10 310 52 HOH HOH . N 5 HOH C 11 311 63 HOH HOH . N 5 HOH C 12 312 64 HOH HOH . N 5 HOH C 13 313 69 HOH HOH . N 5 HOH C 14 314 74 HOH HOH . N 5 HOH C 15 315 79 HOH HOH . N 5 HOH C 16 316 80 HOH HOH . N 5 HOH C 17 317 81 HOH HOH . N 5 HOH C 18 318 82 HOH HOH . N 5 HOH C 19 319 86 HOH HOH . N 5 HOH C 20 320 88 HOH HOH . N 5 HOH C 21 321 90 HOH HOH . N 5 HOH C 22 322 91 HOH HOH . N 5 HOH C 23 323 93 HOH HOH . N 5 HOH C 24 324 96 HOH HOH . N 5 HOH C 25 325 101 HOH HOH . N 5 HOH C 26 326 104 HOH HOH . N 5 HOH C 27 327 105 HOH HOH . N 5 HOH C 28 328 109 HOH HOH . N 5 HOH C 29 329 114 HOH HOH . N 5 HOH C 30 330 118 HOH HOH . N 5 HOH C 31 331 122 HOH HOH . N 5 HOH C 32 332 124 HOH HOH . N 5 HOH C 33 333 129 HOH HOH . N 5 HOH C 34 334 136 HOH HOH . N 5 HOH C 35 335 137 HOH HOH . N 5 HOH C 36 336 145 HOH HOH . N 5 HOH C 37 337 147 HOH HOH . N 5 HOH C 38 338 148 HOH HOH . N 5 HOH C 39 339 153 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 22C . . . J 4 29.673 13.718 23.128 1 51.28 ? C10 22C 202 C 1 HETATM 2 N N12 22C . . . J 4 28.167 13.004 25.181 1 44.84 ? N12 22C 202 C 1 HETATM 3 C C13 22C . . . J 4 27.268 12.254 24.352 1 43.35 ? C13 22C 202 C 1 HETATM 4 C C17 22C . . . J 4 25.602 9.739 28.211 1 43.77 ? C17 22C 202 C 1 HETATM 5 C C20 22C . . . J 4 27.748 11.527 27.032 1 42.29 ? C20 22C 202 C 1 HETATM 6 C C21 22C . . . J 4 27.804 12.949 26.568 1 43.16 ? C21 22C 202 C 1 HETATM 7 CL CL1 22C . . . J 4 30.113 9.635 22.419 1 65.77 ? CL1 22C 202 C 1 HETATM 8 C C02 22C . . . J 4 30.418 10.752 21.145 1 55.6 ? C02 22C 202 C 1 HETATM 9 C C03 22C . . . J 4 30.554 10.286 19.855 1 56.02 ? C03 22C 202 C 1 HETATM 10 C C04 22C . . . J 4 30.795 11.177 18.842 1 56.36 ? C04 22C 202 C 1 HETATM 11 CL CL2 22C . . . J 4 30.966 10.591 17.218 1 144.42 ? CL2 22C 202 C 1 HETATM 12 C C06 22C . . . J 4 30.901 12.541 19.117 1 56.2 ? C06 22C 202 C 1 HETATM 13 C C07 22C . . . J 4 30.764 13.019 20.425 1 55.79 ? C07 22C 202 C 1 HETATM 14 C C08 22C . . . J 4 30.518 12.136 21.426 1 55.2 ? C08 22C 202 C 1 HETATM 15 O O09 22C . . . J 4 30.384 12.549 22.728 1 53.72 ? O09 22C 202 C 1 HETATM 16 C C11 22C . . . J 4 29.355 13.731 24.607 1 47.97 ? C11 22C 202 C 1 HETATM 17 C C14 22C . . . J 4 27.172 10.827 24.791 1 42.1 ? C14 22C 202 C 1 HETATM 18 N N15 22C . . . J 4 26.902 10.715 26.199 1 41.85 ? N15 22C 202 C 1 HETATM 19 C C16 22C . . . J 4 25.867 9.839 26.722 1 41.67 ? C16 22C 202 C 1 HETATM 20 C C18 22C . . . J 4 24.158 9.685 28.665 1 44.96 ? C18 22C 202 C 1 HETATM 21 O O19 22C . . . J 4 25.193 9.18 25.946 1 39.82 ? O19 22C 202 C 1 HETATM 22 O O22 22C . . . J 4 30.109 14.35 25.384 1 47.85 ? O22 22C 202 C 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 22 #