data_4M2K # _model_server_result.job_id FZ3adaUIFNi6VEhDwmaORg _model_server_result.datetime_utc '2024-11-22 06:49:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4m2k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 4M2K # _exptl.entry_id 4M2K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 247.142 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "PYRIDOXAL-5'-PHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4M2K _cell.length_a 132.802 _cell.length_b 132.802 _cell.length_c 58.879 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4M2K _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_555 -y,-x,-z+1/2 0 -1 0 -1 0 0 0 0 -1 0 0 29.4395 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C8 H10 N O6 P' _chem_comp.formula_weight 247.142 _chem_comp.id PLP _chem_comp.mon_nstd_flag . _chem_comp.name "PYRIDOXAL-5'-PHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'VITAMIN B6 Phosphate' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 PLP doub 260 n y N1 C6 PLP sing 261 n y C2 C2A PLP sing 262 n n C2 C3 PLP sing 263 n y C2A H2A1 PLP sing 264 n n C2A H2A2 PLP sing 265 n n C2A H2A3 PLP sing 266 n n C3 O3 PLP sing 267 n n C3 C4 PLP doub 268 n y O3 HO3 PLP sing 269 n n C4 C4A PLP sing 270 n n C4 C5 PLP sing 271 n y C4A O4A PLP doub 272 n n C4A H4A PLP sing 273 n n C5 C6 PLP doub 274 n y C5 C5A PLP sing 275 n n C6 H6 PLP sing 276 n n C5A O4P PLP sing 277 n n C5A H5A1 PLP sing 278 n n C5A H5A2 PLP sing 279 n n O4P P PLP sing 280 n n P O1P PLP doub 281 n n P O2P PLP sing 282 n n P O3P PLP sing 283 n n O2P HOP2 PLP sing 284 n n O3P HOP3 PLP sing 285 n n # _atom_sites.entry_id 4M2K _atom_sites.fract_transf_matrix[1][1] 0.00753 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00753 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016984 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PLP A 1 401 396 PLP PLP . C 3 HOH A 1 501 2 HOH HOH . C 3 HOH A 2 502 3 HOH HOH . C 3 HOH A 3 503 4 HOH HOH . C 3 HOH A 4 504 5 HOH HOH . C 3 HOH A 5 505 6 HOH HOH . C 3 HOH A 6 506 7 HOH HOH . C 3 HOH A 7 507 8 HOH HOH . C 3 HOH A 8 508 9 HOH HOH . C 3 HOH A 9 509 10 HOH HOH . C 3 HOH A 10 510 11 HOH HOH . C 3 HOH A 11 511 12 HOH HOH . C 3 HOH A 12 512 13 HOH HOH . C 3 HOH A 13 513 14 HOH HOH . C 3 HOH A 14 514 15 HOH HOH . C 3 HOH A 15 515 16 HOH HOH . C 3 HOH A 16 516 17 HOH HOH . C 3 HOH A 17 517 18 HOH HOH . C 3 HOH A 18 518 19 HOH HOH . C 3 HOH A 19 519 20 HOH HOH . C 3 HOH A 20 520 21 HOH HOH . C 3 HOH A 21 521 22 HOH HOH . C 3 HOH A 22 522 23 HOH HOH . C 3 HOH A 23 523 24 HOH HOH . C 3 HOH A 24 524 25 HOH HOH . C 3 HOH A 25 525 26 HOH HOH . C 3 HOH A 26 526 27 HOH HOH . C 3 HOH A 27 527 28 HOH HOH . C 3 HOH A 28 528 29 HOH HOH . C 3 HOH A 29 529 30 HOH HOH . C 3 HOH A 30 530 31 HOH HOH . C 3 HOH A 31 531 32 HOH HOH . C 3 HOH A 32 532 33 HOH HOH . C 3 HOH A 33 533 34 HOH HOH . C 3 HOH A 34 534 35 HOH HOH . C 3 HOH A 35 535 36 HOH HOH . C 3 HOH A 36 536 37 HOH HOH . C 3 HOH A 37 537 38 HOH HOH . C 3 HOH A 38 538 39 HOH HOH . C 3 HOH A 39 539 40 HOH HOH . C 3 HOH A 40 540 41 HOH HOH . C 3 HOH A 41 541 42 HOH HOH . C 3 HOH A 42 542 43 HOH HOH . C 3 HOH A 43 543 44 HOH HOH . C 3 HOH A 44 544 45 HOH HOH . C 3 HOH A 45 545 46 HOH HOH . C 3 HOH A 46 546 47 HOH HOH . C 3 HOH A 47 547 48 HOH HOH . C 3 HOH A 48 548 49 HOH HOH . C 3 HOH A 49 549 50 HOH HOH . C 3 HOH A 50 550 51 HOH HOH . C 3 HOH A 51 551 52 HOH HOH . C 3 HOH A 52 552 53 HOH HOH . C 3 HOH A 53 553 54 HOH HOH . C 3 HOH A 54 554 55 HOH HOH . C 3 HOH A 55 555 56 HOH HOH . C 3 HOH A 56 556 57 HOH HOH . C 3 HOH A 57 557 58 HOH HOH . C 3 HOH A 58 558 59 HOH HOH . C 3 HOH A 59 559 60 HOH HOH . C 3 HOH A 60 560 61 HOH HOH . C 3 HOH A 61 561 62 HOH HOH . C 3 HOH A 62 562 63 HOH HOH . C 3 HOH A 63 563 64 HOH HOH . C 3 HOH A 64 564 65 HOH HOH . C 3 HOH A 65 565 66 HOH HOH . C 3 HOH A 66 566 67 HOH HOH . C 3 HOH A 67 567 68 HOH HOH . C 3 HOH A 68 568 69 HOH HOH . C 3 HOH A 69 569 70 HOH HOH . C 3 HOH A 70 570 71 HOH HOH . C 3 HOH A 71 571 72 HOH HOH . C 3 HOH A 72 572 73 HOH HOH . C 3 HOH A 73 573 74 HOH HOH . C 3 HOH A 74 574 75 HOH HOH . C 3 HOH A 75 575 76 HOH HOH . C 3 HOH A 76 576 77 HOH HOH . C 3 HOH A 77 577 78 HOH HOH . C 3 HOH A 78 578 79 HOH HOH . C 3 HOH A 79 579 80 HOH HOH . C 3 HOH A 80 580 81 HOH HOH . C 3 HOH A 81 581 82 HOH HOH . C 3 HOH A 82 582 83 HOH HOH . C 3 HOH A 83 583 84 HOH HOH . C 3 HOH A 84 584 85 HOH HOH . C 3 HOH A 85 585 86 HOH HOH . C 3 HOH A 86 586 87 HOH HOH . C 3 HOH A 87 587 88 HOH HOH . C 3 HOH A 88 588 89 HOH HOH . C 3 HOH A 89 589 90 HOH HOH . C 3 HOH A 90 590 91 HOH HOH . C 3 HOH A 91 591 92 HOH HOH . C 3 HOH A 92 592 93 HOH HOH . C 3 HOH A 93 593 94 HOH HOH . C 3 HOH A 94 594 95 HOH HOH . C 3 HOH A 95 595 96 HOH HOH . C 3 HOH A 96 596 97 HOH HOH . C 3 HOH A 97 597 98 HOH HOH . C 3 HOH A 98 598 99 HOH HOH . C 3 HOH A 99 599 100 HOH HOH . C 3 HOH A 100 600 101 HOH HOH . C 3 HOH A 101 601 102 HOH HOH . C 3 HOH A 102 602 103 HOH HOH . C 3 HOH A 103 603 104 HOH HOH . C 3 HOH A 104 604 105 HOH HOH . C 3 HOH A 105 605 106 HOH HOH . C 3 HOH A 106 606 107 HOH HOH . C 3 HOH A 107 607 108 HOH HOH . C 3 HOH A 108 608 109 HOH HOH . C 3 HOH A 109 609 110 HOH HOH . C 3 HOH A 110 610 111 HOH HOH . C 3 HOH A 111 611 112 HOH HOH . C 3 HOH A 112 612 113 HOH HOH . C 3 HOH A 113 613 114 HOH HOH . C 3 HOH A 114 614 115 HOH HOH . C 3 HOH A 115 615 116 HOH HOH . C 3 HOH A 116 616 117 HOH HOH . C 3 HOH A 117 617 118 HOH HOH . C 3 HOH A 118 618 119 HOH HOH . C 3 HOH A 119 619 120 HOH HOH . C 3 HOH A 120 620 121 HOH HOH . C 3 HOH A 121 621 122 HOH HOH . C 3 HOH A 122 622 123 HOH HOH . C 3 HOH A 123 623 124 HOH HOH . C 3 HOH A 124 624 125 HOH HOH . C 3 HOH A 125 625 126 HOH HOH . C 3 HOH A 126 626 127 HOH HOH . C 3 HOH A 127 627 128 HOH HOH . C 3 HOH A 128 628 129 HOH HOH . C 3 HOH A 129 629 130 HOH HOH . C 3 HOH A 130 630 131 HOH HOH . C 3 HOH A 131 631 132 HOH HOH . C 3 HOH A 132 632 133 HOH HOH . C 3 HOH A 133 633 134 HOH HOH . C 3 HOH A 134 634 135 HOH HOH . C 3 HOH A 135 635 136 HOH HOH . C 3 HOH A 136 636 137 HOH HOH . C 3 HOH A 137 637 138 HOH HOH . C 3 HOH A 138 638 139 HOH HOH . C 3 HOH A 139 639 140 HOH HOH . C 3 HOH A 140 640 141 HOH HOH . C 3 HOH A 141 641 142 HOH HOH . C 3 HOH A 142 642 143 HOH HOH . C 3 HOH A 143 643 144 HOH HOH . C 3 HOH A 144 644 145 HOH HOH . C 3 HOH A 145 645 146 HOH HOH . C 3 HOH A 146 646 147 HOH HOH . C 3 HOH A 147 647 148 HOH HOH . C 3 HOH A 148 648 149 HOH HOH . C 3 HOH A 149 649 150 HOH HOH . C 3 HOH A 150 650 151 HOH HOH . C 3 HOH A 151 651 152 HOH HOH . C 3 HOH A 152 652 153 HOH HOH . C 3 HOH A 153 653 154 HOH HOH . C 3 HOH A 154 654 155 HOH HOH . C 3 HOH A 155 655 156 HOH HOH . C 3 HOH A 156 656 157 HOH HOH . C 3 HOH A 157 657 158 HOH HOH . C 3 HOH A 158 658 159 HOH HOH . C 3 HOH A 159 659 160 HOH HOH . C 3 HOH A 160 660 161 HOH HOH . C 3 HOH A 161 661 162 HOH HOH . C 3 HOH A 162 662 163 HOH HOH . C 3 HOH A 163 663 164 HOH HOH . C 3 HOH A 164 664 165 HOH HOH . C 3 HOH A 165 665 166 HOH HOH . C 3 HOH A 166 666 167 HOH HOH . C 3 HOH A 167 667 168 HOH HOH . C 3 HOH A 168 668 169 HOH HOH . C 3 HOH A 169 669 170 HOH HOH . C 3 HOH A 170 670 171 HOH HOH . C 3 HOH A 171 671 172 HOH HOH . C 3 HOH A 172 672 173 HOH HOH . C 3 HOH A 173 673 174 HOH HOH . C 3 HOH A 174 674 175 HOH HOH . C 3 HOH A 175 675 176 HOH HOH . C 3 HOH A 176 676 177 HOH HOH . C 3 HOH A 177 677 178 HOH HOH . C 3 HOH A 178 678 179 HOH HOH . C 3 HOH A 179 679 180 HOH HOH . C 3 HOH A 180 680 181 HOH HOH . C 3 HOH A 181 681 182 HOH HOH . C 3 HOH A 182 682 183 HOH HOH . C 3 HOH A 183 683 184 HOH HOH . C 3 HOH A 184 684 185 HOH HOH . C 3 HOH A 185 685 186 HOH HOH . C 3 HOH A 186 686 187 HOH HOH . C 3 HOH A 187 687 188 HOH HOH . C 3 HOH A 188 688 189 HOH HOH . C 3 HOH A 189 689 190 HOH HOH . C 3 HOH A 190 690 191 HOH HOH . C 3 HOH A 191 691 192 HOH HOH . C 3 HOH A 192 692 193 HOH HOH . C 3 HOH A 193 693 194 HOH HOH . C 3 HOH A 194 694 195 HOH HOH . C 3 HOH A 195 695 196 HOH HOH . C 3 HOH A 196 696 197 HOH HOH . C 3 HOH A 197 697 198 HOH HOH . C 3 HOH A 198 698 199 HOH HOH . C 3 HOH A 199 699 200 HOH HOH . C 3 HOH A 200 700 201 HOH HOH . C 3 HOH A 201 701 202 HOH HOH . C 3 HOH A 202 702 203 HOH HOH . C 3 HOH A 203 703 204 HOH HOH . C 3 HOH A 204 704 205 HOH HOH . C 3 HOH A 205 705 206 HOH HOH . C 3 HOH A 206 706 207 HOH HOH . C 3 HOH A 207 707 208 HOH HOH . C 3 HOH A 208 708 209 HOH HOH . C 3 HOH A 209 709 210 HOH HOH . C 3 HOH A 210 710 211 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 PLP . . . B 2 17.478 -38.192 11.239 1 24.33 ? N1 PLP 401 A 1 HETATM 2 C C2 PLP . . . B 2 16.778 -38.566 10.136 1 25.4 ? C2 PLP 401 A 1 HETATM 3 C C2A PLP . . . B 2 16.082 -39.897 10.03 1 24.72 ? C2A PLP 401 A 1 HETATM 4 C C3 PLP . . . B 2 16.657 -37.628 9.011 1 26.8 ? C3 PLP 401 A 1 HETATM 5 O O3 PLP . . . B 2 15.928 -37.968 7.906 1 28.31 ? O3 PLP 401 A 1 HETATM 6 C C4 PLP . . . B 2 17.34 -36.316 9.156 1 26.64 ? C4 PLP 401 A 1 HETATM 7 C C4A PLP . . . B 2 17.308 -35.321 8.077 1 30.51 ? C4A PLP 401 A 1 HETATM 8 O O4A PLP . . . B 2 17.596 -35.725 6.955 1 41.87 ? O4A PLP 401 A 1 HETATM 9 C C5 PLP . . . B 2 18.068 -36.019 10.407 1 23.73 ? C5 PLP 401 A 1 HETATM 10 C C6 PLP . . . B 2 18.108 -37.013 11.377 1 23.13 ? C6 PLP 401 A 1 HETATM 11 C C5A PLP . . . B 2 18.805 -34.701 10.553 1 22.79 ? C5A PLP 401 A 1 HETATM 12 O O4P PLP . . . B 2 17.945 -33.564 10.323 1 22.04 ? O4P PLP 401 A 1 HETATM 13 P P PLP . . . B 2 18.077 -32.24 11.206 1 21.34 ? P PLP 401 A 1 HETATM 14 O O1P PLP . . . B 2 19.551 -32.019 11.439 1 19.41 ? O1P PLP 401 A 1 HETATM 15 O O2P PLP . . . B 2 17.362 -32.546 12.495 1 20.12 ? O2P PLP 401 A 1 HETATM 16 O O3P PLP . . . B 2 17.42 -31.199 10.321 1 20.44 ? O3P PLP 401 A 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 16 #