data_4M2S # _model_server_result.job_id E5vL6MoV_foSTyhsnFV5HQ _model_server_result.datetime_utc '2024-12-02 13:29:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4m2s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":6001}' # _entry.id 4M2S # _exptl.entry_id 4M2S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 687.413 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4R,11R,18R)-4,11,18-tri(propan-2-yl)-6,13,20-triselena-3,10,17,22,23,24-hexaazatetracyclo[17.2.1.1~5,8~.1~12,15~]tetracosa-1(21),5(24),7,12(23),14,19(22)-hexaene-2,9,16-trione _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4M2S _cell.length_a 96.629 _cell.length_b 115.09 _cell.length_c 374.204 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4M2S _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C 1 1 B,D 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C24 H30 N6 O3 Se3' _chem_comp.formula_weight 687.413 _chem_comp.id 0JZ _chem_comp.mon_nstd_flag . _chem_comp.name (4R,11R,18R)-4,11,18-tri(propan-2-yl)-6,13,20-triselena-3,10,17,22,23,24-hexaazatetracyclo[17.2.1.1~5,8~.1~12,15~]tetracosa-1(21),5(24),7,12(23),14,19(22)-hexaene-2,9,16-trione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms cyclic-tris-(R)-valineselenazole;QZ59-RRR # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C05 SE1 0JZ sing 1 n y SE1 C07 0JZ sing 2 n y C14 SE2 0JZ sing 3 n y C12 SE2 0JZ sing 4 n y SE3 C19 0JZ sing 5 n y SE3 C21 0JZ sing 6 n y N22 C01 0JZ sing 7 n y C21 C01 0JZ doub 8 n y C01 C02 0JZ sing 9 n n N03 C02 0JZ sing 10 n n C02 O25 0JZ doub 11 n n N03 C04 0JZ sing 12 n n N03 HN03 0JZ sing 13 n n C28 C04 0JZ sing 14 n n C04 C05 0JZ sing 15 n n C04 H04 0JZ sing 16 n n C05 N24 0JZ doub 17 n y C08 C07 0JZ doub 18 n y C07 H07 0JZ sing 19 n n N24 C08 0JZ sing 20 n y C08 C09 0JZ sing 21 n n N10 C09 0JZ sing 22 n n C09 O26 0JZ doub 23 n n C11 N10 0JZ sing 24 n n N10 HN10 0JZ sing 25 n n C31 C11 0JZ sing 26 n n C12 C11 0JZ sing 27 n n C11 H11 0JZ sing 28 n n N23 C12 0JZ doub 29 n y C15 C14 0JZ doub 30 n y C14 H14 0JZ sing 31 n n C16 C15 0JZ sing 32 n n C15 N23 0JZ sing 33 n y N17 C16 0JZ sing 34 n n O27 C16 0JZ doub 35 n n C18 N17 0JZ sing 36 n n N17 HN17 0JZ sing 37 n n C34 C18 0JZ sing 38 n n C18 C19 0JZ sing 39 n n C18 H18 0JZ sing 40 n n C19 N22 0JZ doub 41 n y C21 H21 0JZ sing 42 n n C29 C28 0JZ sing 43 n n C28 C30 0JZ sing 44 n n C28 H28 0JZ sing 45 n n C29 H29 0JZ sing 46 n n C29 H29A 0JZ sing 47 n n C29 H29B 0JZ sing 48 n n C30 H30 0JZ sing 49 n n C30 H30A 0JZ sing 50 n n C30 H30B 0JZ sing 51 n n C32 C31 0JZ sing 52 n n C33 C31 0JZ sing 53 n n C31 H31 0JZ sing 54 n n C32 H32 0JZ sing 55 n n C32 H32A 0JZ sing 56 n n C32 H32B 0JZ sing 57 n n C33 H33 0JZ sing 58 n n C33 H33A 0JZ sing 59 n n C33 H33B 0JZ sing 60 n n C36 C34 0JZ sing 61 n n C35 C34 0JZ sing 62 n n C34 H34 0JZ sing 63 n n C35 H35 0JZ sing 64 n n C35 H35A 0JZ sing 65 n n C35 H35B 0JZ sing 66 n n C36 H36 0JZ sing 67 n n C36 H36A 0JZ sing 68 n n C36 H36B 0JZ sing 69 n n # _atom_sites.entry_id 4M2S _atom_sites.fract_transf_matrix[1][1] 0.010349 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008689 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002672 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 0JZ A 1 6001 6001 0JZ 0JZ . D 2 0JZ B 1 6002 6002 0JZ 0JZ . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 SE SE1 0JZ . . . C 2 14.631 57.145 2.032 1 476.56 ? SE1 0JZ 6001 A 1 HETATM 2 SE SE2 0JZ . . . C 2 23.012 54.062 1.963 1 517.27 ? SE2 0JZ 6001 A 1 HETATM 3 SE SE3 0JZ . . . C 2 17.16 51.043 -3.73 1 487.93 ? SE3 0JZ 6001 A 1 HETATM 4 C C01 0JZ . . . C 2 16.233 53.068 -2.263 1 233.97 ? C01 0JZ 6001 A 1 HETATM 5 C C02 0JZ . . . C 2 15.422 54.071 -1.444 1 231.07 ? C02 0JZ 6001 A 1 HETATM 6 N N03 0JZ . . . C 2 15.535 55.517 -1.736 1 228.37 ? N03 0JZ 6001 A 1 HETATM 7 C C04 0JZ . . . C 2 14.82 56.557 -1.011 1 227.44 ? C04 0JZ 6001 A 1 HETATM 8 C C05 0JZ . . . C 2 15.452 56.72 0.364 1 229.15 ? C05 0JZ 6001 A 1 HETATM 9 C C07 0JZ . . . C 2 16.331 57.089 2.945 1 235.75 ? C07 0JZ 6001 A 1 HETATM 10 C C08 0JZ . . . C 2 17.289 56.763 1.942 1 237.46 ? C08 0JZ 6001 A 1 HETATM 11 C C09 0JZ . . . C 2 18.791 56.638 2.266 1 239.63 ? C09 0JZ 6001 A 1 HETATM 12 N N10 0JZ . . . C 2 19.772 56.621 1.18 1 236.77 ? N10 0JZ 6001 A 1 HETATM 13 C C11 0JZ . . . C 2 21.209 56.539 1.467 1 227.26 ? C11 0JZ 6001 A 1 HETATM 14 C C12 0JZ . . . C 2 21.733 55.186 1.069 1 218.34 ? C12 0JZ 6001 A 1 HETATM 15 C C14 0JZ . . . C 2 22.931 52.697 0.623 1 194.39 ? C14 0JZ 6001 A 1 HETATM 16 C C15 0JZ . . . C 2 21.98 53.22 -0.341 1 206.22 ? C15 0JZ 6001 A 1 HETATM 17 C C16 0JZ . . . C 2 21.565 52.512 -1.606 1 216.69 ? C16 0JZ 6001 A 1 HETATM 18 N N17 0JZ . . . C 2 20.409 53.06 -2.26 1 232.79 ? N17 0JZ 6001 A 1 HETATM 19 C C18 0JZ . . . C 2 19.793 52.611 -3.475 1 239.62 ? C18 0JZ 6001 A 1 HETATM 20 C C19 0JZ . . . C 2 18.332 52.426 -3.189 1 238.38 ? C19 0JZ 6001 A 1 HETATM 21 C C21 0JZ . . . C 2 15.679 51.869 -2.831 1 234.81 ? C21 0JZ 6001 A 1 HETATM 22 N N22 0JZ . . . C 2 17.582 53.32 -2.466 1 235.88 ? N22 0JZ 6001 A 1 HETATM 23 N N23 0JZ . . . C 2 21.405 54.492 -0.077 1 211.52 ? N23 0JZ 6001 A 1 HETATM 24 N N24 0JZ . . . C 2 16.817 56.591 0.605 1 235.19 ? N24 0JZ 6001 A 1 HETATM 25 O O25 0JZ . . . C 2 14.704 53.667 -0.555 1 230.29 ? O25 0JZ 6001 A 1 HETATM 26 O O26 0JZ . . . C 2 19.156 56.564 3.438 1 240.73 ? O26 0JZ 6001 A 1 HETATM 27 O O27 0JZ . . . C 2 22.189 51.547 -2.03 1 210.2 ? O27 0JZ 6001 A 1 HETATM 28 C C28 0JZ . . . C 2 14.74 57.893 -1.804 1 205.67 ? C28 0JZ 6001 A 1 HETATM 29 C C29 0JZ . . . C 2 14.025 57.791 -3.16 1 201.85 ? C29 0JZ 6001 A 1 HETATM 30 C C30 0JZ . . . C 2 16.046 58.617 -1.926 1 210.94 ? C30 0JZ 6001 A 1 HETATM 31 C C31 0JZ . . . C 2 21.902 57.725 0.768 1 224.72 ? C31 0JZ 6001 A 1 HETATM 32 C C32 0JZ . . . C 2 21.312 59.015 1.286 1 224.53 ? C32 0JZ 6001 A 1 HETATM 33 C C33 0JZ . . . C 2 21.822 57.636 -0.728 1 222.24 ? C33 0JZ 6001 A 1 HETATM 34 C C34 0JZ . . . C 2 19.974 53.743 -4.507 1 241.95 ? C34 0JZ 6001 A 1 HETATM 35 C C35 0JZ . . . C 2 21.358 54.316 -4.657 1 241.84 ? C35 0JZ 6001 A 1 HETATM 36 C C36 0JZ . . . C 2 19.143 53.62 -5.791 1 180.28 ? C36 0JZ 6001 A 1 # _model_server_stats.io_time_ms 119 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 57 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 36 #