data_4M2S
#
_model_server_result.job_id            WWRQP5EkaECDxsdYAQojMg 
_model_server_result.datetime_utc      '2024-12-02 13:32:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4m2s 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":6002}' 
#
_entry.id    4M2S 
#
_exptl.entry_id    4M2S 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              687.413 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (4R,11R,18R)-4,11,18-tri(propan-2-yl)-6,13,20-triselena-3,10,17,22,23,24-hexaazatetracyclo[17.2.1.1~5,8~.1~12,15~]tetracosa-1(21),5(24),7,12(23),14,19(22)-hexaene-2,9,16-trione 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4M2S 
_cell.length_a            96.629 
_cell.length_b            115.09 
_cell.length_c            374.204 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4M2S 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C 1 1 
B,D 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C24 H30 N6 O3 Se3' 
_chem_comp.formula_weight    687.413 
_chem_comp.id                0JZ 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (4R,11R,18R)-4,11,18-tri(propan-2-yl)-6,13,20-triselena-3,10,17,22,23,24-hexaazatetracyclo[17.2.1.1~5,8~.1~12,15~]tetracosa-1(21),5(24),7,12(23),14,19(22)-hexaene-2,9,16-trione 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     cyclic-tris-(R)-valineselenazole;QZ59-RRR 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C05 SE1 0JZ sing 1 n y 
SE1 C07 0JZ sing 2 n y 
C14 SE2 0JZ sing 3 n y 
C12 SE2 0JZ sing 4 n y 
SE3 C19 0JZ sing 5 n y 
SE3 C21 0JZ sing 6 n y 
N22 C01 0JZ sing 7 n y 
C21 C01 0JZ doub 8 n y 
C01 C02 0JZ sing 9 n n 
N03 C02 0JZ sing 10 n n 
C02 O25 0JZ doub 11 n n 
N03 C04 0JZ sing 12 n n 
N03 HN03 0JZ sing 13 n n 
C28 C04 0JZ sing 14 n n 
C04 C05 0JZ sing 15 n n 
C04 H04 0JZ sing 16 n n 
C05 N24 0JZ doub 17 n y 
C08 C07 0JZ doub 18 n y 
C07 H07 0JZ sing 19 n n 
N24 C08 0JZ sing 20 n y 
C08 C09 0JZ sing 21 n n 
N10 C09 0JZ sing 22 n n 
C09 O26 0JZ doub 23 n n 
C11 N10 0JZ sing 24 n n 
N10 HN10 0JZ sing 25 n n 
C31 C11 0JZ sing 26 n n 
C12 C11 0JZ sing 27 n n 
C11 H11 0JZ sing 28 n n 
N23 C12 0JZ doub 29 n y 
C15 C14 0JZ doub 30 n y 
C14 H14 0JZ sing 31 n n 
C16 C15 0JZ sing 32 n n 
C15 N23 0JZ sing 33 n y 
N17 C16 0JZ sing 34 n n 
O27 C16 0JZ doub 35 n n 
C18 N17 0JZ sing 36 n n 
N17 HN17 0JZ sing 37 n n 
C34 C18 0JZ sing 38 n n 
C18 C19 0JZ sing 39 n n 
C18 H18 0JZ sing 40 n n 
C19 N22 0JZ doub 41 n y 
C21 H21 0JZ sing 42 n n 
C29 C28 0JZ sing 43 n n 
C28 C30 0JZ sing 44 n n 
C28 H28 0JZ sing 45 n n 
C29 H29 0JZ sing 46 n n 
C29 H29A 0JZ sing 47 n n 
C29 H29B 0JZ sing 48 n n 
C30 H30 0JZ sing 49 n n 
C30 H30A 0JZ sing 50 n n 
C30 H30B 0JZ sing 51 n n 
C32 C31 0JZ sing 52 n n 
C33 C31 0JZ sing 53 n n 
C31 H31 0JZ sing 54 n n 
C32 H32 0JZ sing 55 n n 
C32 H32A 0JZ sing 56 n n 
C32 H32B 0JZ sing 57 n n 
C33 H33 0JZ sing 58 n n 
C33 H33A 0JZ sing 59 n n 
C33 H33B 0JZ sing 60 n n 
C36 C34 0JZ sing 61 n n 
C35 C34 0JZ sing 62 n n 
C34 H34 0JZ sing 63 n n 
C35 H35 0JZ sing 64 n n 
C35 H35A 0JZ sing 65 n n 
C35 H35B 0JZ sing 66 n n 
C36 H36 0JZ sing 67 n n 
C36 H36A 0JZ sing 68 n n 
C36 H36B 0JZ sing 69 n n 
#
_atom_sites.entry_id                     4M2S 
_atom_sites.fract_transf_matrix[1][1]    0.010349 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008689 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002672 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 0JZ A 1 6001 6001 0JZ 0JZ . 
D 2 0JZ B 1 6002 6002 0JZ 0JZ . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 SE SE1 0JZ . . . D 2 17.813 33.877 88.025 1 392.69 ? SE1 0JZ 6002 B 1 
HETATM 2 SE SE2 0JZ . . . D 2 19.764 42.618 87.704 1 345.66 ? SE2 0JZ 6002 B 1 
HETATM 3 SE SE3 0JZ . . . D 2 11.291 39.135 89.97 1 550 ? SE3 0JZ 6002 B 1 
HETATM 4 C C01 0JZ . . . D 2 13.24 37.314 90.173 1 211.78 ? C01 0JZ 6002 B 1 
HETATM 5 C C02 0JZ . . . D 2 14.08 36.046 90.328 1 216.38 ? C02 0JZ 6002 B 1 
HETATM 6 N N03 0JZ . . . D 2 15.526 36.207 90.404 1 223.6 ? N03 0JZ 6002 B 1 
HETATM 7 C C04 0JZ . . . D 2 16.502 35.142 90.582 1 224.7 ? C04 0JZ 6002 B 1 
HETATM 8 C C05 0JZ . . . D 2 17.459 35.158 89.385 1 222.42 ? C05 0JZ 6002 B 1 
HETATM 9 C C07 0JZ . . . D 2 19.135 35.029 87.182 1 220.56 ? C07 0JZ 6002 B 1 
HETATM 10 C C08 0JZ . . . D 2 19.168 36.205 87.994 1 221.06 ? C08 0JZ 6002 B 1 
HETATM 11 C C09 0JZ . . . D 2 20.054 37.455 87.803 1 217.96 ? C09 0JZ 6002 B 1 
HETATM 12 N N10 0JZ . . . D 2 19.857 38.543 88.775 1 197.89 ? N10 0JZ 6002 B 1 
HETATM 13 C C11 0JZ . . . D 2 20.579 39.814 88.799 1 177.11 ? C11 0JZ 6002 B 1 
HETATM 14 C C12 0JZ . . . D 2 19.542 40.87 88.498 1 169.99 ? C12 0JZ 6002 B 1 
HETATM 15 C C14 0JZ . . . D 2 17.88 42.987 87.819 1 169.09 ? C14 0JZ 6002 B 1 
HETATM 16 C C15 0JZ . . . D 2 17.286 41.799 88.425 1 177.18 ? C15 0JZ 6002 B 1 
HETATM 17 C C16 0JZ . . . D 2 15.782 41.737 88.638 1 188.15 ? C16 0JZ 6002 B 1 
HETATM 18 N N17 0JZ . . . D 2 15.096 41.057 89.71 1 196.76 ? N17 0JZ 6002 B 1 
HETATM 19 C C18 0JZ . . . D 2 13.654 41.088 89.722 1 199.24 ? C18 0JZ 6002 B 1 
HETATM 20 C C19 0JZ . . . D 2 13.106 39.689 89.89 1 204.48 ? C19 0JZ 6002 B 1 
HETATM 21 C C21 0JZ . . . D 2 11.811 37.314 90.182 1 210 ? C21 0JZ 6002 B 1 
HETATM 22 N N22 0JZ . . . D 2 13.848 38.544 90.033 1 208.28 ? N22 0JZ 6002 B 1 
HETATM 23 N N23 0JZ . . . D 2 18.184 40.753 88.733 1 173.35 ? N23 0JZ 6002 B 1 
HETATM 24 N N24 0JZ . . . D 2 18.301 36.242 89.122 1 222 ? N24 0JZ 6002 B 1 
HETATM 25 O O25 0JZ . . . D 2 13.56 34.96 90.365 1 212.21 ? O25 0JZ 6002 B 1 
HETATM 26 O O26 0JZ . . . D 2 20.884 37.514 86.902 1 227.6 ? O26 0JZ 6002 B 1 
HETATM 27 O O27 0JZ . . . D 2 15.08 42.307 87.795 1 186.61 ? O27 0JZ 6002 B 1 
HETATM 28 C C28 0JZ . . . D 2 17.25 35.361 91.951 1 311.77 ? C28 0JZ 6002 B 1 
HETATM 29 C C29 0JZ . . . D 2 16.346 35.178 93.173 1 231.85 ? C29 0JZ 6002 B 1 
HETATM 30 C C30 0JZ . . . D 2 17.969 36.684 92.065 1 312.75 ? C30 0JZ 6002 B 1 
HETATM 31 C C31 0JZ . . . D 2 21.289 39.998 90.158 1 168.14 ? C31 0JZ 6002 B 1 
HETATM 32 C C32 0JZ . . . D 2 21.974 38.726 90.615 1 169.98 ? C32 0JZ 6002 B 1 
HETATM 33 C C33 0JZ . . . D 2 20.388 40.537 91.214 1 159.98 ? C33 0JZ 6002 B 1 
HETATM 34 C C34 0JZ . . . D 2 13.138 42.068 90.774 1 188.03 ? C34 0JZ 6002 B 1 
HETATM 35 C C35 0JZ . . . D 2 14.056 42.112 91.951 1 188.78 ? C35 0JZ 6002 B 1 
HETATM 36 C C36 0JZ . . . D 2 12.785 43.466 90.201 1 255.11 ? C36 0JZ 6002 B 1 
#
_model_server_stats.io_time_ms              35 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    123 
_model_server_stats.query_time_ms           382 
_model_server_stats.encode_time_ms          48 
_model_server_stats.element_count           36 
#