data_4M2T # _model_server_result.job_id OnZX_OC28xYL3ap6aPc8Fg _model_server_result.datetime_utc '2024-12-02 12:34:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4m2t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":6001}' # _entry.id 4M2T # _exptl.entry_id 4M2T _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 687.413 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S,11S,18S)-4,11,18-tri(propan-2-yl)-6,13,20-triselena-3,10,17,22,23,24-hexaazatetracyclo[17.2.1.1~5,8~.1~12,15~]tetracosa-1(21),5(24),7,12(23),14,19(22)-hexaene-2,9,16-trione _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4M2T _cell.length_a 97.742 _cell.length_b 114.978 _cell.length_c 375.81 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4M2T _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D 1 1 B,E,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N # _chem_comp.formula 'C24 H30 N6 O3 Se3' _chem_comp.formula_weight 687.413 _chem_comp.id 2J8 _chem_comp.mon_nstd_flag . _chem_comp.name (4S,11S,18S)-4,11,18-tri(propan-2-yl)-6,13,20-triselena-3,10,17,22,23,24-hexaazatetracyclo[17.2.1.1~5,8~.1~12,15~]tetracosa-1(21),5(24),7,12(23),14,19(22)-hexaene-2,9,16-trione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms cyclic-tris-(S)-valineselenazole;QZ59-SSS # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C05 SE1 2J8 sing 1 n y C07 SE1 2J8 sing 2 n y SE2 C14 2J8 sing 3 n y SE2 C12 2J8 sing 4 n y C19 SE3 2J8 sing 5 n y SE3 C21 2J8 sing 6 n y N22 C01 2J8 sing 7 n y C21 C01 2J8 doub 8 n y C01 C02 2J8 sing 9 n n N03 C02 2J8 sing 10 n n C02 O25 2J8 doub 11 n n N03 C04 2J8 sing 12 n n N03 HN03 2J8 sing 13 n n C28 C04 2J8 sing 14 n n C04 C05 2J8 sing 15 n n C04 H04 2J8 sing 16 n n N24 C05 2J8 doub 17 n y C08 C07 2J8 doub 18 n y C07 H07 2J8 sing 19 n n C09 C08 2J8 sing 20 n n N24 C08 2J8 sing 21 n y N10 C09 2J8 sing 22 n n C09 O26 2J8 doub 23 n n C11 N10 2J8 sing 24 n n N10 HN10 2J8 sing 25 n n C31 C11 2J8 sing 26 n n C12 C11 2J8 sing 27 n n C11 H11 2J8 sing 28 n n C12 N23 2J8 doub 29 n y C14 C15 2J8 doub 30 n y C14 H14 2J8 sing 31 n n C15 C16 2J8 sing 32 n n C15 N23 2J8 sing 33 n y N17 C16 2J8 sing 34 n n C16 O27 2J8 doub 35 n n N17 C18 2J8 sing 36 n n N17 HN17 2J8 sing 37 n n C34 C18 2J8 sing 38 n n C18 C19 2J8 sing 39 n n C18 H18 2J8 sing 40 n n C19 N22 2J8 doub 41 n y C21 H21 2J8 sing 42 n n C29 C28 2J8 sing 43 n n C28 C30 2J8 sing 44 n n C28 H28 2J8 sing 45 n n C29 H29 2J8 sing 46 n n C29 H29A 2J8 sing 47 n n C29 H29B 2J8 sing 48 n n C30 H30 2J8 sing 49 n n C30 H30A 2J8 sing 50 n n C30 H30B 2J8 sing 51 n n C33 C31 2J8 sing 52 n n C31 C32 2J8 sing 53 n n C31 H31 2J8 sing 54 n n C32 H32 2J8 sing 55 n n C32 H32A 2J8 sing 56 n n C32 H32B 2J8 sing 57 n n C33 H33 2J8 sing 58 n n C33 H33A 2J8 sing 59 n n C33 H33B 2J8 sing 60 n n C35 C34 2J8 sing 61 n n C36 C34 2J8 sing 62 n n C34 H34 2J8 sing 63 n n C35 H35 2J8 sing 64 n n C35 H35A 2J8 sing 65 n n C35 H35B 2J8 sing 66 n n C36 H36 2J8 sing 67 n n C36 H36A 2J8 sing 68 n n C36 H36B 2J8 sing 69 n n # _atom_sites.entry_id 4M2T _atom_sites.fract_transf_matrix[1][1] 0.010231 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008697 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002661 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 2J8 A 1 6001 6001 2J8 2J8 . D 2 2J8 A 1 6002 6002 2J8 2J8 . E 2 2J8 B 1 6003 6003 2J8 2J8 . F 2 2J8 B 1 6004 6004 2J8 2J8 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 SE SE1 2J8 . . . C 2 14.837 63.145 5.191 1 436.69 ? SE1 2J8 6001 A 1 HETATM 2 SE SE2 2J8 . . . C 2 14.46 56.709 -1.057 1 196.05 ? SE2 2J8 6001 A 1 HETATM 3 SE SE3 2J8 . . . C 2 22.205 59.454 1.389 1 497.57 ? SE3 2J8 6001 A 1 HETATM 4 C C01 2J8 . . . C 2 20.002 60.281 2.666 1 234.31 ? C01 2J8 6001 A 1 HETATM 5 C C02 2J8 . . . C 2 19.015 61.089 3.491 1 225.76 ? C02 2J8 6001 A 1 HETATM 6 N N03 2J8 . . . C 2 18.55 62.35 3.073 1 225.56 ? N03 2J8 6001 A 1 HETATM 7 C C04 2J8 . . . C 2 17.58 63.236 3.776 1 225.69 ? C04 2J8 6001 A 1 HETATM 8 C C05 2J8 . . . C 2 16.268 62.46 4.031 1 249.68 ? C05 2J8 6001 A 1 HETATM 9 C C07 2J8 . . . C 2 13.935 61.572 4.821 1 241.04 ? C07 2J8 6001 A 1 HETATM 10 C C08 2J8 . . . C 2 14.69 60.788 3.97 1 248.94 ? C08 2J8 6001 A 1 HETATM 11 C C09 2J8 . . . C 2 14.195 59.44 3.462 1 261.67 ? C09 2J8 6001 A 1 HETATM 12 N N10 2J8 . . . C 2 13.776 59.312 2.128 1 271.63 ? N10 2J8 6001 A 1 HETATM 13 C C11 2J8 . . . C 2 13.296 58.118 1.442 1 277.92 ? C11 2J8 6001 A 1 HETATM 14 C C12 2J8 . . . C 2 14.511 57.404 0.758 1 244.16 ? C12 2J8 6001 A 1 HETATM 15 C C14 2J8 . . . C 2 16.204 56.161 -0.789 1 237.92 ? C14 2J8 6001 A 1 HETATM 16 C C15 2J8 . . . C 2 16.595 56.488 0.465 1 242.3 ? C15 2J8 6001 A 1 HETATM 17 C C16 2J8 . . . C 2 17.989 56.186 0.91 1 250.81 ? C16 2J8 6001 A 1 HETATM 18 N N17 2J8 . . . C 2 18.936 57.06 0.438 1 260.9 ? N17 2J8 6001 A 1 HETATM 19 C C18 2J8 . . . C 2 20.334 57.143 0.628 1 267.71 ? C18 2J8 6001 A 1 HETATM 20 C C19 2J8 . . . C 2 20.531 58.461 1.378 1 252.85 ? C19 2J8 6001 A 1 HETATM 21 C C21 2J8 . . . C 2 21.283 60.681 2.463 1 230.94 ? C21 2J8 6001 A 1 HETATM 22 N N22 2J8 . . . C 2 19.624 59.084 2.066 1 245.64 ? N22 2J8 6001 A 1 HETATM 23 N N23 2J8 . . . C 2 15.681 57.184 1.284 1 242.51 ? N23 2J8 6001 A 1 HETATM 24 N N24 2J8 . . . C 2 15.942 61.271 3.555 1 249.97 ? N24 2J8 6001 A 1 HETATM 25 O O25 2J8 . . . C 2 18.605 60.595 4.549 1 221.14 ? O25 2J8 6001 A 1 HETATM 26 O O26 2J8 . . . C 2 14.163 58.454 4.225 1 262.29 ? O26 2J8 6001 A 1 HETATM 27 O O27 2J8 . . . C 2 18.251 55.198 1.621 1 249.99 ? O27 2J8 6001 A 1 HETATM 28 C C28 2J8 . . . C 2 17.389 64.618 2.988 1 154.52 ? C28 2J8 6001 A 1 HETATM 29 C C29 2J8 . . . C 2 16.113 64.686 2.139 1 156.96 ? C29 2J8 6001 A 1 HETATM 30 C C30 2J8 . . . C 2 17.578 65.917 3.806 1 149.67 ? C30 2J8 6001 A 1 HETATM 31 C C31 2J8 . . . C 2 12.087 58.435 0.412 1 220.68 ? C31 2J8 6001 A 1 HETATM 32 C C32 2J8 . . . C 2 10.693 58.008 0.903 1 159.7 ? C32 2J8 6001 A 1 HETATM 33 C C33 2J8 . . . C 2 11.984 59.87 -0.065 1 220.76 ? C33 2J8 6001 A 1 HETATM 34 C C34 2J8 . . . C 2 21.057 57.196 -0.783 1 194.82 ? C34 2J8 6001 A 1 HETATM 35 C C35 2J8 . . . C 2 20.184 56.865 -2.005 1 158.62 ? C35 2J8 6001 A 1 HETATM 36 C C36 2J8 . . . C 2 22.31 56.368 -0.874 1 193.7 ? C36 2J8 6001 A 1 # _model_server_stats.io_time_ms 161 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 453 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 36 #