data_4M2T # _model_server_result.job_id snB_FVJL_Nv48vTI9Cnl_Q _model_server_result.datetime_utc '2024-12-02 12:41:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4m2t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":6002}' # _entry.id 4M2T # _exptl.entry_id 4M2T _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 687.413 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S,11S,18S)-4,11,18-tri(propan-2-yl)-6,13,20-triselena-3,10,17,22,23,24-hexaazatetracyclo[17.2.1.1~5,8~.1~12,15~]tetracosa-1(21),5(24),7,12(23),14,19(22)-hexaene-2,9,16-trione _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4M2T _cell.length_a 97.742 _cell.length_b 114.978 _cell.length_c 375.81 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4M2T _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D 1 1 B,E,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N # _chem_comp.formula 'C24 H30 N6 O3 Se3' _chem_comp.formula_weight 687.413 _chem_comp.id 2J8 _chem_comp.mon_nstd_flag . _chem_comp.name (4S,11S,18S)-4,11,18-tri(propan-2-yl)-6,13,20-triselena-3,10,17,22,23,24-hexaazatetracyclo[17.2.1.1~5,8~.1~12,15~]tetracosa-1(21),5(24),7,12(23),14,19(22)-hexaene-2,9,16-trione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms cyclic-tris-(S)-valineselenazole;QZ59-SSS # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C05 SE1 2J8 sing 1 n y C07 SE1 2J8 sing 2 n y SE2 C14 2J8 sing 3 n y SE2 C12 2J8 sing 4 n y C19 SE3 2J8 sing 5 n y SE3 C21 2J8 sing 6 n y N22 C01 2J8 sing 7 n y C21 C01 2J8 doub 8 n y C01 C02 2J8 sing 9 n n N03 C02 2J8 sing 10 n n C02 O25 2J8 doub 11 n n N03 C04 2J8 sing 12 n n N03 HN03 2J8 sing 13 n n C28 C04 2J8 sing 14 n n C04 C05 2J8 sing 15 n n C04 H04 2J8 sing 16 n n N24 C05 2J8 doub 17 n y C08 C07 2J8 doub 18 n y C07 H07 2J8 sing 19 n n C09 C08 2J8 sing 20 n n N24 C08 2J8 sing 21 n y N10 C09 2J8 sing 22 n n C09 O26 2J8 doub 23 n n C11 N10 2J8 sing 24 n n N10 HN10 2J8 sing 25 n n C31 C11 2J8 sing 26 n n C12 C11 2J8 sing 27 n n C11 H11 2J8 sing 28 n n C12 N23 2J8 doub 29 n y C14 C15 2J8 doub 30 n y C14 H14 2J8 sing 31 n n C15 C16 2J8 sing 32 n n C15 N23 2J8 sing 33 n y N17 C16 2J8 sing 34 n n C16 O27 2J8 doub 35 n n N17 C18 2J8 sing 36 n n N17 HN17 2J8 sing 37 n n C34 C18 2J8 sing 38 n n C18 C19 2J8 sing 39 n n C18 H18 2J8 sing 40 n n C19 N22 2J8 doub 41 n y C21 H21 2J8 sing 42 n n C29 C28 2J8 sing 43 n n C28 C30 2J8 sing 44 n n C28 H28 2J8 sing 45 n n C29 H29 2J8 sing 46 n n C29 H29A 2J8 sing 47 n n C29 H29B 2J8 sing 48 n n C30 H30 2J8 sing 49 n n C30 H30A 2J8 sing 50 n n C30 H30B 2J8 sing 51 n n C33 C31 2J8 sing 52 n n C31 C32 2J8 sing 53 n n C31 H31 2J8 sing 54 n n C32 H32 2J8 sing 55 n n C32 H32A 2J8 sing 56 n n C32 H32B 2J8 sing 57 n n C33 H33 2J8 sing 58 n n C33 H33A 2J8 sing 59 n n C33 H33B 2J8 sing 60 n n C35 C34 2J8 sing 61 n n C36 C34 2J8 sing 62 n n C34 H34 2J8 sing 63 n n C35 H35 2J8 sing 64 n n C35 H35A 2J8 sing 65 n n C35 H35B 2J8 sing 66 n n C36 H36 2J8 sing 67 n n C36 H36A 2J8 sing 68 n n C36 H36B 2J8 sing 69 n n # _atom_sites.entry_id 4M2T _atom_sites.fract_transf_matrix[1][1] 0.010231 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008697 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002661 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 2J8 A 1 6001 6001 2J8 2J8 . D 2 2J8 A 1 6002 6002 2J8 2J8 . E 2 2J8 B 1 6003 6003 2J8 2J8 . F 2 2J8 B 1 6004 6004 2J8 2J8 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 SE SE1 2J8 . . . D 2 24.496 52.605 2.226 1 512.78 ? SE1 2J8 6002 A 1 HETATM 2 SE SE3 2J8 . . . D 2 20.083 46.945 -3.508 1 514.21 ? SE3 2J8 6002 A 1 HETATM 3 C C01 2J8 . . . D 2 21.866 48.568 -2.34 1 314.21 ? C01 2J8 6002 A 1 HETATM 4 C C02 2J8 . . . D 2 22.605 49.844 -1.905 1 237.73 ? C02 2J8 6002 A 1 HETATM 5 N N03 2J8 . . . D 2 22.179 50.49 -0.742 1 240.03 ? N03 2J8 6002 A 1 HETATM 6 C C04 2J8 . . . D 2 22.646 51.714 -0.068 1 238.33 ? C04 2J8 6002 A 1 HETATM 7 C C05 2J8 . . . D 2 24.001 51.517 0.662 1 234.7 ? C05 2J8 6002 A 1 HETATM 8 C C07 2J8 . . . D 2 26.076 51.635 2.245 1 235.41 ? C07 2J8 6002 A 1 HETATM 9 C C08 2J8 . . . D 2 26.084 50.725 1.23 1 234.98 ? C08 2J8 6002 A 1 HETATM 10 C C19 2J8 . . . D 2 21.515 46.296 -2.325 1 314.95 ? C19 2J8 6002 A 1 HETATM 11 C C21 2J8 . . . D 2 20.787 48.636 -3.177 1 315.43 ? C21 2J8 6002 A 1 HETATM 12 N N22 2J8 . . . D 2 22.243 47.288 -1.881 1 314.86 ? N22 2J8 6002 A 1 HETATM 13 N N24 2J8 . . . D 2 24.96 50.677 0.389 1 234.07 ? N24 2J8 6002 A 1 HETATM 14 O O25 2J8 . . . D 2 23.539 50.299 -2.588 1 235.55 ? O25 2J8 6002 A 1 HETATM 15 C C28 2J8 . . . D 2 21.459 52.207 0.868 1 245.92 ? C28 2J8 6002 A 1 HETATM 16 C C29 2J8 . . . D 2 21.198 51.335 2.089 1 245.06 ? C29 2J8 6002 A 1 HETATM 17 C C30 2J8 . . . D 2 21.426 53.671 1.266 1 245.75 ? C30 2J8 6002 A 1 # _model_server_stats.io_time_ms 38 _model_server_stats.parse_time_ms 145 _model_server_stats.create_model_time_ms 168 _model_server_stats.query_time_ms 256 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 17 #