data_4M2X # _model_server_result.job_id cYd4W3lAbIS5G6pH0cZ2XQ _model_server_result.datetime_utc '2024-11-22 02:37:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4m2x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"V","auth_seq_id":201}' # _entry.id 4M2X # _exptl.entry_id 4M2X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 93.48 _cell.angle_beta 94.1 _cell.angle_gamma 100.25 _cell.entry_id 4M2X _cell.length_a 36.09 _cell.length_b 64.838 _cell.length_c 68.062 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4M2X _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,G,H,I,J,K,L,M,JA 1 1 B,N,O,P,Q,R,S,T,U,KA 2 1 C,V,W,X,Y,Z,AA,BA,CA,LA 3 1 D,DA,EA,FA,GA,HA,IA,MA 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 N N N ? 2 V N N ? 2 DA N N # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 243 n n PA O2A NDP sing 244 n n PA O5B NDP sing 245 n n PA O3 NDP sing 246 n n O2A HOA2 NDP sing 247 n n O5B C5B NDP sing 248 n n C5B C4B NDP sing 249 n n C5B H51A NDP sing 250 n n C5B H52A NDP sing 251 n n C4B O4B NDP sing 252 n n C4B C3B NDP sing 253 n n C4B H4B NDP sing 254 n n O4B C1B NDP sing 255 n n C3B O3B NDP sing 256 n n C3B C2B NDP sing 257 n n C3B H3B NDP sing 258 n n O3B HO3A NDP sing 259 n n C2B O2B NDP sing 260 n n C2B C1B NDP sing 261 n n C2B H2B NDP sing 262 n n O2B P2B NDP sing 263 n n C1B N9A NDP sing 264 n n C1B H1B NDP sing 265 n n N9A C8A NDP sing 266 n y N9A C4A NDP sing 267 n y C8A N7A NDP doub 268 n y C8A H8A NDP sing 269 n n N7A C5A NDP sing 270 n y C5A C6A NDP sing 271 n y C5A C4A NDP doub 272 n y C6A N6A NDP sing 273 n n C6A N1A NDP doub 274 n y N6A H61A NDP sing 275 n n N6A H62A NDP sing 276 n n N1A C2A NDP sing 277 n y C2A N3A NDP doub 278 n y C2A H2A NDP sing 279 n n N3A C4A NDP sing 280 n y O3 PN NDP sing 281 n n PN O1N NDP doub 282 n n PN O2N NDP sing 283 n n PN O5D NDP sing 284 n n O2N H21N NDP sing 285 n n O5D C5D NDP sing 286 n n C5D C4D NDP sing 287 n n C5D H51N NDP sing 288 n n C5D H52N NDP sing 289 n n C4D O4D NDP sing 290 n n C4D C3D NDP sing 291 n n C4D H4D NDP sing 292 n n O4D C1D NDP sing 293 n n C3D O3D NDP sing 294 n n C3D C2D NDP sing 295 n n C3D H3D NDP sing 296 n n O3D HO3N NDP sing 297 n n C2D O2D NDP sing 298 n n C2D C1D NDP sing 299 n n C2D H2D NDP sing 300 n n O2D HO2N NDP sing 301 n n C1D N1N NDP sing 302 n n C1D H1D NDP sing 303 n n N1N C2N NDP sing 304 n n N1N C6N NDP sing 305 n n C2N C3N NDP doub 306 n n C2N H2N NDP sing 307 n n C3N C7N NDP sing 308 n n C3N C4N NDP sing 309 n n C7N O7N NDP doub 310 n n C7N N7N NDP sing 311 n n N7N H71N NDP sing 312 n n N7N H72N NDP sing 313 n n C4N C5N NDP sing 314 n n C4N H41N NDP sing 315 n n C4N H42N NDP sing 316 n n C5N C6N NDP doub 317 n n C5N H5N NDP sing 318 n n C6N H6N NDP sing 319 n n P2B O1X NDP doub 320 n n P2B O2X NDP sing 321 n n P2B O3X NDP sing 322 n n O2X HOP2 NDP sing 323 n n O3X HOP3 NDP sing 324 n n # _atom_sites.entry_id 4M2X _atom_sites.fract_transf_matrix[1][1] 0.027709 _atom_sites.fract_transf_matrix[1][2] 0.005012 _atom_sites.fract_transf_matrix[1][3] 0.002366 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015673 _atom_sites.fract_transf_matrix[2][3] 0.001177 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014771 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 NDP A 1 201 200 NDP NDP . F 3 TMQ A 1 202 201 TMQ DRG . G 4 ACT A 1 203 1 ACT ACT . H 4 ACT A 1 204 4 ACT ACT . I 4 ACT A 1 205 6 ACT ACT . J 4 ACT A 1 206 13 ACT ACT . K 4 ACT A 1 207 14 ACT ACT . L 4 ACT A 1 208 19 ACT ACT . M 5 PO4 A 1 209 1 PO4 PO4 . N 2 NDP C 1 201 200 NDP NDP . O 3 TMQ C 1 202 201 TMQ DRG . P 4 ACT C 1 203 3 ACT ACT . Q 4 ACT C 1 204 11 ACT ACT . R 4 ACT C 1 205 16 ACT ACT . S 4 ACT C 1 206 17 ACT ACT . T 4 ACT C 1 207 18 ACT ACT . U 4 ACT C 1 208 34 ACT ACT . V 2 NDP E 1 201 200 NDP NDP . W 3 TMQ E 1 202 201 TMQ DRG . X 4 ACT E 1 203 2 ACT ACT . Y 4 ACT E 1 204 9 ACT ACT . Z 4 ACT E 1 205 12 ACT ACT . AA 4 ACT E 1 206 15 ACT ACT . BA 4 ACT E 1 207 20 ACT ACT . CA 4 ACT E 1 208 35 ACT ACT . DA 2 NDP G 1 201 200 NDP NDP . EA 3 TMQ G 1 202 201 TMQ DRG . FA 4 ACT G 1 203 7 ACT ACT . GA 4 ACT G 1 204 8 ACT ACT . HA 4 ACT G 1 205 10 ACT ACT . IA 4 ACT G 1 206 32 ACT ACT . JA 6 HOH A 1 301 3 HOH HOH . JA 6 HOH A 2 302 4 HOH HOH . JA 6 HOH A 3 303 7 HOH HOH . JA 6 HOH A 4 304 13 HOH HOH . JA 6 HOH A 5 305 21 HOH HOH . JA 6 HOH A 6 306 26 HOH HOH . JA 6 HOH A 7 307 27 HOH HOH . JA 6 HOH A 8 308 28 HOH HOH . JA 6 HOH A 9 309 33 HOH HOH . JA 6 HOH A 10 310 37 HOH HOH . JA 6 HOH A 11 311 39 HOH HOH . JA 6 HOH A 12 312 40 HOH HOH . JA 6 HOH A 13 313 42 HOH HOH . JA 6 HOH A 14 314 47 HOH HOH . JA 6 HOH A 15 315 49 HOH HOH . JA 6 HOH A 16 316 60 HOH HOH . JA 6 HOH A 17 317 62 HOH HOH . JA 6 HOH A 18 318 64 HOH HOH . JA 6 HOH A 19 319 68 HOH HOH . JA 6 HOH A 20 320 72 HOH HOH . JA 6 HOH A 21 321 77 HOH HOH . JA 6 HOH A 22 322 85 HOH HOH . JA 6 HOH A 23 323 89 HOH HOH . JA 6 HOH A 24 324 90 HOH HOH . JA 6 HOH A 25 325 92 HOH HOH . JA 6 HOH A 26 326 95 HOH HOH . JA 6 HOH A 27 327 99 HOH HOH . JA 6 HOH A 28 328 100 HOH HOH . KA 6 HOH C 1 301 5 HOH HOH . KA 6 HOH C 2 302 6 HOH HOH . KA 6 HOH C 3 303 8 HOH HOH . KA 6 HOH C 4 304 15 HOH HOH . KA 6 HOH C 5 305 17 HOH HOH . KA 6 HOH C 6 306 19 HOH HOH . KA 6 HOH C 7 307 24 HOH HOH . KA 6 HOH C 8 308 25 HOH HOH . KA 6 HOH C 9 309 29 HOH HOH . KA 6 HOH C 10 310 30 HOH HOH . KA 6 HOH C 11 311 43 HOH HOH . KA 6 HOH C 12 312 44 HOH HOH . KA 6 HOH C 13 313 45 HOH HOH . KA 6 HOH C 14 314 48 HOH HOH . KA 6 HOH C 15 315 53 HOH HOH . KA 6 HOH C 16 316 54 HOH HOH . KA 6 HOH C 17 317 58 HOH HOH . KA 6 HOH C 18 318 61 HOH HOH . KA 6 HOH C 19 319 69 HOH HOH . KA 6 HOH C 20 320 71 HOH HOH . KA 6 HOH C 21 321 74 HOH HOH . KA 6 HOH C 22 322 79 HOH HOH . KA 6 HOH C 23 323 82 HOH HOH . KA 6 HOH C 24 324 83 HOH HOH . KA 6 HOH C 25 325 87 HOH HOH . KA 6 HOH C 26 326 91 HOH HOH . LA 6 HOH E 1 301 1 HOH HOH . LA 6 HOH E 2 302 14 HOH HOH . LA 6 HOH E 3 303 18 HOH HOH . LA 6 HOH E 4 304 22 HOH HOH . LA 6 HOH E 5 305 31 HOH HOH . LA 6 HOH E 6 306 32 HOH HOH . LA 6 HOH E 7 307 34 HOH HOH . LA 6 HOH E 8 308 35 HOH HOH . LA 6 HOH E 9 309 36 HOH HOH . LA 6 HOH E 10 310 38 HOH HOH . LA 6 HOH E 11 311 46 HOH HOH . LA 6 HOH E 12 312 50 HOH HOH . LA 6 HOH E 13 313 52 HOH HOH . LA 6 HOH E 14 314 55 HOH HOH . LA 6 HOH E 15 315 56 HOH HOH . LA 6 HOH E 16 316 57 HOH HOH . LA 6 HOH E 17 317 59 HOH HOH . LA 6 HOH E 18 318 67 HOH HOH . LA 6 HOH E 19 319 75 HOH HOH . LA 6 HOH E 20 320 76 HOH HOH . LA 6 HOH E 21 321 78 HOH HOH . LA 6 HOH E 22 322 80 HOH HOH . LA 6 HOH E 23 323 81 HOH HOH . LA 6 HOH E 24 324 84 HOH HOH . LA 6 HOH E 25 325 93 HOH HOH . LA 6 HOH E 26 326 94 HOH HOH . LA 6 HOH E 27 327 96 HOH HOH . LA 6 HOH E 28 328 98 HOH HOH . LA 6 HOH E 29 329 101 HOH HOH . MA 6 HOH G 1 301 2 HOH HOH . MA 6 HOH G 2 302 9 HOH HOH . MA 6 HOH G 3 303 11 HOH HOH . MA 6 HOH G 4 304 12 HOH HOH . MA 6 HOH G 5 305 16 HOH HOH . MA 6 HOH G 6 306 20 HOH HOH . MA 6 HOH G 7 307 23 HOH HOH . MA 6 HOH G 8 308 41 HOH HOH . MA 6 HOH G 9 309 51 HOH HOH . MA 6 HOH G 10 310 63 HOH HOH . MA 6 HOH G 11 311 65 HOH HOH . MA 6 HOH G 12 312 73 HOH HOH . MA 6 HOH G 13 313 86 HOH HOH . MA 6 HOH G 14 314 88 HOH HOH . MA 6 HOH G 15 315 97 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . V 2 14.917 30.755 59.644 1 29.25 ? PA NDP 201 E 1 HETATM 2 O O1A NDP . . . V 2 15.954 32.023 59.777 1 31.04 ? O1A NDP 201 E 1 HETATM 3 O O2A NDP . . . V 2 15.519 29.462 59.977 1 30.66 ? O2A NDP 201 E 1 HETATM 4 O O5B NDP . . . V 2 13.669 31.01 60.679 1 30.01 ? O5B NDP 201 E 1 HETATM 5 C C5B NDP . . . V 2 12.942 32.2 60.519 1 31.12 ? C5B NDP 201 E 1 HETATM 6 C C4B NDP . . . V 2 12.122 32.318 61.81 1 30.53 ? C4B NDP 201 E 1 HETATM 7 O O4B NDP . . . V 2 13.04 32.642 62.904 1 29.32 ? O4B NDP 201 E 1 HETATM 8 C C3B NDP . . . V 2 11.197 33.518 61.733 1 30.4 ? C3B NDP 201 E 1 HETATM 9 O O3B NDP . . . V 2 10.087 33.237 60.936 1 31.57 ? O3B NDP 201 E 1 HETATM 10 C C2B NDP . . . V 2 10.904 33.7 63.196 1 30.27 ? C2B NDP 201 E 1 HETATM 11 O O2B NDP . . . V 2 10.167 32.644 63.738 1 28.68 ? O2B NDP 201 E 1 HETATM 12 C C1B NDP . . . V 2 12.305 33.527 63.764 1 29.41 ? C1B NDP 201 E 1 HETATM 13 N N9A NDP . . . V 2 12.953 34.803 63.85 1 29.94 ? N9A NDP 201 E 1 HETATM 14 C C8A NDP . . . V 2 14.004 35.345 62.981 1 34.96 ? C8A NDP 201 E 1 HETATM 15 N N7A NDP . . . V 2 13.833 36.769 63.128 1 37.86 ? N7A NDP 201 E 1 HETATM 16 C C5A NDP . . . V 2 13.458 36.973 64.526 1 39.91 ? C5A NDP 201 E 1 HETATM 17 C C6A NDP . . . V 2 13.562 38.126 65.481 1 41.96 ? C6A NDP 201 E 1 HETATM 18 N N6A NDP . . . V 2 14.116 39.393 65.035 1 44.63 ? N6A NDP 201 E 1 HETATM 19 N N1A NDP . . . V 2 13.097 37.95 66.849 1 40.68 ? N1A NDP 201 E 1 HETATM 20 C C2A NDP . . . V 2 12.511 36.625 67.31 1 35 ? C2A NDP 201 E 1 HETATM 21 N N3A NDP . . . V 2 12.409 35.476 66.357 1 34.76 ? N3A NDP 201 E 1 HETATM 22 C C4A NDP . . . V 2 12.875 35.663 64.993 1 34.26 ? C4A NDP 201 E 1 HETATM 23 O O3 NDP . . . V 2 14.171 30.769 58.195 1 29.78 ? O3 NDP 201 E 1 HETATM 24 P PN NDP . . . V 2 14.938 30.963 56.763 1 33.52 ? PN NDP 201 E 1 HETATM 25 O O1N NDP . . . V 2 13.682 31.025 55.683 1 25.91 ? O1N NDP 201 E 1 HETATM 26 O O2N NDP . . . V 2 15.696 32.202 56.673 1 34.94 ? O2N NDP 201 E 1 HETATM 27 O O5D NDP . . . V 2 15.9 29.669 56.546 1 28 ? O5D NDP 201 E 1 HETATM 28 C C5D NDP . . . V 2 15.279 28.408 56.542 1 28.28 ? C5D NDP 201 E 1 HETATM 29 C C4D NDP . . . V 2 15.771 27.782 55.233 1 29.52 ? C4D NDP 201 E 1 HETATM 30 O O4D NDP . . . V 2 17.222 27.649 55.405 1 26.09 ? O4D NDP 201 E 1 HETATM 31 C C3D NDP . . . V 2 15.179 26.383 55.007 1 31.51 ? C3D NDP 201 E 1 HETATM 32 O O3D NDP . . . V 2 14.974 26.162 53.622 1 36.29 ? O3D NDP 201 E 1 HETATM 33 C C2D NDP . . . V 2 16.282 25.511 55.516 1 27.9 ? C2D NDP 201 E 1 HETATM 34 O O2D NDP . . . V 2 16.262 24.196 55.031 1 31.3 ? O2D NDP 201 E 1 HETATM 35 C C1D NDP . . . V 2 17.51 26.282 55.053 1 25.85 ? C1D NDP 201 E 1 HETATM 36 N N1N NDP . . . V 2 18.652 25.831 55.813 1 31.59 ? N1N NDP 201 E 1 HETATM 37 C C2N NDP . . . V 2 19.976 25.396 55.329 1 30.8 ? C2N NDP 201 E 1 HETATM 38 C C3N NDP . . . V 2 21.123 26.073 56.068 1 26.18 ? C3N NDP 201 E 1 HETATM 39 C C7N NDP . . . V 2 22.386 25.5 55.428 1 30.19 ? C7N NDP 201 E 1 HETATM 40 O O7N NDP . . . V 2 23.379 25.422 56.078 1 26.57 ? O7N NDP 201 E 1 HETATM 41 N N7N NDP . . . V 2 22.291 24.983 54.048 1 29.68 ? N7N NDP 201 E 1 HETATM 42 C C4N NDP . . . V 2 21.004 25.664 57.524 1 26.2 ? C4N NDP 201 E 1 HETATM 43 C C5N NDP . . . V 2 19.588 25.653 58.083 1 26.16 ? C5N NDP 201 E 1 HETATM 44 C C6N NDP . . . V 2 18.439 26.159 57.216 1 26.57 ? C6N NDP 201 E 1 HETATM 45 P P2B NDP . . . V 2 8.536 32.721 63.824 1 28.37 ? P2B NDP 201 E 1 HETATM 46 O O1X NDP . . . V 2 7.9 32.857 62.303 1 31.77 ? O1X NDP 201 E 1 HETATM 47 O O2X NDP . . . V 2 8.018 31.312 64.499 1 35.98 ? O2X NDP 201 E 1 HETATM 48 O O3X NDP . . . V 2 8.143 33.863 64.641 1 30.91 ? O3X NDP 201 E 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 48 #