data_4M2X # _model_server_result.job_id ol5d-no8x6pCq6GyR6cv-Q _model_server_result.datetime_utc '2024-11-25 03:18:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4m2x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":202}' # _entry.id 4M2X # _exptl.entry_id 4M2X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 370.426 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description TRIMETREXATE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 93.48 _cell.angle_beta 94.1 _cell.angle_gamma 100.25 _cell.entry_id 4M2X _cell.length_a 36.09 _cell.length_b 64.838 _cell.length_c 68.062 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4M2X _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,G,H,I,J,K,L,M,JA 1 1 B,N,O,P,Q,R,S,T,U,KA 2 1 C,V,W,X,Y,Z,AA,BA,CA,LA 3 1 D,DA,EA,FA,GA,HA,IA,MA 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 O N N ? 3 W N N ? 3 EA N N # _chem_comp.formula 'C19 H24 N5 O3 1' _chem_comp.formula_weight 370.426 _chem_comp.id TMQ _chem_comp.mon_nstd_flag . _chem_comp.name TRIMETREXATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 TMQ doub 398 n y N1 C3A TMQ sing 399 n y N1 HN TMQ sing 400 n n C2 N3 TMQ sing 401 n y C2 N24 TMQ sing 402 n n N3 C4 TMQ doub 403 n y C4 C4A TMQ sing 404 n y C4 N25 TMQ sing 405 n n C3A C4A TMQ doub 406 n y C3A C8 TMQ sing 407 n y C4A C5 TMQ sing 408 n y C5 C6 TMQ doub 409 n y C5 C17 TMQ sing 410 n n C6 C7 TMQ sing 411 n y C6 C9 TMQ sing 412 n n C7 C8 TMQ doub 413 n y C7 H7 TMQ sing 414 n n C8 H8 TMQ sing 415 n n C9 N10 TMQ sing 416 n n C9 H91 TMQ sing 417 n n C9 H92 TMQ sing 418 n n N10 C11 TMQ sing 419 n n N10 HN1 TMQ sing 420 n n C11 C12 TMQ doub 421 n y C11 C16 TMQ sing 422 n y C12 C13 TMQ sing 423 n y C12 H12 TMQ sing 424 n n C13 C14 TMQ doub 425 n y C13 O18 TMQ sing 426 n n C14 C15 TMQ sing 427 n y C14 O19 TMQ sing 428 n n C15 C16 TMQ doub 429 n y C15 O20 TMQ sing 430 n n C16 H16 TMQ sing 431 n n C17 H171 TMQ sing 432 n n C17 H172 TMQ sing 433 n n C17 H173 TMQ sing 434 n n O18 C21 TMQ sing 435 n n O19 C22 TMQ sing 436 n n O20 C23 TMQ sing 437 n n C21 H211 TMQ sing 438 n n C21 H212 TMQ sing 439 n n C21 H213 TMQ sing 440 n n C22 H221 TMQ sing 441 n n C22 H222 TMQ sing 442 n n C22 H223 TMQ sing 443 n n C23 H231 TMQ sing 444 n n C23 H232 TMQ sing 445 n n C23 H233 TMQ sing 446 n n N24 HN21 TMQ sing 447 n n N24 HN22 TMQ sing 448 n n N25 HN51 TMQ sing 449 n n N25 HN52 TMQ sing 450 n n # _atom_sites.entry_id 4M2X _atom_sites.fract_transf_matrix[1][1] 0.027709 _atom_sites.fract_transf_matrix[1][2] 0.005012 _atom_sites.fract_transf_matrix[1][3] 0.002366 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015673 _atom_sites.fract_transf_matrix[2][3] 0.001177 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014771 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 NDP A 1 201 200 NDP NDP . F 3 TMQ A 1 202 201 TMQ DRG . G 4 ACT A 1 203 1 ACT ACT . H 4 ACT A 1 204 4 ACT ACT . I 4 ACT A 1 205 6 ACT ACT . J 4 ACT A 1 206 13 ACT ACT . K 4 ACT A 1 207 14 ACT ACT . L 4 ACT A 1 208 19 ACT ACT . M 5 PO4 A 1 209 1 PO4 PO4 . N 2 NDP C 1 201 200 NDP NDP . O 3 TMQ C 1 202 201 TMQ DRG . P 4 ACT C 1 203 3 ACT ACT . Q 4 ACT C 1 204 11 ACT ACT . R 4 ACT C 1 205 16 ACT ACT . S 4 ACT C 1 206 17 ACT ACT . T 4 ACT C 1 207 18 ACT ACT . U 4 ACT C 1 208 34 ACT ACT . V 2 NDP E 1 201 200 NDP NDP . W 3 TMQ E 1 202 201 TMQ DRG . X 4 ACT E 1 203 2 ACT ACT . Y 4 ACT E 1 204 9 ACT ACT . Z 4 ACT E 1 205 12 ACT ACT . AA 4 ACT E 1 206 15 ACT ACT . BA 4 ACT E 1 207 20 ACT ACT . CA 4 ACT E 1 208 35 ACT ACT . DA 2 NDP G 1 201 200 NDP NDP . EA 3 TMQ G 1 202 201 TMQ DRG . FA 4 ACT G 1 203 7 ACT ACT . GA 4 ACT G 1 204 8 ACT ACT . HA 4 ACT G 1 205 10 ACT ACT . IA 4 ACT G 1 206 32 ACT ACT . JA 6 HOH A 1 301 3 HOH HOH . JA 6 HOH A 2 302 4 HOH HOH . JA 6 HOH A 3 303 7 HOH HOH . JA 6 HOH A 4 304 13 HOH HOH . JA 6 HOH A 5 305 21 HOH HOH . JA 6 HOH A 6 306 26 HOH HOH . JA 6 HOH A 7 307 27 HOH HOH . JA 6 HOH A 8 308 28 HOH HOH . JA 6 HOH A 9 309 33 HOH HOH . JA 6 HOH A 10 310 37 HOH HOH . JA 6 HOH A 11 311 39 HOH HOH . JA 6 HOH A 12 312 40 HOH HOH . JA 6 HOH A 13 313 42 HOH HOH . JA 6 HOH A 14 314 47 HOH HOH . JA 6 HOH A 15 315 49 HOH HOH . JA 6 HOH A 16 316 60 HOH HOH . JA 6 HOH A 17 317 62 HOH HOH . JA 6 HOH A 18 318 64 HOH HOH . JA 6 HOH A 19 319 68 HOH HOH . JA 6 HOH A 20 320 72 HOH HOH . JA 6 HOH A 21 321 77 HOH HOH . JA 6 HOH A 22 322 85 HOH HOH . JA 6 HOH A 23 323 89 HOH HOH . JA 6 HOH A 24 324 90 HOH HOH . JA 6 HOH A 25 325 92 HOH HOH . JA 6 HOH A 26 326 95 HOH HOH . JA 6 HOH A 27 327 99 HOH HOH . JA 6 HOH A 28 328 100 HOH HOH . KA 6 HOH C 1 301 5 HOH HOH . KA 6 HOH C 2 302 6 HOH HOH . KA 6 HOH C 3 303 8 HOH HOH . KA 6 HOH C 4 304 15 HOH HOH . KA 6 HOH C 5 305 17 HOH HOH . KA 6 HOH C 6 306 19 HOH HOH . KA 6 HOH C 7 307 24 HOH HOH . KA 6 HOH C 8 308 25 HOH HOH . KA 6 HOH C 9 309 29 HOH HOH . KA 6 HOH C 10 310 30 HOH HOH . KA 6 HOH C 11 311 43 HOH HOH . KA 6 HOH C 12 312 44 HOH HOH . KA 6 HOH C 13 313 45 HOH HOH . KA 6 HOH C 14 314 48 HOH HOH . KA 6 HOH C 15 315 53 HOH HOH . KA 6 HOH C 16 316 54 HOH HOH . KA 6 HOH C 17 317 58 HOH HOH . KA 6 HOH C 18 318 61 HOH HOH . KA 6 HOH C 19 319 69 HOH HOH . KA 6 HOH C 20 320 71 HOH HOH . KA 6 HOH C 21 321 74 HOH HOH . KA 6 HOH C 22 322 79 HOH HOH . KA 6 HOH C 23 323 82 HOH HOH . KA 6 HOH C 24 324 83 HOH HOH . KA 6 HOH C 25 325 87 HOH HOH . KA 6 HOH C 26 326 91 HOH HOH . LA 6 HOH E 1 301 1 HOH HOH . LA 6 HOH E 2 302 14 HOH HOH . LA 6 HOH E 3 303 18 HOH HOH . LA 6 HOH E 4 304 22 HOH HOH . LA 6 HOH E 5 305 31 HOH HOH . LA 6 HOH E 6 306 32 HOH HOH . LA 6 HOH E 7 307 34 HOH HOH . LA 6 HOH E 8 308 35 HOH HOH . LA 6 HOH E 9 309 36 HOH HOH . LA 6 HOH E 10 310 38 HOH HOH . LA 6 HOH E 11 311 46 HOH HOH . LA 6 HOH E 12 312 50 HOH HOH . LA 6 HOH E 13 313 52 HOH HOH . LA 6 HOH E 14 314 55 HOH HOH . LA 6 HOH E 15 315 56 HOH HOH . LA 6 HOH E 16 316 57 HOH HOH . LA 6 HOH E 17 317 59 HOH HOH . LA 6 HOH E 18 318 67 HOH HOH . LA 6 HOH E 19 319 75 HOH HOH . LA 6 HOH E 20 320 76 HOH HOH . LA 6 HOH E 21 321 78 HOH HOH . LA 6 HOH E 22 322 80 HOH HOH . LA 6 HOH E 23 323 81 HOH HOH . LA 6 HOH E 24 324 84 HOH HOH . LA 6 HOH E 25 325 93 HOH HOH . LA 6 HOH E 26 326 94 HOH HOH . LA 6 HOH E 27 327 96 HOH HOH . LA 6 HOH E 28 328 98 HOH HOH . LA 6 HOH E 29 329 101 HOH HOH . MA 6 HOH G 1 301 2 HOH HOH . MA 6 HOH G 2 302 9 HOH HOH . MA 6 HOH G 3 303 11 HOH HOH . MA 6 HOH G 4 304 12 HOH HOH . MA 6 HOH G 5 305 16 HOH HOH . MA 6 HOH G 6 306 20 HOH HOH . MA 6 HOH G 7 307 23 HOH HOH . MA 6 HOH G 8 308 41 HOH HOH . MA 6 HOH G 9 309 51 HOH HOH . MA 6 HOH G 10 310 63 HOH HOH . MA 6 HOH G 11 311 65 HOH HOH . MA 6 HOH G 12 312 73 HOH HOH . MA 6 HOH G 13 313 86 HOH HOH . MA 6 HOH G 14 314 88 HOH HOH . MA 6 HOH G 15 315 97 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 TMQ . . . O 3 -6.658 45.061 32.199 1 30.49 ? N1 TMQ 202 C 1 HETATM 2 C C2 TMQ . . . O 3 -7.544 45.804 33.163 1 25.11 ? C2 TMQ 202 C 1 HETATM 3 N N3 TMQ . . . O 3 -6.97 46.984 33.93 1 30.3 ? N3 TMQ 202 C 1 HETATM 4 C C4 TMQ . . . O 3 -5.6 47.381 33.747 1 24.11 ? C4 TMQ 202 C 1 HETATM 5 C C3A TMQ . . . O 3 -5.254 45.466 32.008 1 26.65 ? C3A TMQ 202 C 1 HETATM 6 C C4A TMQ . . . O 3 -4.696 46.628 32.765 1 29.07 ? C4A TMQ 202 C 1 HETATM 7 C C5 TMQ . . . O 3 -3.197 47.065 32.535 1 29.17 ? C5 TMQ 202 C 1 HETATM 8 C C6 TMQ . . . O 3 -2.332 46.284 31.558 1 32.83 ? C6 TMQ 202 C 1 HETATM 9 C C7 TMQ . . . O 3 -2.9 45.104 30.781 1 30.79 ? C7 TMQ 202 C 1 HETATM 10 C C8 TMQ . . . O 3 -4.366 44.673 31.006 1 33.94 ? C8 TMQ 202 C 1 HETATM 11 C C9 TMQ . . . O 3 -0.883 46.749 31.405 1 34.25 ? C9 TMQ 202 C 1 HETATM 12 N N10 TMQ . . . O 3 -0.154 45.788 30.687 1 33.52 ? N10 TMQ 202 C 1 HETATM 13 C C11 TMQ . . . O 3 -0.415 45.677 29.295 1 33.67 ? C11 TMQ 202 C 1 HETATM 14 C C12 TMQ . . . O 3 -1.401 46.652 28.634 1 36.45 ? C12 TMQ 202 C 1 HETATM 15 C C13 TMQ . . . O 3 -1.675 46.523 27.12 1 42.66 ? C13 TMQ 202 C 1 HETATM 16 C C14 TMQ . . . O 3 -0.975 45.418 26.294 1 40.33 ? C14 TMQ 202 C 1 HETATM 17 C C15 TMQ . . . O 3 0.014 44.462 26.982 1 37.49 ? C15 TMQ 202 C 1 HETATM 18 C C16 TMQ . . . O 3 0.299 44.582 28.484 1 37.69 ? C16 TMQ 202 C 1 HETATM 19 C C17 TMQ . . . O 3 -2.567 48.297 33.188 1 25.24 ? C17 TMQ 202 C 1 HETATM 20 O O18 TMQ . . . O 3 -2.573 47.416 26.517 1 49.32 ? O18 TMQ 202 C 1 HETATM 21 O O19 TMQ . . . O 3 -1.187 45.267 24.915 1 49.65 ? O19 TMQ 202 C 1 HETATM 22 O O20 TMQ . . . O 3 0.679 43.487 26.232 1 38.93 ? O20 TMQ 202 C 1 HETATM 23 C C21 TMQ . . . O 3 -3.115 48.453 27.297 1 45.08 ? C21 TMQ 202 C 1 HETATM 24 C C22 TMQ . . . O 3 -2.081 46.088 24.206 1 51.6 ? C22 TMQ 202 C 1 HETATM 25 C C23 TMQ . . . O 3 1.472 42.543 26.902 1 41.7 ? C23 TMQ 202 C 1 HETATM 26 N N24 TMQ . . . O 3 -8.946 45.454 33.337 1 27.57 ? N24 TMQ 202 C 1 HETATM 27 N N25 TMQ . . . O 3 -5.121 48.467 34.554 1 26.07 ? N25 TMQ 202 C 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #