data_4M37 # _model_server_result.job_id zdMc6BWJjawyKrJuoAB43Q _model_server_result.datetime_utc '2024-12-27 02:17:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4m37 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 4M37 # _exptl.entry_id 4M37 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 131.26 _cell.angle_gamma 90 _cell.entry_id 4M37 _cell.length_a 130.591 _cell.length_b 40.926 _cell.length_c 90.838 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4M37 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag n _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 277 n n N HN1 SAH sing 278 n n N HN2 SAH sing 279 n n CA CB SAH sing 280 n n CA C SAH sing 281 n n CA HA SAH sing 282 n n CB CG SAH sing 283 n n CB HB1 SAH sing 284 n n CB HB2 SAH sing 285 n n CG SD SAH sing 286 n n CG HG1 SAH sing 287 n n CG HG2 SAH sing 288 n n SD C5' SAH sing 289 n n C O SAH doub 290 n n C OXT SAH sing 291 n n OXT HXT SAH sing 292 n n C5' C4' SAH sing 293 n n C5' "H5'1" SAH sing 294 n n C5' "H5'2" SAH sing 295 n n C4' O4' SAH sing 296 n n C4' C3' SAH sing 297 n n C4' H4' SAH sing 298 n n O4' C1' SAH sing 299 n n C3' O3' SAH sing 300 n n C3' C2' SAH sing 301 n n C3' H3' SAH sing 302 n n O3' HO3' SAH sing 303 n n C2' O2' SAH sing 304 n n C2' C1' SAH sing 305 n n C2' H2' SAH sing 306 n n O2' HO2' SAH sing 307 n n C1' N9 SAH sing 308 n n C1' H1' SAH sing 309 n n N9 C8 SAH sing 310 n y N9 C4 SAH sing 311 n y C8 N7 SAH doub 312 n y C8 H8 SAH sing 313 n n N7 C5 SAH sing 314 n y C5 C6 SAH sing 315 n y C5 C4 SAH doub 316 n y C6 N6 SAH sing 317 n n C6 N1 SAH doub 318 n y N6 HN61 SAH sing 319 n n N6 HN62 SAH sing 320 n n N1 C2 SAH sing 321 n y C2 N3 SAH doub 322 n y C2 H2 SAH sing 323 n n N3 C4 SAH sing 324 n y # _atom_sites.entry_id 4M37 _atom_sites.fract_transf_matrix[1][1] 0.007657 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006717 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024434 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014643 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SAH A 1 401 1 SAH SAH . C 3 HOH A 1 501 2 HOH HOH . C 3 HOH A 2 502 3 HOH HOH . C 3 HOH A 3 503 4 HOH HOH . C 3 HOH A 4 504 6 HOH HOH . C 3 HOH A 5 505 8 HOH HOH . C 3 HOH A 6 506 10 HOH HOH . C 3 HOH A 7 507 12 HOH HOH . C 3 HOH A 8 508 13 HOH HOH . C 3 HOH A 9 509 14 HOH HOH . C 3 HOH A 10 510 15 HOH HOH . C 3 HOH A 11 511 16 HOH HOH . C 3 HOH A 12 512 18 HOH HOH . C 3 HOH A 13 513 19 HOH HOH . C 3 HOH A 14 514 20 HOH HOH . C 3 HOH A 15 515 21 HOH HOH . C 3 HOH A 16 516 22 HOH HOH . C 3 HOH A 17 517 23 HOH HOH . C 3 HOH A 18 518 24 HOH HOH . C 3 HOH A 19 519 25 HOH HOH . C 3 HOH A 20 520 27 HOH HOH . C 3 HOH A 21 521 28 HOH HOH . C 3 HOH A 22 522 29 HOH HOH . C 3 HOH A 23 523 30 HOH HOH . C 3 HOH A 24 524 31 HOH HOH . C 3 HOH A 25 525 32 HOH HOH . C 3 HOH A 26 526 33 HOH HOH . C 3 HOH A 27 527 34 HOH HOH . C 3 HOH A 28 528 35 HOH HOH . C 3 HOH A 29 529 36 HOH HOH . C 3 HOH A 30 530 38 HOH HOH . C 3 HOH A 31 531 39 HOH HOH . C 3 HOH A 32 532 40 HOH HOH . C 3 HOH A 33 533 41 HOH HOH . C 3 HOH A 34 534 42 HOH HOH . C 3 HOH A 35 535 43 HOH HOH . C 3 HOH A 36 536 44 HOH HOH . C 3 HOH A 37 537 45 HOH HOH . C 3 HOH A 38 538 46 HOH HOH . C 3 HOH A 39 539 47 HOH HOH . C 3 HOH A 40 540 48 HOH HOH . C 3 HOH A 41 541 49 HOH HOH . C 3 HOH A 42 542 50 HOH HOH . C 3 HOH A 43 543 51 HOH HOH . C 3 HOH A 44 544 52 HOH HOH . C 3 HOH A 45 545 54 HOH HOH . C 3 HOH A 46 546 55 HOH HOH . C 3 HOH A 47 547 56 HOH HOH . C 3 HOH A 48 548 57 HOH HOH . C 3 HOH A 49 549 58 HOH HOH . C 3 HOH A 50 550 59 HOH HOH . C 3 HOH A 51 551 60 HOH HOH . C 3 HOH A 52 552 61 HOH HOH . C 3 HOH A 53 553 62 HOH HOH . C 3 HOH A 54 554 63 HOH HOH . C 3 HOH A 55 555 64 HOH HOH . C 3 HOH A 56 556 65 HOH HOH . C 3 HOH A 57 557 66 HOH HOH . C 3 HOH A 58 558 67 HOH HOH . C 3 HOH A 59 559 68 HOH HOH . C 3 HOH A 60 560 69 HOH HOH . C 3 HOH A 61 561 70 HOH HOH . C 3 HOH A 62 562 71 HOH HOH . C 3 HOH A 63 563 72 HOH HOH . C 3 HOH A 64 564 73 HOH HOH . C 3 HOH A 65 565 74 HOH HOH . C 3 HOH A 66 566 75 HOH HOH . C 3 HOH A 67 567 76 HOH HOH . C 3 HOH A 68 568 77 HOH HOH . C 3 HOH A 69 569 78 HOH HOH . C 3 HOH A 70 570 79 HOH HOH . C 3 HOH A 71 571 80 HOH HOH . C 3 HOH A 72 572 81 HOH HOH . C 3 HOH A 73 573 82 HOH HOH . C 3 HOH A 74 574 83 HOH HOH . C 3 HOH A 75 575 84 HOH HOH . C 3 HOH A 76 576 85 HOH HOH . C 3 HOH A 77 577 86 HOH HOH . C 3 HOH A 78 578 87 HOH HOH . C 3 HOH A 79 579 88 HOH HOH . C 3 HOH A 80 580 89 HOH HOH . C 3 HOH A 81 581 90 HOH HOH . C 3 HOH A 82 582 91 HOH HOH . C 3 HOH A 83 583 92 HOH HOH . C 3 HOH A 84 584 93 HOH HOH . C 3 HOH A 85 585 94 HOH HOH . C 3 HOH A 86 586 95 HOH HOH . C 3 HOH A 87 587 96 HOH HOH . C 3 HOH A 88 588 97 HOH HOH . C 3 HOH A 89 589 98 HOH HOH . C 3 HOH A 90 590 99 HOH HOH . C 3 HOH A 91 591 100 HOH HOH . C 3 HOH A 92 592 101 HOH HOH . C 3 HOH A 93 593 102 HOH HOH . C 3 HOH A 94 594 103 HOH HOH . C 3 HOH A 95 595 104 HOH HOH . C 3 HOH A 96 596 105 HOH HOH . C 3 HOH A 97 597 106 HOH HOH . C 3 HOH A 98 598 107 HOH HOH . C 3 HOH A 99 599 108 HOH HOH . C 3 HOH A 100 600 109 HOH HOH . C 3 HOH A 101 601 110 HOH HOH . C 3 HOH A 102 602 111 HOH HOH . C 3 HOH A 103 603 112 HOH HOH . C 3 HOH A 104 604 113 HOH HOH . C 3 HOH A 105 605 114 HOH HOH . C 3 HOH A 106 606 115 HOH HOH . C 3 HOH A 107 607 116 HOH HOH . C 3 HOH A 108 608 117 HOH HOH . C 3 HOH A 109 609 118 HOH HOH . C 3 HOH A 110 610 119 HOH HOH . C 3 HOH A 111 611 120 HOH HOH . C 3 HOH A 112 612 121 HOH HOH . C 3 HOH A 113 613 122 HOH HOH . C 3 HOH A 114 614 123 HOH HOH . C 3 HOH A 115 615 124 HOH HOH . C 3 HOH A 116 616 125 HOH HOH . C 3 HOH A 117 617 126 HOH HOH . C 3 HOH A 118 618 127 HOH HOH . C 3 HOH A 119 619 128 HOH HOH . C 3 HOH A 120 620 129 HOH HOH . C 3 HOH A 121 621 130 HOH HOH . C 3 HOH A 122 622 131 HOH HOH . C 3 HOH A 123 623 132 HOH HOH . C 3 HOH A 124 624 133 HOH HOH . C 3 HOH A 125 625 134 HOH HOH . C 3 HOH A 126 626 135 HOH HOH . C 3 HOH A 127 627 136 HOH HOH . C 3 HOH A 128 628 137 HOH HOH . C 3 HOH A 129 629 138 HOH HOH . C 3 HOH A 130 630 139 HOH HOH . C 3 HOH A 131 631 140 HOH HOH . C 3 HOH A 132 632 141 HOH HOH . C 3 HOH A 133 633 142 HOH HOH . C 3 HOH A 134 634 143 HOH HOH . C 3 HOH A 135 635 144 HOH HOH . C 3 HOH A 136 636 145 HOH HOH . C 3 HOH A 137 637 147 HOH HOH . C 3 HOH A 138 638 148 HOH HOH . C 3 HOH A 139 639 149 HOH HOH . C 3 HOH A 140 640 150 HOH HOH . C 3 HOH A 141 641 152 HOH HOH . C 3 HOH A 142 642 153 HOH HOH . C 3 HOH A 143 643 154 HOH HOH . C 3 HOH A 144 644 155 HOH HOH . C 3 HOH A 145 645 156 HOH HOH . C 3 HOH A 146 646 158 HOH HOH . C 3 HOH A 147 647 159 HOH HOH . C 3 HOH A 148 648 160 HOH HOH . C 3 HOH A 149 649 161 HOH HOH . C 3 HOH A 150 650 162 HOH HOH . C 3 HOH A 151 651 163 HOH HOH . C 3 HOH A 152 652 164 HOH HOH . C 3 HOH A 153 653 165 HOH HOH . C 3 HOH A 154 654 166 HOH HOH . C 3 HOH A 155 655 167 HOH HOH . C 3 HOH A 156 656 168 HOH HOH . C 3 HOH A 157 657 169 HOH HOH . C 3 HOH A 158 658 170 HOH HOH . C 3 HOH A 159 659 171 HOH HOH . C 3 HOH A 160 660 172 HOH HOH . C 3 HOH A 161 661 173 HOH HOH . C 3 HOH A 162 662 174 HOH HOH . C 3 HOH A 163 663 175 HOH HOH . C 3 HOH A 164 664 176 HOH HOH . C 3 HOH A 165 665 177 HOH HOH . C 3 HOH A 166 666 178 HOH HOH . C 3 HOH A 167 667 179 HOH HOH . C 3 HOH A 168 668 180 HOH HOH . C 3 HOH A 169 669 181 HOH HOH . C 3 HOH A 170 670 182 HOH HOH . C 3 HOH A 171 671 183 HOH HOH . C 3 HOH A 172 672 184 HOH HOH . C 3 HOH A 173 673 185 HOH HOH . C 3 HOH A 174 674 187 HOH HOH . C 3 HOH A 175 675 188 HOH HOH . C 3 HOH A 176 676 189 HOH HOH . C 3 HOH A 177 677 190 HOH HOH . C 3 HOH A 178 678 191 HOH HOH . C 3 HOH A 179 679 192 HOH HOH . C 3 HOH A 180 680 193 HOH HOH . C 3 HOH A 181 681 194 HOH HOH . C 3 HOH A 182 682 195 HOH HOH . C 3 HOH A 183 683 196 HOH HOH . C 3 HOH A 184 684 197 HOH HOH . C 3 HOH A 185 685 198 HOH HOH . C 3 HOH A 186 686 199 HOH HOH . C 3 HOH A 187 687 200 HOH HOH . C 3 HOH A 188 688 201 HOH HOH . C 3 HOH A 189 689 202 HOH HOH . C 3 HOH A 190 690 203 HOH HOH . C 3 HOH A 191 691 204 HOH HOH . C 3 HOH A 192 692 205 HOH HOH . C 3 HOH A 193 693 206 HOH HOH . C 3 HOH A 194 694 207 HOH HOH . C 3 HOH A 195 695 208 HOH HOH . C 3 HOH A 196 696 210 HOH HOH . C 3 HOH A 197 697 211 HOH HOH . C 3 HOH A 198 698 212 HOH HOH . C 3 HOH A 199 699 213 HOH HOH . C 3 HOH A 200 700 214 HOH HOH . C 3 HOH A 201 701 215 HOH HOH . C 3 HOH A 202 702 216 HOH HOH . C 3 HOH A 203 703 217 HOH HOH . C 3 HOH A 204 704 219 HOH HOH . C 3 HOH A 205 705 220 HOH HOH . C 3 HOH A 206 706 221 HOH HOH . C 3 HOH A 207 707 222 HOH HOH . C 3 HOH A 208 708 225 HOH HOH . C 3 HOH A 209 709 227 HOH HOH . C 3 HOH A 210 710 228 HOH HOH . C 3 HOH A 211 711 229 HOH HOH . C 3 HOH A 212 712 230 HOH HOH . C 3 HOH A 213 713 231 HOH HOH . C 3 HOH A 214 714 232 HOH HOH . C 3 HOH A 215 715 234 HOH HOH . C 3 HOH A 216 716 235 HOH HOH . C 3 HOH A 217 717 236 HOH HOH . C 3 HOH A 218 718 237 HOH HOH . C 3 HOH A 219 719 238 HOH HOH . C 3 HOH A 220 720 239 HOH HOH . C 3 HOH A 221 721 240 HOH HOH . C 3 HOH A 222 722 241 HOH HOH . C 3 HOH A 223 723 243 HOH HOH . C 3 HOH A 224 724 244 HOH HOH . C 3 HOH A 225 725 245 HOH HOH . C 3 HOH A 226 726 247 HOH HOH . C 3 HOH A 227 727 249 HOH HOH . C 3 HOH A 228 728 250 HOH HOH . C 3 HOH A 229 729 252 HOH HOH . C 3 HOH A 230 730 255 HOH HOH . C 3 HOH A 231 731 256 HOH HOH . C 3 HOH A 232 732 257 HOH HOH . C 3 HOH A 233 733 258 HOH HOH . C 3 HOH A 234 734 264 HOH HOH . C 3 HOH A 235 735 265 HOH HOH . C 3 HOH A 236 736 266 HOH HOH . C 3 HOH A 237 737 267 HOH HOH . C 3 HOH A 238 738 268 HOH HOH . C 3 HOH A 239 739 269 HOH HOH . C 3 HOH A 240 740 270 HOH HOH . C 3 HOH A 241 741 271 HOH HOH . C 3 HOH A 242 742 272 HOH HOH . C 3 HOH A 243 743 273 HOH HOH . C 3 HOH A 244 744 274 HOH HOH . C 3 HOH A 245 745 276 HOH HOH . C 3 HOH A 246 746 277 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . B 2 -5.701 -0.357 22.142 1 31.34 ? N SAH 401 A 1 HETATM 2 C CA SAH . . . B 2 -4.896 0.063 20.961 1 29.08 ? CA SAH 401 A 1 HETATM 3 C CB SAH . . . B 2 -5.602 -0.324 19.665 1 30.29 ? CB SAH 401 A 1 HETATM 4 C CG SAH . . . B 2 -4.734 -1.31 18.888 1 22.89 ? CG SAH 401 A 1 HETATM 5 S SD SAH . . . B 2 -5.322 -1.44 17.239 1 36.68 ? SD SAH 401 A 1 HETATM 6 C C SAH . . . B 2 -4.764 1.548 20.962 1 31.01 ? C SAH 401 A 1 HETATM 7 O O SAH . . . B 2 -5.764 2.253 21.062 1 34.55 ? O SAH 401 A 1 HETATM 8 O OXT SAH . . . B 2 -3.683 2.107 20.826 1 32.95 ? OXT SAH 401 A 1 HETATM 9 C C5' SAH . . . B 2 -6.455 -2.788 17.409 1 22.57 ? C5' SAH 401 A 1 HETATM 10 C C4' SAH . . . B 2 -5.8 -4.015 18.056 1 22.4 ? C4' SAH 401 A 1 HETATM 11 O O4' SAH . . . B 2 -6.794 -4.976 18.407 1 21.98 ? O4' SAH 401 A 1 HETATM 12 C C3' SAH . . . B 2 -4.836 -4.742 17.135 1 22.22 ? C3' SAH 401 A 1 HETATM 13 O O3' SAH . . . B 2 -3.629 -4.96 17.887 1 21.55 ? O3' SAH 401 A 1 HETATM 14 C C2' SAH . . . B 2 -5.531 -6.052 16.764 1 21.35 ? C2' SAH 401 A 1 HETATM 15 O O2' SAH . . . B 2 -4.608 -7.143 16.692 1 23.41 ? O2' SAH 401 A 1 HETATM 16 C C1' SAH . . . B 2 -6.481 -6.294 17.919 1 21.33 ? C1' SAH 401 A 1 HETATM 17 N N9 SAH . . . B 2 -7.841 -6.83 17.693 1 18.48 ? N9 SAH 401 A 1 HETATM 18 C C8 SAH . . . B 2 -8.73 -6.445 16.752 1 20.65 ? C8 SAH 401 A 1 HETATM 19 N N7 SAH . . . B 2 -9.912 -7.098 16.913 1 19.55 ? N7 SAH 401 A 1 HETATM 20 C C5 SAH . . . B 2 -9.791 -7.888 17.994 1 20.25 ? C5 SAH 401 A 1 HETATM 21 C C6 SAH . . . B 2 -10.669 -8.827 18.723 1 19.58 ? C6 SAH 401 A 1 HETATM 22 N N6 SAH . . . B 2 -11.932 -9.039 18.288 1 19.53 ? N6 SAH 401 A 1 HETATM 23 N N1 SAH . . . B 2 -10.163 -9.457 19.816 1 19.73 ? N1 SAH 401 A 1 HETATM 24 C C2 SAH . . . B 2 -8.902 -9.238 20.243 1 17.66 ? C2 SAH 401 A 1 HETATM 25 N N3 SAH . . . B 2 -8.049 -8.393 19.629 1 18.28 ? N3 SAH 401 A 1 HETATM 26 C C4 SAH . . . B 2 -8.434 -7.697 18.52 1 18.7 ? C4 SAH 401 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 212 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 26 #