data_4M4A
#
_model_server_result.job_id            iQt0t7o7dYYmxOiwORmFpg 
_model_server_result.datetime_utc      '2024-10-31 07:25:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4m4a 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":203}' 
#
_entry.id    4M4A 
#
_exptl.entry_id    4M4A 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4M4A 
_cell.length_a            53.573 
_cell.length_b            53.573 
_cell.length_c            191.87 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4M4A 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 E N N 
? 5 F N N 
? 5 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 87 A HIS 87 1_555 C FE HEM . A HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? 
metalc ? metalc2 C FE HEM . A HEM 201 1_555 D N NSM . A NSM 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? 
metalc ? metalc3 C FE HEM . A HEM 201 1_555 D O1 NSM . A NSM 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.699 ? 
metalc ? metalc4 B NE2 HIS 92 B HIS 92 1_555 G FE HEM . B HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? 
metalc ? metalc5 G FE HEM . B HEM 201 1_555 H N NSM . B NSM 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
metalc ? metalc6 G FE HEM . B HEM 201 1_555 H O1 NSM . B NSM 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.681 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     4M4A 
_atom_sites.fract_transf_matrix[1][1]    0.018666 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018666 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005212 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 HEM A 1 201 1 HEM HEM . 
D 4 NSM A 1 202 1 NSM NSM . 
E 5 GOL A 1 203 3 GOL GOL . 
F 5 GOL A 1 204 5 GOL GOL . 
G 3 HEM B 1 201 1 HEM HEM . 
H 4 NSM B 1 202 2 NSM NSM . 
I 5 GOL B 1 203 4 GOL GOL . 
J 6 HOH A 1 301 1 HOH HOH . 
J 6 HOH A 2 302 4 HOH HOH . 
J 6 HOH A 3 303 7 HOH HOH . 
J 6 HOH A 4 304 9 HOH HOH . 
J 6 HOH A 5 305 10 HOH HOH . 
J 6 HOH A 6 306 15 HOH HOH . 
J 6 HOH A 7 307 17 HOH HOH . 
J 6 HOH A 8 308 19 HOH HOH . 
J 6 HOH A 9 309 21 HOH HOH . 
J 6 HOH A 10 310 22 HOH HOH . 
J 6 HOH A 11 311 23 HOH HOH . 
J 6 HOH A 12 312 26 HOH HOH . 
J 6 HOH A 13 313 27 HOH HOH . 
J 6 HOH A 14 314 28 HOH HOH . 
J 6 HOH A 15 315 29 HOH HOH . 
J 6 HOH A 16 316 30 HOH HOH . 
J 6 HOH A 17 317 31 HOH HOH . 
J 6 HOH A 18 318 32 HOH HOH . 
J 6 HOH A 19 319 34 HOH HOH . 
J 6 HOH A 20 320 36 HOH HOH . 
J 6 HOH A 21 321 37 HOH HOH . 
J 6 HOH A 22 322 38 HOH HOH . 
J 6 HOH A 23 323 39 HOH HOH . 
J 6 HOH A 24 324 41 HOH HOH . 
J 6 HOH A 25 325 51 HOH HOH . 
J 6 HOH A 26 326 52 HOH HOH . 
J 6 HOH A 27 327 53 HOH HOH . 
J 6 HOH A 28 328 54 HOH HOH . 
J 6 HOH A 29 329 55 HOH HOH . 
J 6 HOH A 30 330 58 HOH HOH . 
J 6 HOH A 31 331 61 HOH HOH . 
J 6 HOH A 32 332 64 HOH HOH . 
J 6 HOH A 33 333 65 HOH HOH . 
J 6 HOH A 34 334 66 HOH HOH . 
J 6 HOH A 35 335 67 HOH HOH . 
J 6 HOH A 36 336 69 HOH HOH . 
J 6 HOH A 37 337 70 HOH HOH . 
J 6 HOH A 38 338 71 HOH HOH . 
J 6 HOH A 39 339 73 HOH HOH . 
J 6 HOH A 40 340 78 HOH HOH . 
J 6 HOH A 41 341 79 HOH HOH . 
J 6 HOH A 42 342 81 HOH HOH . 
J 6 HOH A 43 343 82 HOH HOH . 
J 6 HOH A 44 344 84 HOH HOH . 
J 6 HOH A 45 345 91 HOH HOH . 
J 6 HOH A 46 346 93 HOH HOH . 
J 6 HOH A 47 347 94 HOH HOH . 
J 6 HOH A 48 348 96 HOH HOH . 
J 6 HOH A 49 349 97 HOH HOH . 
J 6 HOH A 50 350 98 HOH HOH . 
J 6 HOH A 51 351 101 HOH HOH . 
J 6 HOH A 52 352 102 HOH HOH . 
J 6 HOH A 53 353 107 HOH HOH . 
J 6 HOH A 54 354 108 HOH HOH . 
J 6 HOH A 55 355 109 HOH HOH . 
J 6 HOH A 56 356 112 HOH HOH . 
J 6 HOH A 57 357 113 HOH HOH . 
J 6 HOH A 58 358 114 HOH HOH . 
J 6 HOH A 59 359 115 HOH HOH . 
J 6 HOH A 60 360 116 HOH HOH . 
J 6 HOH A 61 361 118 HOH HOH . 
J 6 HOH A 62 362 119 HOH HOH . 
J 6 HOH A 63 363 120 HOH HOH . 
J 6 HOH A 64 364 125 HOH HOH . 
J 6 HOH A 65 365 127 HOH HOH . 
J 6 HOH A 66 366 129 HOH HOH . 
J 6 HOH A 67 367 130 HOH HOH . 
J 6 HOH A 68 368 131 HOH HOH . 
J 6 HOH A 69 369 133 HOH HOH . 
J 6 HOH A 70 370 140 HOH HOH . 
J 6 HOH A 71 371 141 HOH HOH . 
J 6 HOH A 72 372 143 HOH HOH . 
K 6 HOH B 1 301 2 HOH HOH . 
K 6 HOH B 2 302 3 HOH HOH . 
K 6 HOH B 3 303 5 HOH HOH . 
K 6 HOH B 4 304 6 HOH HOH . 
K 6 HOH B 5 305 8 HOH HOH . 
K 6 HOH B 6 306 11 HOH HOH . 
K 6 HOH B 7 307 12 HOH HOH . 
K 6 HOH B 8 308 13 HOH HOH . 
K 6 HOH B 9 309 14 HOH HOH . 
K 6 HOH B 10 310 16 HOH HOH . 
K 6 HOH B 11 311 18 HOH HOH . 
K 6 HOH B 12 312 20 HOH HOH . 
K 6 HOH B 13 313 24 HOH HOH . 
K 6 HOH B 14 314 25 HOH HOH . 
K 6 HOH B 15 315 33 HOH HOH . 
K 6 HOH B 16 316 35 HOH HOH . 
K 6 HOH B 17 317 40 HOH HOH . 
K 6 HOH B 18 318 42 HOH HOH . 
K 6 HOH B 19 319 43 HOH HOH . 
K 6 HOH B 20 320 44 HOH HOH . 
K 6 HOH B 21 321 45 HOH HOH . 
K 6 HOH B 22 322 46 HOH HOH . 
K 6 HOH B 23 323 47 HOH HOH . 
K 6 HOH B 24 324 48 HOH HOH . 
K 6 HOH B 25 325 49 HOH HOH . 
K 6 HOH B 26 326 50 HOH HOH . 
K 6 HOH B 27 327 56 HOH HOH . 
K 6 HOH B 28 328 57 HOH HOH . 
K 6 HOH B 29 329 59 HOH HOH . 
K 6 HOH B 30 330 60 HOH HOH . 
K 6 HOH B 31 331 62 HOH HOH . 
K 6 HOH B 32 332 63 HOH HOH . 
K 6 HOH B 33 333 68 HOH HOH . 
K 6 HOH B 34 334 72 HOH HOH . 
K 6 HOH B 35 335 74 HOH HOH . 
K 6 HOH B 36 336 75 HOH HOH . 
K 6 HOH B 37 337 76 HOH HOH . 
K 6 HOH B 38 338 77 HOH HOH . 
K 6 HOH B 39 339 80 HOH HOH . 
K 6 HOH B 40 340 83 HOH HOH . 
K 6 HOH B 41 341 85 HOH HOH . 
K 6 HOH B 42 342 86 HOH HOH . 
K 6 HOH B 43 343 87 HOH HOH . 
K 6 HOH B 44 344 88 HOH HOH . 
K 6 HOH B 45 345 89 HOH HOH . 
K 6 HOH B 46 346 90 HOH HOH . 
K 6 HOH B 47 347 92 HOH HOH . 
K 6 HOH B 48 348 95 HOH HOH . 
K 6 HOH B 49 349 99 HOH HOH . 
K 6 HOH B 50 350 100 HOH HOH . 
K 6 HOH B 51 351 103 HOH HOH . 
K 6 HOH B 52 352 104 HOH HOH . 
K 6 HOH B 53 353 105 HOH HOH . 
K 6 HOH B 54 354 106 HOH HOH . 
K 6 HOH B 55 355 110 HOH HOH . 
K 6 HOH B 56 356 111 HOH HOH . 
K 6 HOH B 57 357 117 HOH HOH . 
K 6 HOH B 58 358 121 HOH HOH . 
K 6 HOH B 59 359 122 HOH HOH . 
K 6 HOH B 60 360 123 HOH HOH . 
K 6 HOH B 61 361 124 HOH HOH . 
K 6 HOH B 62 362 126 HOH HOH . 
K 6 HOH B 63 363 128 HOH HOH . 
K 6 HOH B 64 364 132 HOH HOH . 
K 6 HOH B 65 365 134 HOH HOH . 
K 6 HOH B 66 366 135 HOH HOH . 
K 6 HOH B 67 367 136 HOH HOH . 
K 6 HOH B 68 368 137 HOH HOH . 
K 6 HOH B 69 369 138 HOH HOH . 
K 6 HOH B 70 370 139 HOH HOH . 
K 6 HOH B 71 371 142 HOH HOH . 
K 6 HOH B 72 372 144 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . E 5 4.202 1.896 27.561 1 49.69 ? C1 GOL 203 A 1 
HETATM 2 O O1 GOL . . . E 5 3.051 2.69 27.356 1 49.69 ? O1 GOL 203 A 1 
HETATM 3 C C2 GOL . . . E 5 3.792 0.552 28.15 1 49.69 ? C2 GOL 203 A 1 
HETATM 4 O O2 GOL . . . E 5 3.592 0.701 29.536 1 49.69 ? O2 GOL 203 A 1 
HETATM 5 C C3 GOL . . . E 5 4.874 -0.487 27.875 1 49.69 ? C3 GOL 203 A 1 
HETATM 6 O O3 GOL . . . E 5 6.132 0.006 28.284 1 49.69 ? O3 GOL 203 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           329 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#