data_4M4A # _model_server_result.job_id U6B0IpvHzwyw376nBBDFtg _model_server_result.datetime_utc '2024-12-02 07:25:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4m4a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":203}' # _entry.id 4M4A # _exptl.entry_id 4M4A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4M4A _cell.length_a 53.573 _cell.length_b 53.573 _cell.length_c 191.87 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4M4A _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N ? 5 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 87 A HIS 87 1_555 C FE HEM . A HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? metalc ? metalc2 C FE HEM . A HEM 201 1_555 D N NSM . A NSM 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? metalc ? metalc3 C FE HEM . A HEM 201 1_555 D O1 NSM . A NSM 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.699 ? metalc ? metalc4 B NE2 HIS 92 B HIS 92 1_555 G FE HEM . B HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? metalc ? metalc5 G FE HEM . B HEM 201 1_555 H N NSM . B NSM 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? metalc ? metalc6 G FE HEM . B HEM 201 1_555 H O1 NSM . B NSM 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.681 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 4M4A _atom_sites.fract_transf_matrix[1][1] 0.018666 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018666 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005212 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 HEM A 1 201 1 HEM HEM . D 4 NSM A 1 202 1 NSM NSM . E 5 GOL A 1 203 3 GOL GOL . F 5 GOL A 1 204 5 GOL GOL . G 3 HEM B 1 201 1 HEM HEM . H 4 NSM B 1 202 2 NSM NSM . I 5 GOL B 1 203 4 GOL GOL . J 6 HOH A 1 301 1 HOH HOH . J 6 HOH A 2 302 4 HOH HOH . J 6 HOH A 3 303 7 HOH HOH . J 6 HOH A 4 304 9 HOH HOH . J 6 HOH A 5 305 10 HOH HOH . J 6 HOH A 6 306 15 HOH HOH . J 6 HOH A 7 307 17 HOH HOH . J 6 HOH A 8 308 19 HOH HOH . J 6 HOH A 9 309 21 HOH HOH . J 6 HOH A 10 310 22 HOH HOH . J 6 HOH A 11 311 23 HOH HOH . J 6 HOH A 12 312 26 HOH HOH . J 6 HOH A 13 313 27 HOH HOH . J 6 HOH A 14 314 28 HOH HOH . J 6 HOH A 15 315 29 HOH HOH . J 6 HOH A 16 316 30 HOH HOH . J 6 HOH A 17 317 31 HOH HOH . J 6 HOH A 18 318 32 HOH HOH . J 6 HOH A 19 319 34 HOH HOH . J 6 HOH A 20 320 36 HOH HOH . J 6 HOH A 21 321 37 HOH HOH . J 6 HOH A 22 322 38 HOH HOH . J 6 HOH A 23 323 39 HOH HOH . J 6 HOH A 24 324 41 HOH HOH . J 6 HOH A 25 325 51 HOH HOH . J 6 HOH A 26 326 52 HOH HOH . J 6 HOH A 27 327 53 HOH HOH . J 6 HOH A 28 328 54 HOH HOH . J 6 HOH A 29 329 55 HOH HOH . J 6 HOH A 30 330 58 HOH HOH . J 6 HOH A 31 331 61 HOH HOH . J 6 HOH A 32 332 64 HOH HOH . J 6 HOH A 33 333 65 HOH HOH . J 6 HOH A 34 334 66 HOH HOH . J 6 HOH A 35 335 67 HOH HOH . J 6 HOH A 36 336 69 HOH HOH . J 6 HOH A 37 337 70 HOH HOH . J 6 HOH A 38 338 71 HOH HOH . J 6 HOH A 39 339 73 HOH HOH . J 6 HOH A 40 340 78 HOH HOH . J 6 HOH A 41 341 79 HOH HOH . J 6 HOH A 42 342 81 HOH HOH . J 6 HOH A 43 343 82 HOH HOH . J 6 HOH A 44 344 84 HOH HOH . J 6 HOH A 45 345 91 HOH HOH . J 6 HOH A 46 346 93 HOH HOH . J 6 HOH A 47 347 94 HOH HOH . J 6 HOH A 48 348 96 HOH HOH . J 6 HOH A 49 349 97 HOH HOH . J 6 HOH A 50 350 98 HOH HOH . J 6 HOH A 51 351 101 HOH HOH . J 6 HOH A 52 352 102 HOH HOH . J 6 HOH A 53 353 107 HOH HOH . J 6 HOH A 54 354 108 HOH HOH . J 6 HOH A 55 355 109 HOH HOH . J 6 HOH A 56 356 112 HOH HOH . J 6 HOH A 57 357 113 HOH HOH . J 6 HOH A 58 358 114 HOH HOH . J 6 HOH A 59 359 115 HOH HOH . J 6 HOH A 60 360 116 HOH HOH . J 6 HOH A 61 361 118 HOH HOH . J 6 HOH A 62 362 119 HOH HOH . J 6 HOH A 63 363 120 HOH HOH . J 6 HOH A 64 364 125 HOH HOH . J 6 HOH A 65 365 127 HOH HOH . J 6 HOH A 66 366 129 HOH HOH . J 6 HOH A 67 367 130 HOH HOH . J 6 HOH A 68 368 131 HOH HOH . J 6 HOH A 69 369 133 HOH HOH . J 6 HOH A 70 370 140 HOH HOH . J 6 HOH A 71 371 141 HOH HOH . J 6 HOH A 72 372 143 HOH HOH . K 6 HOH B 1 301 2 HOH HOH . K 6 HOH B 2 302 3 HOH HOH . K 6 HOH B 3 303 5 HOH HOH . K 6 HOH B 4 304 6 HOH HOH . K 6 HOH B 5 305 8 HOH HOH . K 6 HOH B 6 306 11 HOH HOH . K 6 HOH B 7 307 12 HOH HOH . K 6 HOH B 8 308 13 HOH HOH . K 6 HOH B 9 309 14 HOH HOH . K 6 HOH B 10 310 16 HOH HOH . K 6 HOH B 11 311 18 HOH HOH . K 6 HOH B 12 312 20 HOH HOH . K 6 HOH B 13 313 24 HOH HOH . K 6 HOH B 14 314 25 HOH HOH . K 6 HOH B 15 315 33 HOH HOH . K 6 HOH B 16 316 35 HOH HOH . K 6 HOH B 17 317 40 HOH HOH . K 6 HOH B 18 318 42 HOH HOH . K 6 HOH B 19 319 43 HOH HOH . K 6 HOH B 20 320 44 HOH HOH . K 6 HOH B 21 321 45 HOH HOH . K 6 HOH B 22 322 46 HOH HOH . K 6 HOH B 23 323 47 HOH HOH . K 6 HOH B 24 324 48 HOH HOH . K 6 HOH B 25 325 49 HOH HOH . K 6 HOH B 26 326 50 HOH HOH . K 6 HOH B 27 327 56 HOH HOH . K 6 HOH B 28 328 57 HOH HOH . K 6 HOH B 29 329 59 HOH HOH . K 6 HOH B 30 330 60 HOH HOH . K 6 HOH B 31 331 62 HOH HOH . K 6 HOH B 32 332 63 HOH HOH . K 6 HOH B 33 333 68 HOH HOH . K 6 HOH B 34 334 72 HOH HOH . K 6 HOH B 35 335 74 HOH HOH . K 6 HOH B 36 336 75 HOH HOH . K 6 HOH B 37 337 76 HOH HOH . K 6 HOH B 38 338 77 HOH HOH . K 6 HOH B 39 339 80 HOH HOH . K 6 HOH B 40 340 83 HOH HOH . K 6 HOH B 41 341 85 HOH HOH . K 6 HOH B 42 342 86 HOH HOH . K 6 HOH B 43 343 87 HOH HOH . K 6 HOH B 44 344 88 HOH HOH . K 6 HOH B 45 345 89 HOH HOH . K 6 HOH B 46 346 90 HOH HOH . K 6 HOH B 47 347 92 HOH HOH . K 6 HOH B 48 348 95 HOH HOH . K 6 HOH B 49 349 99 HOH HOH . K 6 HOH B 50 350 100 HOH HOH . K 6 HOH B 51 351 103 HOH HOH . K 6 HOH B 52 352 104 HOH HOH . K 6 HOH B 53 353 105 HOH HOH . K 6 HOH B 54 354 106 HOH HOH . K 6 HOH B 55 355 110 HOH HOH . K 6 HOH B 56 356 111 HOH HOH . K 6 HOH B 57 357 117 HOH HOH . K 6 HOH B 58 358 121 HOH HOH . K 6 HOH B 59 359 122 HOH HOH . K 6 HOH B 60 360 123 HOH HOH . K 6 HOH B 61 361 124 HOH HOH . K 6 HOH B 62 362 126 HOH HOH . K 6 HOH B 63 363 128 HOH HOH . K 6 HOH B 64 364 132 HOH HOH . K 6 HOH B 65 365 134 HOH HOH . K 6 HOH B 66 366 135 HOH HOH . K 6 HOH B 67 367 136 HOH HOH . K 6 HOH B 68 368 137 HOH HOH . K 6 HOH B 69 369 138 HOH HOH . K 6 HOH B 70 370 139 HOH HOH . K 6 HOH B 71 371 142 HOH HOH . K 6 HOH B 72 372 144 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 5 4.202 1.896 27.561 1 49.69 ? C1 GOL 203 A 1 HETATM 2 O O1 GOL . . . E 5 3.051 2.69 27.356 1 49.69 ? O1 GOL 203 A 1 HETATM 3 C C2 GOL . . . E 5 3.792 0.552 28.15 1 49.69 ? C2 GOL 203 A 1 HETATM 4 O O2 GOL . . . E 5 3.592 0.701 29.536 1 49.69 ? O2 GOL 203 A 1 HETATM 5 C C3 GOL . . . E 5 4.874 -0.487 27.875 1 49.69 ? C3 GOL 203 A 1 HETATM 6 O O3 GOL . . . E 5 6.132 0.006 28.284 1 49.69 ? O3 GOL 203 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #