data_4M4B # _model_server_result.job_id d4gixioBiHeuoJ-O_FVdXw _model_server_result.datetime_utc '2024-11-16 09:45:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4m4b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 4M4B # _exptl.entry_id 4M4B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4M4B _cell.length_a 53.443 _cell.length_b 53.443 _cell.length_c 193.581 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4M4B _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 87 A HIS 87 1_555 C FE HEM . A HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc2 C FE HEM . A HEM 201 1_555 E N NOE . A NOE 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? metalc ? metalc3 C FE HEM . A HEM 201 1_555 E O1 NOE . A NOE 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.602 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 142 n n CHA C4D HEM doub 143 n n CHA HHA HEM sing 144 n n CHB C4A HEM sing 145 n n CHB C1B HEM doub 146 n n CHB HHB HEM sing 147 n n CHC C4B HEM sing 148 n n CHC C1C HEM doub 149 n n CHC HHC HEM sing 150 n n CHD C4C HEM doub 151 n n CHD C1D HEM sing 152 n n CHD HHD HEM sing 153 n n C1A C2A HEM doub 154 n y C1A NA HEM sing 155 n y C2A C3A HEM sing 156 n y C2A CAA HEM sing 157 n n C3A C4A HEM doub 158 n y C3A CMA HEM sing 159 n n C4A NA HEM sing 160 n y CMA HMA HEM sing 161 n n CMA HMAA HEM sing 162 n n CMA HMAB HEM sing 163 n n CAA CBA HEM sing 164 n n CAA HAA HEM sing 165 n n CAA HAAA HEM sing 166 n n CBA CGA HEM sing 167 n n CBA HBA HEM sing 168 n n CBA HBAA HEM sing 169 n n CGA O1A HEM doub 170 n n CGA O2A HEM sing 171 n n C1B C2B HEM sing 172 n n C1B NB HEM sing 173 n n C2B C3B HEM doub 174 n n C2B CMB HEM sing 175 n n C3B C4B HEM sing 176 n n C3B CAB HEM sing 177 n n C4B NB HEM doub 178 n n CMB HMB HEM sing 179 n n CMB HMBA HEM sing 180 n n CMB HMBB HEM sing 181 n n CAB CBB HEM doub 182 n n CAB HAB HEM sing 183 n n CBB HBB HEM sing 184 n n CBB HBBA HEM sing 185 n n C1C C2C HEM sing 186 n y C1C NC HEM sing 187 n y C2C C3C HEM doub 188 n y C2C CMC HEM sing 189 n n C3C C4C HEM sing 190 n y C3C CAC HEM sing 191 n n C4C NC HEM sing 192 n y CMC HMC HEM sing 193 n n CMC HMCA HEM sing 194 n n CMC HMCB HEM sing 195 n n CAC CBC HEM doub 196 n n CAC HAC HEM sing 197 n n CBC HBC HEM sing 198 n n CBC HBCA HEM sing 199 n n C1D C2D HEM sing 200 n n C1D ND HEM doub 201 n n C2D C3D HEM doub 202 n n C2D CMD HEM sing 203 n n C3D C4D HEM sing 204 n n C3D CAD HEM sing 205 n n C4D ND HEM sing 206 n n CMD HMD HEM sing 207 n n CMD HMDA HEM sing 208 n n CMD HMDB HEM sing 209 n n CAD CBD HEM sing 210 n n CAD HAD HEM sing 211 n n CAD HADA HEM sing 212 n n CBD CGD HEM sing 213 n n CBD HBD HEM sing 214 n n CBD HBDA HEM sing 215 n n CGD O1D HEM doub 216 n n CGD O2D HEM sing 217 n n O2A H2A HEM sing 218 n n O2D H2D HEM sing 219 n n FE NA HEM sing 220 n n FE NB HEM sing 221 n n FE NC HEM sing 222 n n FE ND HEM sing 223 n n # _atom_sites.entry_id 4M4B _atom_sites.fract_transf_matrix[1][1] 0.018712 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018712 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005166 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 HEM A 1 201 1 HEM HEM . D 4 GOL A 1 202 1 GOL GOL . E 5 NOE A 1 203 2 NOE NOE . F 3 HEM B 1 201 1 HEM HEM . G 6 HOH A 1 301 1 HOH HOH . G 6 HOH A 2 302 3 HOH HOH . G 6 HOH A 3 303 4 HOH HOH . G 6 HOH A 4 304 5 HOH HOH . G 6 HOH A 5 305 8 HOH HOH . G 6 HOH A 6 306 9 HOH HOH . G 6 HOH A 7 307 10 HOH HOH . G 6 HOH A 8 308 12 HOH HOH . G 6 HOH A 9 309 13 HOH HOH . G 6 HOH A 10 310 14 HOH HOH . G 6 HOH A 11 311 15 HOH HOH . G 6 HOH A 12 312 16 HOH HOH . G 6 HOH A 13 313 18 HOH HOH . G 6 HOH A 14 314 19 HOH HOH . G 6 HOH A 15 315 20 HOH HOH . G 6 HOH A 16 316 21 HOH HOH . G 6 HOH A 17 317 25 HOH HOH . G 6 HOH A 18 318 26 HOH HOH . G 6 HOH A 19 319 27 HOH HOH . G 6 HOH A 20 320 28 HOH HOH . G 6 HOH A 21 321 29 HOH HOH . G 6 HOH A 22 322 31 HOH HOH . G 6 HOH A 23 323 32 HOH HOH . G 6 HOH A 24 324 34 HOH HOH . G 6 HOH A 25 325 35 HOH HOH . G 6 HOH A 26 326 39 HOH HOH . G 6 HOH A 27 327 43 HOH HOH . G 6 HOH A 28 328 44 HOH HOH . G 6 HOH A 29 329 45 HOH HOH . G 6 HOH A 30 330 47 HOH HOH . G 6 HOH A 31 331 49 HOH HOH . G 6 HOH A 32 332 53 HOH HOH . G 6 HOH A 33 333 54 HOH HOH . G 6 HOH A 34 334 55 HOH HOH . G 6 HOH A 35 335 57 HOH HOH . G 6 HOH A 36 336 59 HOH HOH . G 6 HOH A 37 337 60 HOH HOH . G 6 HOH A 38 338 61 HOH HOH . G 6 HOH A 39 339 62 HOH HOH . G 6 HOH A 40 340 63 HOH HOH . G 6 HOH A 41 341 65 HOH HOH . G 6 HOH A 42 342 67 HOH HOH . G 6 HOH A 43 343 68 HOH HOH . G 6 HOH A 44 344 69 HOH HOH . G 6 HOH A 45 345 70 HOH HOH . G 6 HOH A 46 346 72 HOH HOH . G 6 HOH A 47 347 74 HOH HOH . G 6 HOH A 48 348 76 HOH HOH . G 6 HOH A 49 349 78 HOH HOH . G 6 HOH A 50 350 79 HOH HOH . H 6 HOH B 1 301 2 HOH HOH . H 6 HOH B 2 302 6 HOH HOH . H 6 HOH B 3 303 7 HOH HOH . H 6 HOH B 4 304 11 HOH HOH . H 6 HOH B 5 305 17 HOH HOH . H 6 HOH B 6 306 22 HOH HOH . H 6 HOH B 7 307 23 HOH HOH . H 6 HOH B 8 308 24 HOH HOH . H 6 HOH B 9 309 30 HOH HOH . H 6 HOH B 10 310 33 HOH HOH . H 6 HOH B 11 311 36 HOH HOH . H 6 HOH B 12 312 37 HOH HOH . H 6 HOH B 13 313 38 HOH HOH . H 6 HOH B 14 314 40 HOH HOH . H 6 HOH B 15 315 46 HOH HOH . H 6 HOH B 16 316 48 HOH HOH . H 6 HOH B 17 317 50 HOH HOH . H 6 HOH B 18 318 51 HOH HOH . H 6 HOH B 19 319 52 HOH HOH . H 6 HOH B 20 320 58 HOH HOH . H 6 HOH B 21 321 64 HOH HOH . H 6 HOH B 22 322 66 HOH HOH . H 6 HOH B 23 323 71 HOH HOH . H 6 HOH B 24 324 73 HOH HOH . H 6 HOH B 25 325 75 HOH HOH . H 6 HOH B 26 326 77 HOH HOH . H 6 HOH B 27 327 80 HOH HOH . H 6 HOH B 28 328 83 HOH HOH . H 6 HOH B 29 329 84 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . C 3 0.938 16.054 -16.947 1 34.62 ? CHA HEM 201 A 1 HETATM 2 C CHB HEM . . . C 3 5.245 13.906 -16.083 1 35.67 ? CHB HEM 201 A 1 HETATM 3 C CHC HEM . . . C 3 3.025 10.832 -12.992 1 32.39 ? CHC HEM 201 A 1 HETATM 4 C CHD HEM . . . C 3 -1.326 12.512 -14.394 1 35.69 ? CHD HEM 201 A 1 HETATM 5 C C1A HEM . . . C 3 2.293 15.775 -16.988 1 39.32 ? C1A HEM 201 A 1 HETATM 6 C C2A HEM . . . C 3 3.331 16.478 -17.728 1 43.23 ? C2A HEM 201 A 1 HETATM 7 C C3A HEM . . . C 3 4.501 15.868 -17.478 1 43.92 ? C3A HEM 201 A 1 HETATM 8 C C4A HEM . . . C 3 4.275 14.753 -16.582 1 36.29 ? C4A HEM 201 A 1 HETATM 9 C CMA HEM . . . C 3 5.871 16.277 -18.061 1 38.81 ? CMA HEM 201 A 1 HETATM 10 C CAA HEM . . . C 3 3.266 17.712 -18.669 1 38.55 ? CAA HEM 201 A 1 HETATM 11 C CBA HEM . . . C 3 1.968 18.472 -18.844 1 48.91 ? CBA HEM 201 A 1 HETATM 12 C CGA HEM . . . C 3 2.309 19.513 -19.881 1 67.71 ? CGA HEM 201 A 1 HETATM 13 O O1A HEM . . . C 3 3.256 20.297 -19.606 1 63.29 ? O1A HEM 201 A 1 HETATM 14 O O2A HEM . . . C 3 1.659 19.551 -20.965 1 64.13 ? O2A HEM 201 A 1 HETATM 15 C C1B HEM . . . C 3 5.034 12.9 -15.15 1 35.07 ? C1B HEM 201 A 1 HETATM 16 C C2B HEM . . . C 3 6.044 12.007 -14.612 1 36.69 ? C2B HEM 201 A 1 HETATM 17 C C3B HEM . . . C 3 5.45 11.155 -13.747 1 32.06 ? C3B HEM 201 A 1 HETATM 18 C C4B HEM . . . C 3 4.011 11.467 -13.74 1 33.11 ? C4B HEM 201 A 1 HETATM 19 C CMB HEM . . . C 3 7.542 12.104 -14.98 1 32.68 ? CMB HEM 201 A 1 HETATM 20 C CAB HEM . . . C 3 6.082 9.999 -12.917 1 31.95 ? CAB HEM 201 A 1 HETATM 21 C CBB HEM . . . C 3 7.304 9.467 -13.123 1 36.68 ? CBB HEM 201 A 1 HETATM 22 C C1C HEM . . . C 3 1.651 10.974 -13.143 1 35.99 ? C1C HEM 201 A 1 HETATM 23 C C2C HEM . . . C 3 0.613 10.106 -12.598 1 36.19 ? C2C HEM 201 A 1 HETATM 24 C C3C HEM . . . C 3 -0.579 10.589 -12.983 1 36.12 ? C3C HEM 201 A 1 HETATM 25 C C4C HEM . . . C 3 -0.345 11.751 -13.809 1 36.07 ? C4C HEM 201 A 1 HETATM 26 C CMC HEM . . . C 3 0.864 8.876 -11.701 1 35.82 ? CMC HEM 201 A 1 HETATM 27 C CAC HEM . . . C 3 -1.998 10.044 -12.704 1 32.87 ? CAC HEM 201 A 1 HETATM 28 C CBC HEM . . . C 3 -2.294 8.735 -12.785 1 32.31 ? CBC HEM 201 A 1 HETATM 29 C C1D HEM . . . C 3 -1.138 13.624 -15.174 1 36.03 ? C1D HEM 201 A 1 HETATM 30 C C2D HEM . . . C 3 -2.198 14.448 -15.705 1 35.08 ? C2D HEM 201 A 1 HETATM 31 C C3D HEM . . . C 3 -1.49 15.552 -16.489 1 38.56 ? C3D HEM 201 A 1 HETATM 32 C C4D HEM . . . C 3 -0.066 15.29 -16.376 1 35.86 ? C4D HEM 201 A 1 HETATM 33 C CMD HEM . . . C 3 -3.717 14.27 -15.512 1 35.85 ? CMD HEM 201 A 1 HETATM 34 C CAD HEM . . . C 3 -2.184 16.684 -17.264 1 36.5 ? CAD HEM 201 A 1 HETATM 35 C CBD HEM . . . C 3 -2.86 16.013 -18.453 1 41.95 ? CBD HEM 201 A 1 HETATM 36 C CGD HEM . . . C 3 -3.527 17.059 -19.301 1 52.31 ? CGD HEM 201 A 1 HETATM 37 O O1D HEM . . . C 3 -2.863 17.563 -20.24 1 43.56 ? O1D HEM 201 A 1 HETATM 38 O O2D HEM . . . C 3 -4.715 17.376 -19.036 1 52.18 ? O2D HEM 201 A 1 HETATM 39 N NA HEM . . . C 3 2.915 14.73 -16.302 1 33.07 ? NA HEM 201 A 1 HETATM 40 N NB HEM . . . C 3 3.808 12.541 -14.6 1 33.2 ? NB HEM 201 A 1 HETATM 41 N NC HEM . . . C 3 1.015 11.962 -13.885 1 35.72 ? NC HEM 201 A 1 HETATM 42 N ND HEM . . . C 3 0.084 14.149 -15.594 1 35.48 ? ND HEM 201 A 1 HETATM 43 FE FE HEM . . . C 3 1.911 13.373 -15.15 1 38.81 ? FE HEM 201 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 334 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 43 #