data_4M4B # _model_server_result.job_id bFB0l4FbGRzcA5k2MqyZsg _model_server_result.datetime_utc '2024-11-16 09:41:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4m4b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":202}' # _entry.id 4M4B # _exptl.entry_id 4M4B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4M4B _cell.length_a 53.443 _cell.length_b 53.443 _cell.length_c 193.581 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4M4B _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 87 A HIS 87 1_555 C FE HEM . A HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc2 C FE HEM . A HEM 201 1_555 E N NOE . A NOE 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? metalc ? metalc3 C FE HEM . A HEM 201 1_555 E O1 NOE . A NOE 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.602 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 4M4B _atom_sites.fract_transf_matrix[1][1] 0.018712 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018712 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005166 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 HEM A 1 201 1 HEM HEM . D 4 GOL A 1 202 1 GOL GOL . E 5 NOE A 1 203 2 NOE NOE . F 3 HEM B 1 201 1 HEM HEM . G 6 HOH A 1 301 1 HOH HOH . G 6 HOH A 2 302 3 HOH HOH . G 6 HOH A 3 303 4 HOH HOH . G 6 HOH A 4 304 5 HOH HOH . G 6 HOH A 5 305 8 HOH HOH . G 6 HOH A 6 306 9 HOH HOH . G 6 HOH A 7 307 10 HOH HOH . G 6 HOH A 8 308 12 HOH HOH . G 6 HOH A 9 309 13 HOH HOH . G 6 HOH A 10 310 14 HOH HOH . G 6 HOH A 11 311 15 HOH HOH . G 6 HOH A 12 312 16 HOH HOH . G 6 HOH A 13 313 18 HOH HOH . G 6 HOH A 14 314 19 HOH HOH . G 6 HOH A 15 315 20 HOH HOH . G 6 HOH A 16 316 21 HOH HOH . G 6 HOH A 17 317 25 HOH HOH . G 6 HOH A 18 318 26 HOH HOH . G 6 HOH A 19 319 27 HOH HOH . G 6 HOH A 20 320 28 HOH HOH . G 6 HOH A 21 321 29 HOH HOH . G 6 HOH A 22 322 31 HOH HOH . G 6 HOH A 23 323 32 HOH HOH . G 6 HOH A 24 324 34 HOH HOH . G 6 HOH A 25 325 35 HOH HOH . G 6 HOH A 26 326 39 HOH HOH . G 6 HOH A 27 327 43 HOH HOH . G 6 HOH A 28 328 44 HOH HOH . G 6 HOH A 29 329 45 HOH HOH . G 6 HOH A 30 330 47 HOH HOH . G 6 HOH A 31 331 49 HOH HOH . G 6 HOH A 32 332 53 HOH HOH . G 6 HOH A 33 333 54 HOH HOH . G 6 HOH A 34 334 55 HOH HOH . G 6 HOH A 35 335 57 HOH HOH . G 6 HOH A 36 336 59 HOH HOH . G 6 HOH A 37 337 60 HOH HOH . G 6 HOH A 38 338 61 HOH HOH . G 6 HOH A 39 339 62 HOH HOH . G 6 HOH A 40 340 63 HOH HOH . G 6 HOH A 41 341 65 HOH HOH . G 6 HOH A 42 342 67 HOH HOH . G 6 HOH A 43 343 68 HOH HOH . G 6 HOH A 44 344 69 HOH HOH . G 6 HOH A 45 345 70 HOH HOH . G 6 HOH A 46 346 72 HOH HOH . G 6 HOH A 47 347 74 HOH HOH . G 6 HOH A 48 348 76 HOH HOH . G 6 HOH A 49 349 78 HOH HOH . G 6 HOH A 50 350 79 HOH HOH . H 6 HOH B 1 301 2 HOH HOH . H 6 HOH B 2 302 6 HOH HOH . H 6 HOH B 3 303 7 HOH HOH . H 6 HOH B 4 304 11 HOH HOH . H 6 HOH B 5 305 17 HOH HOH . H 6 HOH B 6 306 22 HOH HOH . H 6 HOH B 7 307 23 HOH HOH . H 6 HOH B 8 308 24 HOH HOH . H 6 HOH B 9 309 30 HOH HOH . H 6 HOH B 10 310 33 HOH HOH . H 6 HOH B 11 311 36 HOH HOH . H 6 HOH B 12 312 37 HOH HOH . H 6 HOH B 13 313 38 HOH HOH . H 6 HOH B 14 314 40 HOH HOH . H 6 HOH B 15 315 46 HOH HOH . H 6 HOH B 16 316 48 HOH HOH . H 6 HOH B 17 317 50 HOH HOH . H 6 HOH B 18 318 51 HOH HOH . H 6 HOH B 19 319 52 HOH HOH . H 6 HOH B 20 320 58 HOH HOH . H 6 HOH B 21 321 64 HOH HOH . H 6 HOH B 22 322 66 HOH HOH . H 6 HOH B 23 323 71 HOH HOH . H 6 HOH B 24 324 73 HOH HOH . H 6 HOH B 25 325 75 HOH HOH . H 6 HOH B 26 326 77 HOH HOH . H 6 HOH B 27 327 80 HOH HOH . H 6 HOH B 28 328 83 HOH HOH . H 6 HOH B 29 329 84 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 4 9.816 3.099 -7.892 1 36.23 ? C1 GOL 202 A 1 HETATM 2 O O1 GOL . . . D 4 10.123 2.235 -8.972 1 38.39 ? O1 GOL 202 A 1 HETATM 3 C C2 GOL . . . D 4 8.328 3.215 -7.487 1 30.99 ? C2 GOL 202 A 1 HETATM 4 O O2 GOL . . . D 4 8.245 2.892 -6.11 1 67.55 ? O2 GOL 202 A 1 HETATM 5 C C3 GOL . . . D 4 8.04 4.708 -7.65 1 36.71 ? C3 GOL 202 A 1 HETATM 6 O O3 GOL . . . D 4 6.812 5.204 -7.143 1 40.83 ? O3 GOL 202 A 1 # _model_server_stats.io_time_ms 71 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #