data_4M4D # _model_server_result.job_id C75gWTn9XRzLfByroND6qg _model_server_result.datetime_utc '2025-03-01 04:11:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4m4d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":501}' # _entry.id 4M4D # _exptl.entry_id 4M4D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 790.145 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.63 _cell.angle_gamma 90 _cell.entry_id 4M4D _cell.length_a 77.282 _cell.length_b 59.906 _cell.length_c 119.932 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4M4D _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H 1 1 B,I,J,K,L,M,N 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 H N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 138 A CYS 159 1_555 A SG CYS 177 A CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? disulf ? disulf2 B SG CYS 138 B CYS 159 1_555 B SG CYS 177 B CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? # _chem_comp.formula 'C44 H88 N O8 P' _chem_comp.formula_weight 790.145 _chem_comp.id PC1 _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 3-SN-PHOSPHATIDYLCHOLINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O12 P PC1 sing 265 n n P O14 PC1 doub 266 n n P O13 PC1 sing 267 n n P O11 PC1 sing 268 n n O13 C11 PC1 sing 269 n n C11 C12 PC1 sing 270 n n C11 H111 PC1 sing 271 n n C11 H112 PC1 sing 272 n n C12 N PC1 sing 273 n n C12 H121 PC1 sing 274 n n C12 H122 PC1 sing 275 n n N C13 PC1 sing 276 n n N C14 PC1 sing 277 n n N C15 PC1 sing 278 n n C13 H131 PC1 sing 279 n n C13 H132 PC1 sing 280 n n C13 H133 PC1 sing 281 n n C14 H141 PC1 sing 282 n n C14 H142 PC1 sing 283 n n C14 H143 PC1 sing 284 n n C15 H151 PC1 sing 285 n n C15 H152 PC1 sing 286 n n C15 H153 PC1 sing 287 n n O11 C1 PC1 sing 288 n n C1 C2 PC1 sing 289 n n C1 H11 PC1 sing 290 n n C1 H12 PC1 sing 291 n n C2 O21 PC1 sing 292 n n C2 C3 PC1 sing 293 n n C2 H2 PC1 sing 294 n n O21 C21 PC1 sing 295 n n C21 O22 PC1 doub 296 n n C21 C22 PC1 sing 297 n n C22 C23 PC1 sing 298 n n C22 H221 PC1 sing 299 n n C22 H222 PC1 sing 300 n n C23 C24 PC1 sing 301 n n C23 H231 PC1 sing 302 n n C23 H232 PC1 sing 303 n n C24 C25 PC1 sing 304 n n C24 H241 PC1 sing 305 n n C24 H242 PC1 sing 306 n n C25 C26 PC1 sing 307 n n C25 H251 PC1 sing 308 n n C25 H252 PC1 sing 309 n n C26 C27 PC1 sing 310 n n C26 H261 PC1 sing 311 n n C26 H262 PC1 sing 312 n n C27 C28 PC1 sing 313 n n C27 H271 PC1 sing 314 n n C27 H272 PC1 sing 315 n n C28 C29 PC1 sing 316 n n C28 H281 PC1 sing 317 n n C28 H282 PC1 sing 318 n n C29 C2A PC1 sing 319 n n C29 H291 PC1 sing 320 n n C29 H292 PC1 sing 321 n n C2A C2B PC1 sing 322 n n C2A H2A1 PC1 sing 323 n n C2A H2A2 PC1 sing 324 n n C2B C2C PC1 sing 325 n n C2B H2B1 PC1 sing 326 n n C2B H2B2 PC1 sing 327 n n C2C C2D PC1 sing 328 n n C2C H2C1 PC1 sing 329 n n C2C H2C2 PC1 sing 330 n n C2D C2E PC1 sing 331 n n C2D H2D1 PC1 sing 332 n n C2D H2D2 PC1 sing 333 n n C2E C2F PC1 sing 334 n n C2E H2E1 PC1 sing 335 n n C2E H2E2 PC1 sing 336 n n C2F C2G PC1 sing 337 n n C2F H2F1 PC1 sing 338 n n C2F H2F2 PC1 sing 339 n n C2G C2H PC1 sing 340 n n C2G H2G1 PC1 sing 341 n n C2G H2G2 PC1 sing 342 n n C2H C2I PC1 sing 343 n n C2H H2H1 PC1 sing 344 n n C2H H2H2 PC1 sing 345 n n C2I H2I1 PC1 sing 346 n n C2I H2I2 PC1 sing 347 n n C2I H2I3 PC1 sing 348 n n C3 O31 PC1 sing 349 n n C3 H31 PC1 sing 350 n n C3 H32 PC1 sing 351 n n O31 C31 PC1 sing 352 n n C31 O32 PC1 doub 353 n n C31 C32 PC1 sing 354 n n C32 C33 PC1 sing 355 n n C32 H321 PC1 sing 356 n n C32 H322 PC1 sing 357 n n C33 C34 PC1 sing 358 n n C33 H331 PC1 sing 359 n n C33 H332 PC1 sing 360 n n C34 C35 PC1 sing 361 n n C34 H341 PC1 sing 362 n n C34 H342 PC1 sing 363 n n C35 C36 PC1 sing 364 n n C35 H351 PC1 sing 365 n n C35 H352 PC1 sing 366 n n C36 C37 PC1 sing 367 n n C36 H361 PC1 sing 368 n n C36 H362 PC1 sing 369 n n C37 C38 PC1 sing 370 n n C37 H371 PC1 sing 371 n n C37 H372 PC1 sing 372 n n C38 C39 PC1 sing 373 n n C38 H381 PC1 sing 374 n n C38 H382 PC1 sing 375 n n C39 C3A PC1 sing 376 n n C39 H391 PC1 sing 377 n n C39 H392 PC1 sing 378 n n C3A C3B PC1 sing 379 n n C3A H3A1 PC1 sing 380 n n C3A H3A2 PC1 sing 381 n n C3B C3C PC1 sing 382 n n C3B H3B1 PC1 sing 383 n n C3B H3B2 PC1 sing 384 n n C3C C3D PC1 sing 385 n n C3C H3C1 PC1 sing 386 n n C3C H3C2 PC1 sing 387 n n C3D C3E PC1 sing 388 n n C3D H3D1 PC1 sing 389 n n C3D H3D2 PC1 sing 390 n n C3E C3F PC1 sing 391 n n C3E H3E1 PC1 sing 392 n n C3E H3E2 PC1 sing 393 n n C3F C3G PC1 sing 394 n n C3F H3F1 PC1 sing 395 n n C3F H3F2 PC1 sing 396 n n C3G C3H PC1 sing 397 n n C3G H3G1 PC1 sing 398 n n C3G H3G2 PC1 sing 399 n n C3H C3I PC1 sing 400 n n C3H H3H1 PC1 sing 401 n n C3H H3H2 PC1 sing 402 n n C3I H3I1 PC1 sing 403 n n C3I H3I2 PC1 sing 404 n n C3I H3I3 PC1 sing 405 n n # _atom_sites.entry_id 4M4D _atom_sites.fract_transf_matrix[1][1] 0.01294 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002899 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016693 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008545 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAG A 1 501 1411 NAG NAG . D 2 NAG A 1 502 1412 NAG NAG . E 2 NAG A 1 503 1421 NAG NAG . F 2 NAG A 1 504 1431 NAG NAG . G 2 NAG A 1 505 1432 NAG NAG . H 3 PC1 A 1 506 501 PC1 PC1 . I 3 PC1 B 1 501 501 PC1 PC1 . J 2 NAG B 1 502 1411 NAG NAG . K 2 NAG B 1 503 1412 NAG NAG . L 2 NAG B 1 504 1421 NAG NAG . M 2 NAG B 1 505 1431 NAG NAG . N 2 NAG B 1 506 1432 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O12 PC1 . . . I 3 -23.523 -4.14 97.317 1 108.34 ? O12 PC1 501 B 1 HETATM 2 P P PC1 . . . I 3 -24.987 -4.337 97.375 1 108.59 ? P PC1 501 B 1 HETATM 3 O O14 PC1 . . . I 3 -25.862 -3.351 96.698 1 108.42 ? O14 PC1 501 B 1 HETATM 4 O O13 PC1 . . . I 3 -25.445 -4.469 98.914 1 110.11 ? O13 PC1 501 B 1 HETATM 5 C C11 PC1 . . . I 3 -24.63 -5.179 99.851 1 112.58 ? C11 PC1 501 B 1 HETATM 6 C C12 PC1 . . . I 3 -25.243 -5.126 101.253 1 114 ? C12 PC1 501 B 1 HETATM 7 N N PC1 . . . I 3 -25.162 -3.775 101.826 1 115.23 ? N PC1 501 B 1 HETATM 8 C C13 PC1 . . . I 3 -25.669 -3.812 103.203 1 115.19 ? C13 PC1 501 B 1 HETATM 9 C C14 PC1 . . . I 3 -23.758 -3.321 101.848 1 115.56 ? C14 PC1 501 B 1 HETATM 10 C C15 PC1 . . . I 3 -25.964 -2.831 101.039 1 115.21 ? C15 PC1 501 B 1 HETATM 11 O O11 PC1 . . . I 3 -25.301 -5.79 96.758 1 102.85 ? O11 PC1 501 B 1 HETATM 12 C C1 PC1 . . . I 3 -24.424 -6.878 97.059 1 95.05 ? C1 PC1 501 B 1 HETATM 13 C C2 PC1 . . . I 3 -24.926 -8.185 96.441 1 90.39 ? C2 PC1 501 B 1 HETATM 14 O O21 PC1 . . . I 3 -24.804 -8.168 95.012 1 89.81 ? O21 PC1 501 B 1 HETATM 15 C C21 PC1 . . . I 3 -23.534 -8.51 94.658 1 88.32 ? C21 PC1 501 B 1 HETATM 16 O O22 PC1 . . . I 3 -22.698 -8.725 95.525 1 90.79 ? O22 PC1 501 B 1 HETATM 17 C C22 PC1 . . . I 3 -23.164 -8.648 93.177 1 85.92 ? C22 PC1 501 B 1 HETATM 18 C C23 PC1 . . . I 3 -21.836 -9.397 93.063 1 84.1 ? C23 PC1 501 B 1 HETATM 19 C C24 PC1 . . . I 3 -21.692 -10.077 91.7 1 82.47 ? C24 PC1 501 B 1 HETATM 20 C C25 PC1 . . . I 3 -22.871 -11.023 91.465 1 80.21 ? C25 PC1 501 B 1 HETATM 21 C C26 PC1 . . . I 3 -22.596 -11.96 90.287 1 77.48 ? C26 PC1 501 B 1 HETATM 22 C C27 PC1 . . . I 3 -23.845 -12.77 89.94 1 75.39 ? C27 PC1 501 B 1 HETATM 23 C C28 PC1 . . . I 3 -24.449 -13.437 91.177 1 72.32 ? C28 PC1 501 B 1 HETATM 24 C C29 PC1 . . . I 3 -25.709 -14.209 90.781 1 70.11 ? C29 PC1 501 B 1 HETATM 25 C C2A PC1 . . . I 3 -26.495 -14.684 92.002 1 68.77 ? C2A PC1 501 B 1 HETATM 26 C C2B PC1 . . . I 3 -25.684 -15.637 92.883 1 66.72 ? C2B PC1 501 B 1 HETATM 27 C C2C PC1 . . . I 3 -26.595 -16.238 93.952 1 67.84 ? C2C PC1 501 B 1 HETATM 28 C C2D PC1 . . . I 3 -25.843 -17.227 94.844 1 69.74 ? C2D PC1 501 B 1 HETATM 29 C C2E PC1 . . . I 3 -26.793 -17.858 95.865 1 72.36 ? C2E PC1 501 B 1 HETATM 30 C C2F PC1 . . . I 3 -26.025 -18.748 96.841 1 74.28 ? C2F PC1 501 B 1 HETATM 31 C C2G PC1 . . . I 3 -26.942 -19.277 97.948 1 75.24 ? C2G PC1 501 B 1 HETATM 32 C C2H PC1 . . . I 3 -26.14 -20.046 98.996 1 78.19 ? C2H PC1 501 B 1 HETATM 33 C C2I PC1 . . . I 3 -25.121 -19.143 99.7 1 75.97 ? C2I PC1 501 B 1 HETATM 34 C C3 PC1 . . . I 3 -26.392 -8.373 96.796 1 87.49 ? C3 PC1 501 B 1 HETATM 35 O O31 PC1 . . . I 3 -26.822 -9.64 96.285 1 82.77 ? O31 PC1 501 B 1 HETATM 36 C C31 PC1 . . . I 3 -27.377 -9.513 95.041 1 80.84 ? C31 PC1 501 B 1 HETATM 37 O O32 PC1 . . . I 3 -27.497 -8.393 94.542 1 82.26 ? O32 PC1 501 B 1 HETATM 38 C C32 PC1 . . . I 3 -27.867 -10.757 94.318 1 79.3 ? C32 PC1 501 B 1 HETATM 39 C C33 PC1 . . . I 3 -27.997 -11.915 95.315 1 77.5 ? C33 PC1 501 B 1 HETATM 40 C C34 PC1 . . . I 3 -29.042 -11.569 96.372 1 76.86 ? C34 PC1 501 B 1 HETATM 41 C C35 PC1 . . . I 3 -30.455 -11.773 95.819 1 76.16 ? C35 PC1 501 B 1 HETATM 42 C C36 PC1 . . . I 3 -30.76 -13.268 95.727 1 77.03 ? C36 PC1 501 B 1 HETATM 43 C C37 PC1 . . . I 3 -30.705 -13.896 97.122 1 74.75 ? C37 PC1 501 B 1 HETATM 44 C C38 PC1 . . . I 3 -30.993 -15.396 97.083 1 75.32 ? C38 PC1 501 B 1 HETATM 45 C C39 PC1 . . . I 3 -32.351 -15.7 96.444 1 75.02 ? C39 PC1 501 B 1 HETATM 46 C C3A PC1 . . . I 3 -32.741 -17.159 96.681 1 76.61 ? C3A PC1 501 B 1 HETATM 47 C C3B PC1 . . . I 3 -33.215 -17.394 98.12 1 76.14 ? C3B PC1 501 B 1 HETATM 48 C C3C PC1 . . . I 3 -32.195 -16.922 99.156 1 74.97 ? C3C PC1 501 B 1 HETATM 49 C C3D PC1 . . . I 3 -32.743 -17.096 100.574 1 76.06 ? C3D PC1 501 B 1 HETATM 50 C C3E PC1 . . . I 3 -32.787 -18.575 100.969 1 76.38 ? C3E PC1 501 B 1 HETATM 51 C C3F PC1 . . . I 3 -31.651 -18.922 101.929 1 75.83 ? C3F PC1 501 B 1 HETATM 52 C C3G PC1 . . . I 3 -30.277 -18.54 101.367 1 75.15 ? C3G PC1 501 B 1 HETATM 53 C C3H PC1 . . . I 3 -29.184 -18.865 102.383 1 75.84 ? C3H PC1 501 B 1 HETATM 54 C C3I PC1 . . . I 3 -27.797 -18.491 101.851 1 76.8 ? C3I PC1 501 B 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 500 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 54 #