data_4M55
#
_model_server_result.job_id            Q3If2woyLi1DpB89w3ZwzQ 
_model_server_result.datetime_utc      '2024-10-13 19:22:35' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4m55 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":501}' 
#
_entry.id    4M55 
#
_exptl.entry_id    4M55 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              663.425 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4M55 
_cell.length_a            83.171 
_cell.length_b            85.145 
_cell.length_c            292.549 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4M55 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 G N N 
? 2 J N N 
? 2 M N N 
? 2 P N N 
? 2 R N N 
? 2 S N N 
#
_chem_comp.formula           'C21 H27 N7 O14 P2' 
_chem_comp.formula_weight    663.425 
_chem_comp.id                NAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAD doub 235 n n 
PA O2A NAD sing 236 n n 
PA O5B NAD sing 237 n n 
PA O3 NAD sing 238 n n 
O2A HOA2 NAD sing 239 n n 
O5B C5B NAD sing 240 n n 
C5B C4B NAD sing 241 n n 
C5B H51A NAD sing 242 n n 
C5B H52A NAD sing 243 n n 
C4B O4B NAD sing 244 n n 
C4B C3B NAD sing 245 n n 
C4B H4B NAD sing 246 n n 
O4B C1B NAD sing 247 n n 
C3B O3B NAD sing 248 n n 
C3B C2B NAD sing 249 n n 
C3B H3B NAD sing 250 n n 
O3B HO3A NAD sing 251 n n 
C2B O2B NAD sing 252 n n 
C2B C1B NAD sing 253 n n 
C2B H2B NAD sing 254 n n 
O2B HO2A NAD sing 255 n n 
C1B N9A NAD sing 256 n n 
C1B H1B NAD sing 257 n n 
N9A C8A NAD sing 258 n y 
N9A C4A NAD sing 259 n y 
C8A N7A NAD doub 260 n y 
C8A H8A NAD sing 261 n n 
N7A C5A NAD sing 262 n y 
C5A C6A NAD sing 263 n y 
C5A C4A NAD doub 264 n y 
C6A N6A NAD sing 265 n n 
C6A N1A NAD doub 266 n y 
N6A H61A NAD sing 267 n n 
N6A H62A NAD sing 268 n n 
N1A C2A NAD sing 269 n y 
C2A N3A NAD doub 270 n y 
C2A H2A NAD sing 271 n n 
N3A C4A NAD sing 272 n y 
O3 PN NAD sing 273 n n 
PN O1N NAD doub 274 n n 
PN O2N NAD sing 275 n n 
PN O5D NAD sing 276 n n 
O5D C5D NAD sing 277 n n 
C5D C4D NAD sing 278 n n 
C5D H51N NAD sing 279 n n 
C5D H52N NAD sing 280 n n 
C4D O4D NAD sing 281 n n 
C4D C3D NAD sing 282 n n 
C4D H4D NAD sing 283 n n 
O4D C1D NAD sing 284 n n 
C3D O3D NAD sing 285 n n 
C3D C2D NAD sing 286 n n 
C3D H3D NAD sing 287 n n 
O3D HO3N NAD sing 288 n n 
C2D O2D NAD sing 289 n n 
C2D C1D NAD sing 290 n n 
C2D H2D NAD sing 291 n n 
O2D HO2N NAD sing 292 n n 
C1D N1N NAD sing 293 n n 
C1D H1D NAD sing 294 n n 
N1N C2N NAD sing 295 n y 
N1N C6N NAD doub 296 n y 
C2N C3N NAD doub 297 n y 
C2N H2N NAD sing 298 n n 
C3N C7N NAD sing 299 n n 
C3N C4N NAD sing 300 n y 
C7N O7N NAD doub 301 n n 
C7N N7N NAD sing 302 n n 
N7N H71N NAD sing 303 n n 
N7N H72N NAD sing 304 n n 
C4N C5N NAD doub 305 n y 
C4N H4N NAD sing 306 n n 
C5N C6N NAD sing 307 n y 
C5N H5N NAD sing 308 n n 
C6N H6N NAD sing 309 n n 
#
_atom_sites.entry_id                     4M55 
_atom_sites.fract_transf_matrix[1][1]    0.012023 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011745 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003418 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 NAD A 1 501 800 NAD NAD . 
H 3 POP A 1 502 503 POP POP . 
I 4 SO4 A 1 503 1 SO4 SO4 . 
J 2 NAD B 1 501 800 NAD NAD . 
K 5 UDP B 1 502 901 UDP UDP . 
L 4 SO4 B 1 503 2 SO4 SO4 . 
M 2 NAD C 1 501 800 NAD NAD . 
N 3 POP C 1 502 503 POP POP . 
O 4 SO4 C 1 503 3 SO4 SO4 . 
P 2 NAD D 1 501 800 NAD NAD . 
Q 5 UDP D 1 502 901 UDP UDP . 
R 2 NAD E 1 800 800 NAD NAD . 
S 2 NAD F 1 800 800 NAD NAD . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAD . . . J 2 -8.674 44.972 345.732 1 69.34 ? PA NAD 501 B 1 
HETATM 2 O O1A NAD . . . J 2 -8.308 45.589 347.037 1 67.62 ? O1A NAD 501 B 1 
HETATM 3 O O2A NAD . . . J 2 -8.159 45.607 344.464 1 91.13 ? O2A NAD 501 B 1 
HETATM 4 O O5B NAD . . . J 2 -8.265 43.43 345.815 1 44.4 ? O5B NAD 501 B 1 
HETATM 5 C C5B NAD . . . J 2 -8.507 42.458 344.79 1 44.48 ? C5B NAD 501 B 1 
HETATM 6 C C4B NAD . . . J 2 -7.617 41.284 345.201 1 65.87 ? C4B NAD 501 B 1 
HETATM 7 O O4B NAD . . . J 2 -7.494 40.202 344.254 1 73.31 ? O4B NAD 501 B 1 
HETATM 8 C C3B NAD . . . J 2 -6.213 41.813 345.398 1 76.62 ? C3B NAD 501 B 1 
HETATM 9 O O3B NAD . . . J 2 -5.754 41.225 346.616 1 85.28 ? O3B NAD 501 B 1 
HETATM 10 C C2B NAD . . . J 2 -5.459 41.301 344.176 1 72.39 ? C2B NAD 501 B 1 
HETATM 11 O O2B NAD . . . J 2 -4.053 41.298 344.449 1 77.58 ? O2B NAD 501 B 1 
HETATM 12 C C1B NAD . . . J 2 -6.118 39.936 343.927 1 62.98 ? C1B NAD 501 B 1 
HETATM 13 N N9A NAD . . . J 2 -6.036 39.516 342.509 1 56.56 ? N9A NAD 501 B 1 
HETATM 14 C C8A NAD . . . J 2 -6.165 40.366 341.444 1 55 ? C8A NAD 501 B 1 
HETATM 15 N N7A NAD . . . J 2 -6.035 39.707 340.25 1 47.71 ? N7A NAD 501 B 1 
HETATM 16 C C5A NAD . . . J 2 -5.813 38.41 340.531 1 43.65 ? C5A NAD 501 B 1 
HETATM 17 C C6A NAD . . . J 2 -5.597 37.205 339.713 1 51.82 ? C6A NAD 501 B 1 
HETATM 18 N N6A NAD . . . J 2 -5.62 37.339 338.372 1 62.53 ? N6A NAD 501 B 1 
HETATM 19 N N1A NAD . . . J 2 -5.398 36.012 340.315 1 52.13 ? N1A NAD 501 B 1 
HETATM 20 C C2A NAD . . . J 2 -5.412 35.97 341.678 1 60.83 ? C2A NAD 501 B 1 
HETATM 21 N N3A NAD . . . J 2 -5.611 37.033 342.514 1 51.08 ? N3A NAD 501 B 1 
HETATM 22 C C4A NAD . . . J 2 -5.816 38.275 342.012 1 47.16 ? C4A NAD 501 B 1 
HETATM 23 O O3 NAD . . . J 2 -10.247 44.877 345.479 1 276.49 ? O3 NAD 501 B 1 
HETATM 24 P PN NAD . . . J 2 -11.34 45.082 346.614 1 68.49 ? PN NAD 501 B 1 
HETATM 25 O O1N NAD . . . J 2 -11.039 44.089 347.765 1 69.66 ? O1N NAD 501 B 1 
HETATM 26 O O2N NAD . . . J 2 -11.547 46.579 346.778 1 58.19 ? O2N NAD 501 B 1 
HETATM 27 O O5D NAD . . . J 2 -12.545 44.471 345.753 1 87.59 ? O5D NAD 501 B 1 
HETATM 28 C C5D NAD . . . J 2 -12.914 43.106 345.925 1 87.96 ? C5D NAD 501 B 1 
HETATM 29 C C4D NAD . . . J 2 -14.116 42.906 345.046 1 81.48 ? C4D NAD 501 B 1 
HETATM 30 O O4D NAD . . . J 2 -15.129 43.838 345.427 1 77.25 ? O4D NAD 501 B 1 
HETATM 31 C C3D NAD . . . J 2 -13.64 43.293 343.659 1 83.02 ? C3D NAD 501 B 1 
HETATM 32 O O3D NAD . . . J 2 -13.824 42.226 342.728 1 84.6 ? O3D NAD 501 B 1 
HETATM 33 C C2D NAD . . . J 2 -14.499 44.466 343.26 1 79.86 ? C2D NAD 501 B 1 
HETATM 34 O O2D NAD . . . J 2 -14.964 44.271 341.938 1 81.71 ? O2D NAD 501 B 1 
HETATM 35 C C1D NAD . . . J 2 -15.648 44.452 344.248 1 79.28 ? C1D NAD 501 B 1 
HETATM 36 N N1N NAD . . . J 2 -16.039 45.835 344.467 1 76.11 ? N1N NAD 501 B 1 
HETATM 37 C C2N NAD . . . J 2 -15.427 46.537 345.415 1 70.31 ? C2N NAD 501 B 1 
HETATM 38 C C3N NAD . . . J 2 -15.787 47.858 345.626 1 72.12 ? C3N NAD 501 B 1 
HETATM 39 C C7N NAD . . . J 2 -15.081 48.624 346.685 1 77.08 ? C7N NAD 501 B 1 
HETATM 40 O O7N NAD . . . J 2 -15.369 49.789 346.88 1 83.41 ? O7N NAD 501 B 1 
HETATM 41 N N7N NAD . . . J 2 -14.116 47.995 347.346 1 77.16 ? N7N NAD 501 B 1 
HETATM 42 C C4N NAD . . . J 2 -16.755 48.468 344.854 1 75.45 ? C4N NAD 501 B 1 
HETATM 43 C C5N NAD . . . J 2 -17.373 47.708 343.871 1 80.39 ? C5N NAD 501 B 1 
HETATM 44 C C6N NAD . . . J 2 -16.988 46.381 343.693 1 78.9 ? C6N NAD 501 B 1 
#
_model_server_stats.io_time_ms              26 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    26 
_model_server_stats.query_time_ms           281 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           44 
#