data_4M55
#
_model_server_result.job_id            g2rayUSZRpvr41Iiij5iSQ 
_model_server_result.datetime_utc      '2024-10-13 19:17:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4m55 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":501}' 
#
_entry.id    4M55 
#
_exptl.entry_id    4M55 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              663.425 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4M55 
_cell.length_a            83.171 
_cell.length_b            85.145 
_cell.length_c            292.549 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4M55 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 G N N 
? 2 J N N 
? 2 M N N 
? 2 P N N 
? 2 R N N 
? 2 S N N 
#
_chem_comp.formula           'C21 H27 N7 O14 P2' 
_chem_comp.formula_weight    663.425 
_chem_comp.id                NAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAD doub 235 n n 
PA O2A NAD sing 236 n n 
PA O5B NAD sing 237 n n 
PA O3 NAD sing 238 n n 
O2A HOA2 NAD sing 239 n n 
O5B C5B NAD sing 240 n n 
C5B C4B NAD sing 241 n n 
C5B H51A NAD sing 242 n n 
C5B H52A NAD sing 243 n n 
C4B O4B NAD sing 244 n n 
C4B C3B NAD sing 245 n n 
C4B H4B NAD sing 246 n n 
O4B C1B NAD sing 247 n n 
C3B O3B NAD sing 248 n n 
C3B C2B NAD sing 249 n n 
C3B H3B NAD sing 250 n n 
O3B HO3A NAD sing 251 n n 
C2B O2B NAD sing 252 n n 
C2B C1B NAD sing 253 n n 
C2B H2B NAD sing 254 n n 
O2B HO2A NAD sing 255 n n 
C1B N9A NAD sing 256 n n 
C1B H1B NAD sing 257 n n 
N9A C8A NAD sing 258 n y 
N9A C4A NAD sing 259 n y 
C8A N7A NAD doub 260 n y 
C8A H8A NAD sing 261 n n 
N7A C5A NAD sing 262 n y 
C5A C6A NAD sing 263 n y 
C5A C4A NAD doub 264 n y 
C6A N6A NAD sing 265 n n 
C6A N1A NAD doub 266 n y 
N6A H61A NAD sing 267 n n 
N6A H62A NAD sing 268 n n 
N1A C2A NAD sing 269 n y 
C2A N3A NAD doub 270 n y 
C2A H2A NAD sing 271 n n 
N3A C4A NAD sing 272 n y 
O3 PN NAD sing 273 n n 
PN O1N NAD doub 274 n n 
PN O2N NAD sing 275 n n 
PN O5D NAD sing 276 n n 
O5D C5D NAD sing 277 n n 
C5D C4D NAD sing 278 n n 
C5D H51N NAD sing 279 n n 
C5D H52N NAD sing 280 n n 
C4D O4D NAD sing 281 n n 
C4D C3D NAD sing 282 n n 
C4D H4D NAD sing 283 n n 
O4D C1D NAD sing 284 n n 
C3D O3D NAD sing 285 n n 
C3D C2D NAD sing 286 n n 
C3D H3D NAD sing 287 n n 
O3D HO3N NAD sing 288 n n 
C2D O2D NAD sing 289 n n 
C2D C1D NAD sing 290 n n 
C2D H2D NAD sing 291 n n 
O2D HO2N NAD sing 292 n n 
C1D N1N NAD sing 293 n n 
C1D H1D NAD sing 294 n n 
N1N C2N NAD sing 295 n y 
N1N C6N NAD doub 296 n y 
C2N C3N NAD doub 297 n y 
C2N H2N NAD sing 298 n n 
C3N C7N NAD sing 299 n n 
C3N C4N NAD sing 300 n y 
C7N O7N NAD doub 301 n n 
C7N N7N NAD sing 302 n n 
N7N H71N NAD sing 303 n n 
N7N H72N NAD sing 304 n n 
C4N C5N NAD doub 305 n y 
C4N H4N NAD sing 306 n n 
C5N C6N NAD sing 307 n y 
C5N H5N NAD sing 308 n n 
C6N H6N NAD sing 309 n n 
#
_atom_sites.entry_id                     4M55 
_atom_sites.fract_transf_matrix[1][1]    0.012023 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011745 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003418 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 NAD A 1 501 800 NAD NAD . 
H 3 POP A 1 502 503 POP POP . 
I 4 SO4 A 1 503 1 SO4 SO4 . 
J 2 NAD B 1 501 800 NAD NAD . 
K 5 UDP B 1 502 901 UDP UDP . 
L 4 SO4 B 1 503 2 SO4 SO4 . 
M 2 NAD C 1 501 800 NAD NAD . 
N 3 POP C 1 502 503 POP POP . 
O 4 SO4 C 1 503 3 SO4 SO4 . 
P 2 NAD D 1 501 800 NAD NAD . 
Q 5 UDP D 1 502 901 UDP UDP . 
R 2 NAD E 1 800 800 NAD NAD . 
S 2 NAD F 1 800 800 NAD NAD . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAD . . . M 2 15.203 37.908 351.829 1 69.67 ? PA NAD 501 C 1 
HETATM 2 O O1A NAD . . . M 2 14.777 39.345 352.069 1 58.36 ? O1A NAD 501 C 1 
HETATM 3 O O2A NAD . . . M 2 14.425 36.745 352.397 1 72.65 ? O2A NAD 501 C 1 
HETATM 4 O O5B NAD . . . M 2 15.348 37.748 350.226 1 83.69 ? O5B NAD 501 C 1 
HETATM 5 C C5B NAD . . . M 2 14.885 36.595 349.537 1 73.04 ? C5B NAD 501 C 1 
HETATM 6 C C4B NAD . . . M 2 13.99 37.102 348.428 1 75.93 ? C4B NAD 501 C 1 
HETATM 7 O O4B NAD . . . M 2 13.746 36.069 347.469 1 81.46 ? O4B NAD 501 C 1 
HETATM 8 C C3B NAD . . . M 2 12.64 37.499 348.977 1 73.38 ? C3B NAD 501 C 1 
HETATM 9 O O3B NAD . . . M 2 12.239 38.729 348.357 1 70.37 ? O3B NAD 501 C 1 
HETATM 10 C C2B NAD . . . M 2 11.746 36.318 348.626 1 69.56 ? C2B NAD 501 C 1 
HETATM 11 O O2B NAD . . . M 2 10.387 36.715 348.495 1 79.98 ? O2B NAD 501 C 1 
HETATM 12 C C1B NAD . . . M 2 12.353 35.858 347.323 1 67.07 ? C1B NAD 501 C 1 
HETATM 13 N N9A NAD . . . M 2 12.145 34.426 347.083 1 60.28 ? N9A NAD 501 C 1 
HETATM 14 C C8A NAD . . . M 2 12.243 33.379 347.931 1 59.89 ? C8A NAD 501 C 1 
HETATM 15 N N7A NAD . . . M 2 11.957 32.205 347.275 1 59.33 ? N7A NAD 501 C 1 
HETATM 16 C C5A NAD . . . M 2 11.66 32.521 345.994 1 49.9 ? C5A NAD 501 C 1 
HETATM 17 C C6A NAD . . . M 2 11.265 31.823 344.766 1 55.58 ? C6A NAD 501 C 1 
HETATM 18 N N6A NAD . . . M 2 11.124 30.485 344.708 1 61.66 ? N6A NAD 501 C 1 
HETATM 19 N N1A NAD . . . M 2 11.072 32.548 343.652 1 67.92 ? N1A NAD 501 C 1 
HETATM 20 C C2A NAD . . . M 2 11.214 33.876 343.644 1 67.38 ? C2A NAD 501 C 1 
HETATM 21 N N3A NAD . . . M 2 11.56 34.592 344.718 1 60.86 ? N3A NAD 501 C 1 
HETATM 22 C C4A NAD . . . M 2 11.791 33.976 345.886 1 55.6 ? C4A NAD 501 C 1 
HETATM 23 O O3 NAD . . . M 2 16.692 37.674 352.363 1 183.17 ? O3 NAD 501 C 1 
HETATM 24 P PN NAD . . . M 2 17.939 38.589 351.96 1 68.73 ? PN NAD 501 C 1 
HETATM 25 O O1N NAD . . . M 2 17.543 39.706 350.995 1 76.82 ? O1N NAD 501 C 1 
HETATM 26 O O2N NAD . . . M 2 18.627 38.948 353.242 1 75.43 ? O2N NAD 501 C 1 
HETATM 27 O O5D NAD . . . M 2 18.747 37.476 351.134 1 89.02 ? O5D NAD 501 C 1 
HETATM 28 C C5D NAD . . . M 2 19.254 37.809 349.835 1 89.39 ? C5D NAD 501 C 1 
HETATM 29 C C4D NAD . . . M 2 20.303 36.79 349.446 1 85.69 ? C4D NAD 501 C 1 
HETATM 30 O O4D NAD . . . M 2 21.463 37.011 350.243 1 93.96 ? O4D NAD 501 C 1 
HETATM 31 C C3D NAD . . . M 2 19.805 35.41 349.804 1 86.62 ? C3D NAD 501 C 1 
HETATM 32 O O3D NAD . . . M 2 20.217 34.546 348.754 1 94.47 ? O3D NAD 501 C 1 
HETATM 33 C C2D NAD . . . M 2 20.583 34.976 351.015 1 88.48 ? C2D NAD 501 C 1 
HETATM 34 O O2D NAD . . . M 2 20.876 33.595 350.848 1 89.5 ? O2D NAD 501 C 1 
HETATM 35 C C1D NAD . . . M 2 21.845 35.818 350.932 1 92.29 ? C1D NAD 501 C 1 
HETATM 36 N N1N NAD . . . M 2 22.434 36.126 352.238 1 93.43 ? N1N NAD 501 C 1 
HETATM 37 C C2N NAD . . . M 2 22.039 37.198 352.946 1 89.29 ? C2N NAD 501 C 1 
HETATM 38 C C3N NAD . . . M 2 22.622 37.469 354.191 1 92.45 ? C3N NAD 501 C 1 
HETATM 39 C C7N NAD . . . M 2 22.202 38.645 355.019 1 89 ? C7N NAD 501 C 1 
HETATM 40 O O7N NAD . . . M 2 22.356 38.611 356.218 1 88.93 ? O7N NAD 501 C 1 
HETATM 41 N N7N NAD . . . M 2 21.648 39.701 354.451 1 92.5 ? N7N NAD 501 C 1 
HETATM 42 C C4N NAD . . . M 2 23.623 36.635 354.684 1 95.53 ? C4N NAD 501 C 1 
HETATM 43 C C5N NAD . . . M 2 24.015 35.538 353.924 1 97.06 ? C5N NAD 501 C 1 
HETATM 44 C C6N NAD . . . M 2 23.399 35.309 352.697 1 97.52 ? C6N NAD 501 C 1 
#
_model_server_stats.io_time_ms              27 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           282 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           44 
#