data_4M55 # _model_server_result.job_id gOIkhf0Cc_5QP00nytshGQ _model_server_result.datetime_utc '2024-10-13 19:17:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4m55 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":501}' # _entry.id 4M55 # _exptl.entry_id 4M55 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4M55 _cell.length_a 83.171 _cell.length_b 85.145 _cell.length_c 292.549 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4M55 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 J N N ? 2 M N N ? 2 P N N ? 2 R N N ? 2 S N N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 235 n n PA O2A NAD sing 236 n n PA O5B NAD sing 237 n n PA O3 NAD sing 238 n n O2A HOA2 NAD sing 239 n n O5B C5B NAD sing 240 n n C5B C4B NAD sing 241 n n C5B H51A NAD sing 242 n n C5B H52A NAD sing 243 n n C4B O4B NAD sing 244 n n C4B C3B NAD sing 245 n n C4B H4B NAD sing 246 n n O4B C1B NAD sing 247 n n C3B O3B NAD sing 248 n n C3B C2B NAD sing 249 n n C3B H3B NAD sing 250 n n O3B HO3A NAD sing 251 n n C2B O2B NAD sing 252 n n C2B C1B NAD sing 253 n n C2B H2B NAD sing 254 n n O2B HO2A NAD sing 255 n n C1B N9A NAD sing 256 n n C1B H1B NAD sing 257 n n N9A C8A NAD sing 258 n y N9A C4A NAD sing 259 n y C8A N7A NAD doub 260 n y C8A H8A NAD sing 261 n n N7A C5A NAD sing 262 n y C5A C6A NAD sing 263 n y C5A C4A NAD doub 264 n y C6A N6A NAD sing 265 n n C6A N1A NAD doub 266 n y N6A H61A NAD sing 267 n n N6A H62A NAD sing 268 n n N1A C2A NAD sing 269 n y C2A N3A NAD doub 270 n y C2A H2A NAD sing 271 n n N3A C4A NAD sing 272 n y O3 PN NAD sing 273 n n PN O1N NAD doub 274 n n PN O2N NAD sing 275 n n PN O5D NAD sing 276 n n O5D C5D NAD sing 277 n n C5D C4D NAD sing 278 n n C5D H51N NAD sing 279 n n C5D H52N NAD sing 280 n n C4D O4D NAD sing 281 n n C4D C3D NAD sing 282 n n C4D H4D NAD sing 283 n n O4D C1D NAD sing 284 n n C3D O3D NAD sing 285 n n C3D C2D NAD sing 286 n n C3D H3D NAD sing 287 n n O3D HO3N NAD sing 288 n n C2D O2D NAD sing 289 n n C2D C1D NAD sing 290 n n C2D H2D NAD sing 291 n n O2D HO2N NAD sing 292 n n C1D N1N NAD sing 293 n n C1D H1D NAD sing 294 n n N1N C2N NAD sing 295 n y N1N C6N NAD doub 296 n y C2N C3N NAD doub 297 n y C2N H2N NAD sing 298 n n C3N C7N NAD sing 299 n n C3N C4N NAD sing 300 n y C7N O7N NAD doub 301 n n C7N N7N NAD sing 302 n n N7N H71N NAD sing 303 n n N7N H72N NAD sing 304 n n C4N C5N NAD doub 305 n y C4N H4N NAD sing 306 n n C5N C6N NAD sing 307 n y C5N H5N NAD sing 308 n n C6N H6N NAD sing 309 n n # _atom_sites.entry_id 4M55 _atom_sites.fract_transf_matrix[1][1] 0.012023 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011745 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003418 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 NAD A 1 501 800 NAD NAD . H 3 POP A 1 502 503 POP POP . I 4 SO4 A 1 503 1 SO4 SO4 . J 2 NAD B 1 501 800 NAD NAD . K 5 UDP B 1 502 901 UDP UDP . L 4 SO4 B 1 503 2 SO4 SO4 . M 2 NAD C 1 501 800 NAD NAD . N 3 POP C 1 502 503 POP POP . O 4 SO4 C 1 503 3 SO4 SO4 . P 2 NAD D 1 501 800 NAD NAD . Q 5 UDP D 1 502 901 UDP UDP . R 2 NAD E 1 800 800 NAD NAD . S 2 NAD F 1 800 800 NAD NAD . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . P 2 27.198 3.04 340.543 1 99.99 ? PA NAD 501 D 1 HETATM 2 O O1A NAD . . . P 2 27.591 1.61 340.245 1 89.13 ? O1A NAD 501 D 1 HETATM 3 O O2A NAD . . . P 2 27.668 4.165 339.642 1 100.95 ? O2A NAD 501 D 1 HETATM 4 O O5B NAD . . . P 2 25.585 3.017 340.659 1 118.66 ? O5B NAD 501 D 1 HETATM 5 C C5B NAD . . . P 2 24.817 4.119 340.197 1 117.3 ? C5B NAD 501 D 1 HETATM 6 C C4B NAD . . . P 2 23.555 3.584 339.55 1 115.05 ? C4B NAD 501 D 1 HETATM 7 O O4B NAD . . . P 2 22.596 4.639 339.481 1 111.81 ? O4B NAD 501 D 1 HETATM 8 C C3B NAD . . . P 2 23.795 3.098 338.13 1 118.2 ? C3B NAD 501 D 1 HETATM 9 O O3B NAD . . . P 2 23.14 1.833 337.976 1 120.77 ? O3B NAD 501 D 1 HETATM 10 C C2B NAD . . . P 2 23.136 4.148 337.25 1 114.65 ? C2B NAD 501 D 1 HETATM 11 O O2B NAD . . . P 2 22.537 3.608 336.068 1 114.09 ? O2B NAD 501 D 1 HETATM 12 C C1B NAD . . . P 2 22.066 4.711 338.164 1 106.8 ? C1B NAD 501 D 1 HETATM 13 N N9A NAD . . . P 2 21.736 6.115 337.863 1 92.27 ? N9A NAD 501 D 1 HETATM 14 C C8A NAD . . . P 2 22.576 7.173 337.782 1 89.18 ? C8A NAD 501 D 1 HETATM 15 N N7A NAD . . . P 2 21.895 8.318 337.486 1 81.02 ? N7A NAD 501 D 1 HETATM 16 C C5A NAD . . . P 2 20.588 7.968 337.383 1 73.33 ? C5A NAD 501 D 1 HETATM 17 C C6A NAD . . . P 2 19.32 8.654 337.111 1 67.4 ? C6A NAD 501 D 1 HETATM 18 N N6A NAD . . . P 2 19.296 9.984 336.879 1 63.72 ? N6A NAD 501 D 1 HETATM 19 N N1A NAD . . . P 2 18.191 7.916 337.098 1 81.93 ? N1A NAD 501 D 1 HETATM 20 C C2A NAD . . . P 2 18.172 6.594 337.333 1 83.85 ? C2A NAD 501 D 1 HETATM 21 N N3A NAD . . . P 2 19.283 5.897 337.595 1 80.87 ? N3A NAD 501 D 1 HETATM 22 C C4A NAD . . . P 2 20.491 6.521 337.629 1 81.7 ? C4A NAD 501 D 1 HETATM 23 O O3 NAD . . . P 2 27.594 3.508 342.03 1 86.12 ? O3 NAD 501 D 1 HETATM 24 P PN NAD . . . P 2 27.625 2.528 343.311 1 89.64 ? PN NAD 501 D 1 HETATM 25 O O1N NAD . . . P 2 26.628 1.381 343.156 1 86.74 ? O1N NAD 501 D 1 HETATM 26 O O2N NAD . . . P 2 29.087 2.265 343.588 1 96.9 ? O2N NAD 501 D 1 HETATM 27 O O5D NAD . . . P 2 27.058 3.566 344.406 1 100.12 ? O5D NAD 501 D 1 HETATM 28 C C5D NAD . . . P 2 25.777 3.393 345.024 1 97.77 ? C5D NAD 501 D 1 HETATM 29 C C4D NAD . . . P 2 25.619 4.509 346.03 1 92.48 ? C4D NAD 501 D 1 HETATM 30 O O4D NAD . . . P 2 26.605 4.349 347.049 1 98.58 ? O4D NAD 501 D 1 HETATM 31 C C3D NAD . . . P 2 25.924 5.809 345.322 1 87.1 ? C3D NAD 501 D 1 HETATM 32 O O3D NAD . . . P 2 24.879 6.728 345.588 1 88.82 ? O3D NAD 501 D 1 HETATM 33 C C2D NAD . . . P 2 27.149 6.378 345.981 1 97.23 ? C2D NAD 501 D 1 HETATM 34 O O2D NAD . . . P 2 26.912 7.766 346.213 1 102.05 ? O2D NAD 501 D 1 HETATM 35 C C1D NAD . . . P 2 27.283 5.592 347.278 1 101.22 ? C1D NAD 501 D 1 HETATM 36 N N1N NAD . . . P 2 28.682 5.351 347.664 1 105.88 ? N1N NAD 501 D 1 HETATM 37 C C2N NAD . . . P 2 29.33 4.319 347.106 1 109.29 ? C2N NAD 501 D 1 HETATM 38 C C3N NAD . . . P 2 30.653 4.046 347.437 1 110.17 ? C3N NAD 501 D 1 HETATM 39 C C7N NAD . . . P 2 31.328 2.878 346.782 1 113.15 ? C7N NAD 501 D 1 HETATM 40 O O7N NAD . . . P 2 32.52 2.968 346.487 1 122.42 ? O7N NAD 501 D 1 HETATM 41 N N7N NAD . . . P 2 30.58 1.794 346.521 1 102.41 ? N7N NAD 501 D 1 HETATM 42 C C4N NAD . . . P 2 31.312 4.842 348.376 1 106.39 ? C4N NAD 501 D 1 HETATM 43 C C5N NAD . . . P 2 30.623 5.91 348.951 1 105.43 ? C5N NAD 501 D 1 HETATM 44 C C6N NAD . . . P 2 29.298 6.139 348.569 1 106.85 ? C6N NAD 501 D 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 44 #