data_4M55 # _model_server_result.job_id 1E1xbqZFqyy_8TrptJ1pFg _model_server_result.datetime_utc '2024-10-13 19:23:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4m55 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":502}' # _entry.id 4M55 # _exptl.entry_id 4M55 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 175.959 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PYROPHOSPHATE 2-' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4M55 _cell.length_a 83.171 _cell.length_b 85.145 _cell.length_c 292.549 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4M55 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 H N N ? 3 N N N # _chem_comp.formula 'H2 O7 P2 -2' _chem_comp.formula_weight 175.959 _chem_comp.id POP _chem_comp.mon_nstd_flag . _chem_comp.name 'PYROPHOSPHATE 2-' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P1 O1 POP doub 333 n n P1 O2 POP sing 334 n n P1 O3 POP sing 335 n n P1 O POP sing 336 n n O2 HO2 POP sing 337 n n O P2 POP sing 338 n n P2 O4 POP doub 339 n n P2 O5 POP sing 340 n n P2 O6 POP sing 341 n n O5 HO5 POP sing 342 n n # _atom_sites.entry_id 4M55 _atom_sites.fract_transf_matrix[1][1] 0.012023 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011745 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003418 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 NAD A 1 501 800 NAD NAD . H 3 POP A 1 502 503 POP POP . I 4 SO4 A 1 503 1 SO4 SO4 . J 2 NAD B 1 501 800 NAD NAD . K 5 UDP B 1 502 901 UDP UDP . L 4 SO4 B 1 503 2 SO4 SO4 . M 2 NAD C 1 501 800 NAD NAD . N 3 POP C 1 502 503 POP POP . O 4 SO4 C 1 503 3 SO4 SO4 . P 2 NAD D 1 501 800 NAD NAD . Q 5 UDP D 1 502 901 UDP UDP . R 2 NAD E 1 800 800 NAD NAD . S 2 NAD F 1 800 800 NAD NAD . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P1 POP . . . N 3 17.75 21.313 329.56 0.19 109.12 ? P1 POP 502 C 1 HETATM 2 O O1 POP . . . N 3 16.695 22.307 329.111 1 103.69 ? O1 POP 502 C 1 HETATM 3 O O2 POP . . . N 3 17.082 20.001 329.917 1 110.3 ? O2 POP 502 C 1 HETATM 4 O O3 POP . . . N 3 18.758 21.04 328.463 1 111.45 ? O3 POP 502 C 1 HETATM 5 O O POP . . . N 3 18.543 21.901 330.841 1 115.49 ? O POP 502 C 1 HETATM 6 P P2 POP . . . N 3 19.185 23.385 330.91 1 173.57 ? P2 POP 502 C 1 HETATM 7 O O4 POP . . . N 3 18.282 24.237 331.771 1 175.9 ? O4 POP 502 C 1 HETATM 8 O O5 POP . . . N 3 20.546 23.334 331.559 1 174.86 ? O5 POP 502 C 1 HETATM 9 O O6 POP . . . N 3 19.31 24.001 329.535 1 171.1 ? O6 POP 502 C 1 # _model_server_stats.io_time_ms 28 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 34 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 9 #