data_4M5B # _model_server_result.job_id Jr1OqiZvx79ERN4-Tvy6tg _model_server_result.datetime_utc '2024-11-19 09:24:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4m5b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"X","auth_seq_id":323}' # _entry.id 4M5B # _exptl.entry_id 4M5B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description HEXANE-1,6-DIOL _entity.pdbx_number_of_molecules 23 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4M5B _cell.length_a 64.371 _cell.length_b 103.16 _cell.length_c 120.914 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4M5B _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N ? 2 O N N ? 2 P N N ? 2 Q N N ? 2 R N N ? 2 S N N ? 2 T N N ? 2 U N N ? 2 V N N ? 2 W N N ? 2 X N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A N MET 1 A MET 1 1_555 Y NI NI . A NI 324 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? metalc ? metalc2 A N HIS 2 A HIS 2 1_555 Y NI NI . A NI 324 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.224 ? metalc ? metalc3 A ND1 HIS 2 A HIS 2 1_555 Y NI NI . A NI 324 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc4 A NE2 HIS 67 A HIS 67 1_555 Y NI NI . A NI 324 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id HEZ _chem_comp.mon_nstd_flag . _chem_comp.name HEXANE-1,6-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 HEZ sing 129 n n O1 HO1 HEZ sing 130 n n C1 C2 HEZ sing 131 n n C1 H11 HEZ sing 132 n n C1 H12 HEZ sing 133 n n C2 C3 HEZ sing 134 n n C2 H21 HEZ sing 135 n n C2 H22 HEZ sing 136 n n C3 C4 HEZ sing 137 n n C3 H31 HEZ sing 138 n n C3 H32 HEZ sing 139 n n C4 C5 HEZ sing 140 n n C4 H41 HEZ sing 141 n n C4 H42 HEZ sing 142 n n C5 C6 HEZ sing 143 n n C5 H51 HEZ sing 144 n n C5 H52 HEZ sing 145 n n C6 O6 HEZ sing 146 n n C6 H61 HEZ sing 147 n n C6 H62 HEZ sing 148 n n O6 HO6 HEZ sing 149 n n # _atom_sites.entry_id 4M5B _atom_sites.fract_transf_matrix[1][1] 0.015535 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009694 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00827 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEZ A 1 301 1 HEZ HEZ . C 2 HEZ A 1 302 1 HEZ HEZ . D 2 HEZ A 1 303 1 HEZ HEZ . E 2 HEZ A 1 304 1 HEZ HEZ . F 2 HEZ A 1 305 1 HEZ HEZ . G 2 HEZ A 1 306 1 HEZ HEZ . H 2 HEZ A 1 307 1 HEZ HEZ . I 2 HEZ A 1 308 1 HEZ HEZ . J 2 HEZ A 1 309 1 HEZ HEZ . K 2 HEZ A 1 310 1 HEZ HEZ . L 2 HEZ A 1 311 1 HEZ HEZ . M 2 HEZ A 1 312 1 HEZ HEZ . N 2 HEZ A 1 313 1 HEZ HEZ . O 2 HEZ A 1 314 1 HEZ HEZ . P 2 HEZ A 1 315 1 HEZ HEZ . Q 2 HEZ A 1 316 1 HEZ HEZ . R 2 HEZ A 1 317 1 HEZ HEZ . S 2 HEZ A 1 318 1 HEZ HEZ . T 2 HEZ A 1 319 1 HEZ HEZ . U 2 HEZ A 1 320 1 HEZ HEZ . V 2 HEZ A 1 321 1 HEZ HEZ . W 2 HEZ A 1 322 1 HEZ HEZ . X 2 HEZ A 1 323 1 HEZ HEZ . Y 3 NI A 1 324 1 NI NI . Z 4 HOH A 1 401 1 HOH HOH . Z 4 HOH A 2 402 2 HOH HOH . Z 4 HOH A 3 403 3 HOH HOH . Z 4 HOH A 4 404 4 HOH HOH . Z 4 HOH A 5 405 5 HOH HOH . Z 4 HOH A 6 406 6 HOH HOH . Z 4 HOH A 7 407 7 HOH HOH . Z 4 HOH A 8 408 8 HOH HOH . Z 4 HOH A 9 409 9 HOH HOH . Z 4 HOH A 10 410 10 HOH HOH . Z 4 HOH A 11 411 11 HOH HOH . Z 4 HOH A 12 412 12 HOH HOH . Z 4 HOH A 13 413 13 HOH HOH . Z 4 HOH A 14 414 14 HOH HOH . Z 4 HOH A 15 415 15 HOH HOH . Z 4 HOH A 16 416 16 HOH HOH . Z 4 HOH A 17 417 17 HOH HOH . Z 4 HOH A 18 418 18 HOH HOH . Z 4 HOH A 19 419 19 HOH HOH . Z 4 HOH A 20 420 20 HOH HOH . Z 4 HOH A 21 421 21 HOH HOH . Z 4 HOH A 22 422 22 HOH HOH . Z 4 HOH A 23 423 23 HOH HOH . Z 4 HOH A 24 424 24 HOH HOH . Z 4 HOH A 25 425 25 HOH HOH . Z 4 HOH A 26 426 26 HOH HOH . Z 4 HOH A 27 427 27 HOH HOH . Z 4 HOH A 28 428 28 HOH HOH . Z 4 HOH A 29 429 29 HOH HOH . Z 4 HOH A 30 430 30 HOH HOH . Z 4 HOH A 31 431 31 HOH HOH . Z 4 HOH A 32 432 32 HOH HOH . Z 4 HOH A 33 433 33 HOH HOH . Z 4 HOH A 34 434 34 HOH HOH . Z 4 HOH A 35 435 35 HOH HOH . Z 4 HOH A 36 436 36 HOH HOH . Z 4 HOH A 37 437 37 HOH HOH . Z 4 HOH A 38 438 38 HOH HOH . Z 4 HOH A 39 439 39 HOH HOH . Z 4 HOH A 40 440 40 HOH HOH . Z 4 HOH A 41 441 41 HOH HOH . Z 4 HOH A 42 442 42 HOH HOH . Z 4 HOH A 43 443 43 HOH HOH . Z 4 HOH A 44 444 44 HOH HOH . Z 4 HOH A 45 445 45 HOH HOH . Z 4 HOH A 46 446 46 HOH HOH . Z 4 HOH A 47 447 47 HOH HOH . Z 4 HOH A 48 448 48 HOH HOH . Z 4 HOH A 49 449 49 HOH HOH . Z 4 HOH A 50 450 50 HOH HOH . Z 4 HOH A 51 451 51 HOH HOH . Z 4 HOH A 52 452 52 HOH HOH . Z 4 HOH A 53 453 53 HOH HOH . Z 4 HOH A 54 454 54 HOH HOH . Z 4 HOH A 55 455 55 HOH HOH . Z 4 HOH A 56 456 56 HOH HOH . Z 4 HOH A 57 457 57 HOH HOH . Z 4 HOH A 58 458 58 HOH HOH . Z 4 HOH A 59 459 59 HOH HOH . Z 4 HOH A 60 460 60 HOH HOH . Z 4 HOH A 61 461 61 HOH HOH . Z 4 HOH A 62 462 62 HOH HOH . Z 4 HOH A 63 463 63 HOH HOH . Z 4 HOH A 64 464 64 HOH HOH . Z 4 HOH A 65 465 65 HOH HOH . Z 4 HOH A 66 466 66 HOH HOH . Z 4 HOH A 67 467 67 HOH HOH . Z 4 HOH A 68 468 68 HOH HOH . Z 4 HOH A 69 469 69 HOH HOH . Z 4 HOH A 70 470 70 HOH HOH . Z 4 HOH A 71 471 71 HOH HOH . Z 4 HOH A 72 472 72 HOH HOH . Z 4 HOH A 73 473 73 HOH HOH . Z 4 HOH A 74 474 74 HOH HOH . Z 4 HOH A 75 475 75 HOH HOH . Z 4 HOH A 76 476 76 HOH HOH . Z 4 HOH A 77 477 77 HOH HOH . Z 4 HOH A 78 478 78 HOH HOH . Z 4 HOH A 79 479 79 HOH HOH . Z 4 HOH A 80 480 80 HOH HOH . Z 4 HOH A 81 481 81 HOH HOH . Z 4 HOH A 82 482 82 HOH HOH . Z 4 HOH A 83 483 83 HOH HOH . Z 4 HOH A 84 484 84 HOH HOH . Z 4 HOH A 85 485 85 HOH HOH . Z 4 HOH A 86 486 86 HOH HOH . Z 4 HOH A 87 487 87 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 HEZ . . . X 2 74.185 108.997 19.614 1 86.72 ? O1 HEZ 323 A 1 HETATM 2 C C1 HEZ . . . X 2 74.224 109.107 18.237 1 85.8 ? C1 HEZ 323 A 1 HETATM 3 C C2 HEZ . . . X 2 75.455 109.684 17.623 1 79.48 ? C2 HEZ 323 A 1 HETATM 4 C C3 HEZ . . . X 2 76.457 108.74 17.051 1 72.41 ? C3 HEZ 323 A 1 HETATM 5 C C4 HEZ . . . X 2 76.096 108.036 15.79 1 76.67 ? C4 HEZ 323 A 1 HETATM 6 C C5 HEZ . . . X 2 77.204 107.477 14.961 1 79.33 ? C5 HEZ 323 A 1 HETATM 7 C C6 HEZ . . . X 2 76.825 106.578 13.832 1 84.62 ? C6 HEZ 323 A 1 HETATM 8 O O6 HEZ . . . X 2 77.762 106.354 12.844 1 88.57 ? O6 HEZ 323 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 476 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 8 #