data_4M5I # _model_server_result.job_id 9pToT91nTR6rSNFFu7p5pA _model_server_result.datetime_utc '2024-11-08 07:32:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4m5i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 4M5I # _exptl.entry_id 4M5I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 115.63 _cell.angle_gamma 90 _cell.entry_id 4M5I _cell.length_a 35.918 _cell.length_b 58.147 _cell.length_c 38.443 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4M5I _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLY 30 A GLY 26 1_555 D CA CA . A CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.5 ? metalc ? metalc2 A O ILE 32 A ILE 28 1_555 D CA CA . A CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc3 A O SER 35 A SER 31 1_555 D CA CA . A CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc4 A OD1 ASP 99 A ASP 95 1_555 B CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc5 A OD2 ASP 99 A ASP 95 1_555 C CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? metalc ? metalc6 A OD1 ASP 101 A ASP 97 1_555 B CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? metalc ? metalc7 A OD2 ASP 101 A ASP 97 1_555 C CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? metalc ? metalc8 B CA CA . A CA 201 1_555 E O1A APC . A APC 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? metalc ? metalc9 B CA CA . A CA 201 1_555 E O1B APC . A APC 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? metalc ? metalc10 B CA CA . A CA 201 1_555 H O HOH . A HOH 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? metalc ? metalc11 B CA CA . A CA 201 1_555 H O HOH . A HOH 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? metalc ? metalc12 C CA CA . A CA 202 1_555 E O2G APC . A APC 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? metalc ? metalc13 C CA CA . A CA 202 1_555 E O1B APC . A APC 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc14 C CA CA . A CA 202 1_555 H O HOH . A HOH 346 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.51 ? metalc ? metalc15 C CA CA . A CA 202 1_555 H O HOH . A HOH 353 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc16 D CA CA . A CA 203 1_555 H O HOH . A HOH 324 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? metalc ? metalc17 D CA CA . A CA 203 1_555 H O HOH . A HOH 340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.572 ? metalc ? metalc18 D CA CA . A CA 203 1_555 H O HOH . A HOH 352 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4M5I _atom_sites.fract_transf_matrix[1][1] 0.027841 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.013355 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017198 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02885 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 201 1 CA CA . C 2 CA A 1 202 2 CA CA . D 2 CA A 1 203 3 CA CA . E 3 APC A 1 204 301 APC APC . F 4 YH6 A 1 205 401 YH6 YH6 . G 5 CL A 1 206 1 CL CL . H 6 HOH A 1 301 1 HOH HOH . H 6 HOH A 2 302 2 HOH HOH . H 6 HOH A 3 303 3 HOH HOH . H 6 HOH A 4 304 4 HOH HOH . H 6 HOH A 5 305 5 HOH HOH . H 6 HOH A 6 306 6 HOH HOH . H 6 HOH A 7 307 7 HOH HOH . H 6 HOH A 8 308 8 HOH HOH . H 6 HOH A 9 309 9 HOH HOH . H 6 HOH A 10 310 10 HOH HOH . H 6 HOH A 11 311 11 HOH HOH . H 6 HOH A 12 312 12 HOH HOH . H 6 HOH A 13 313 13 HOH HOH . H 6 HOH A 14 314 14 HOH HOH . H 6 HOH A 15 315 15 HOH HOH . H 6 HOH A 16 316 16 HOH HOH . H 6 HOH A 17 317 17 HOH HOH . H 6 HOH A 18 318 18 HOH HOH . H 6 HOH A 19 319 19 HOH HOH . H 6 HOH A 20 320 20 HOH HOH . H 6 HOH A 21 321 21 HOH HOH . H 6 HOH A 22 322 22 HOH HOH . H 6 HOH A 23 323 23 HOH HOH . H 6 HOH A 24 324 24 HOH HOH . H 6 HOH A 25 325 25 HOH HOH . H 6 HOH A 26 326 26 HOH HOH . H 6 HOH A 27 327 27 HOH HOH . H 6 HOH A 28 328 28 HOH HOH . H 6 HOH A 29 329 29 HOH HOH . H 6 HOH A 30 330 30 HOH HOH . H 6 HOH A 31 331 31 HOH HOH . H 6 HOH A 32 332 32 HOH HOH . H 6 HOH A 33 333 33 HOH HOH . H 6 HOH A 34 334 34 HOH HOH . H 6 HOH A 35 335 35 HOH HOH . H 6 HOH A 36 336 36 HOH HOH . H 6 HOH A 37 337 37 HOH HOH . H 6 HOH A 38 338 38 HOH HOH . H 6 HOH A 39 339 39 HOH HOH . H 6 HOH A 40 340 40 HOH HOH . H 6 HOH A 41 341 41 HOH HOH . H 6 HOH A 42 342 42 HOH HOH . H 6 HOH A 43 343 43 HOH HOH . H 6 HOH A 44 344 44 HOH HOH . H 6 HOH A 45 345 45 HOH HOH . H 6 HOH A 46 346 46 HOH HOH . H 6 HOH A 47 347 47 HOH HOH . H 6 HOH A 48 348 48 HOH HOH . H 6 HOH A 49 349 49 HOH HOH . H 6 HOH A 50 350 50 HOH HOH . H 6 HOH A 51 351 51 HOH HOH . H 6 HOH A 52 352 52 HOH HOH . H 6 HOH A 53 353 53 HOH HOH . H 6 HOH A 54 354 55 HOH HOH . H 6 HOH A 55 355 56 HOH HOH . H 6 HOH A 56 356 57 HOH HOH . H 6 HOH A 57 357 58 HOH HOH . H 6 HOH A 58 358 59 HOH HOH . H 6 HOH A 59 359 60 HOH HOH . H 6 HOH A 60 360 61 HOH HOH . H 6 HOH A 61 361 62 HOH HOH . H 6 HOH A 62 362 63 HOH HOH . H 6 HOH A 63 363 64 HOH HOH . H 6 HOH A 64 364 65 HOH HOH . H 6 HOH A 65 365 66 HOH HOH . H 6 HOH A 66 366 67 HOH HOH . H 6 HOH A 67 367 68 HOH HOH . H 6 HOH A 68 368 69 HOH HOH . H 6 HOH A 69 369 70 HOH HOH . H 6 HOH A 70 370 71 HOH HOH . H 6 HOH A 71 371 72 HOH HOH . H 6 HOH A 72 372 73 HOH HOH . H 6 HOH A 73 373 74 HOH HOH . H 6 HOH A 74 374 75 HOH HOH . H 6 HOH A 75 375 76 HOH HOH . H 6 HOH A 76 376 77 HOH HOH . H 6 HOH A 77 377 78 HOH HOH . H 6 HOH A 78 378 79 HOH HOH . H 6 HOH A 79 379 80 HOH HOH . H 6 HOH A 80 380 82 HOH HOH . H 6 HOH A 81 381 83 HOH HOH . H 6 HOH A 82 382 84 HOH HOH . H 6 HOH A 83 383 85 HOH HOH . H 6 HOH A 84 384 86 HOH HOH . H 6 HOH A 85 385 87 HOH HOH . H 6 HOH A 86 386 88 HOH HOH . H 6 HOH A 87 387 89 HOH HOH . H 6 HOH A 88 388 90 HOH HOH . H 6 HOH A 89 389 91 HOH HOH . H 6 HOH A 90 390 92 HOH HOH . H 6 HOH A 91 391 93 HOH HOH . H 6 HOH A 92 392 94 HOH HOH . H 6 HOH A 93 393 95 HOH HOH . H 6 HOH A 94 394 96 HOH HOH . H 6 HOH A 95 395 97 HOH HOH . H 6 HOH A 96 396 98 HOH HOH . H 6 HOH A 97 397 99 HOH HOH . H 6 HOH A 98 398 100 HOH HOH . H 6 HOH A 99 399 101 HOH HOH . H 6 HOH A 100 400 102 HOH HOH . H 6 HOH A 101 401 103 HOH HOH . H 6 HOH A 102 402 104 HOH HOH . H 6 HOH A 103 403 105 HOH HOH . H 6 HOH A 104 404 106 HOH HOH . H 6 HOH A 105 405 107 HOH HOH . H 6 HOH A 106 406 108 HOH HOH . H 6 HOH A 107 407 109 HOH HOH . H 6 HOH A 108 408 110 HOH HOH . H 6 HOH A 109 409 111 HOH HOH . H 6 HOH A 110 410 112 HOH HOH . H 6 HOH A 111 411 113 HOH HOH . H 6 HOH A 112 412 114 HOH HOH . H 6 HOH A 113 413 115 HOH HOH . H 6 HOH A 114 414 116 HOH HOH . H 6 HOH A 115 415 117 HOH HOH . H 6 HOH A 116 416 118 HOH HOH . H 6 HOH A 117 417 119 HOH HOH . H 6 HOH A 118 418 120 HOH HOH . H 6 HOH A 119 419 121 HOH HOH . H 6 HOH A 120 420 122 HOH HOH . H 6 HOH A 121 421 124 HOH HOH . H 6 HOH A 122 422 125 HOH HOH . H 6 HOH A 123 423 126 HOH HOH . H 6 HOH A 124 424 127 HOH HOH . H 6 HOH A 125 425 128 HOH HOH . H 6 HOH A 126 426 129 HOH HOH . H 6 HOH A 127 427 130 HOH HOH . H 6 HOH A 128 428 131 HOH HOH . H 6 HOH A 129 429 132 HOH HOH . H 6 HOH A 130 430 133 HOH HOH . H 6 HOH A 131 431 134 HOH HOH . H 6 HOH A 132 432 135 HOH HOH . H 6 HOH A 133 433 136 HOH HOH . H 6 HOH A 134 434 137 HOH HOH . H 6 HOH A 135 435 138 HOH HOH . H 6 HOH A 136 436 139 HOH HOH . H 6 HOH A 137 437 140 HOH HOH . H 6 HOH A 138 438 141 HOH HOH . H 6 HOH A 139 439 142 HOH HOH . H 6 HOH A 140 440 143 HOH HOH . H 6 HOH A 141 441 144 HOH HOH . H 6 HOH A 142 442 145 HOH HOH . H 6 HOH A 143 443 146 HOH HOH . H 6 HOH A 144 444 147 HOH HOH . H 6 HOH A 145 445 148 HOH HOH . H 6 HOH A 146 446 149 HOH HOH . H 6 HOH A 147 447 150 HOH HOH . H 6 HOH A 148 448 151 HOH HOH . H 6 HOH A 149 449 152 HOH HOH . H 6 HOH A 150 450 153 HOH HOH . H 6 HOH A 151 451 154 HOH HOH . H 6 HOH A 152 452 155 HOH HOH . H 6 HOH A 153 453 156 HOH HOH . H 6 HOH A 154 454 157 HOH HOH . H 6 HOH A 155 455 158 HOH HOH . H 6 HOH A 156 456 159 HOH HOH . H 6 HOH A 157 457 160 HOH HOH . H 6 HOH A 158 458 161 HOH HOH . H 6 HOH A 159 459 162 HOH HOH . H 6 HOH A 160 460 163 HOH HOH . H 6 HOH A 161 461 165 HOH HOH . H 6 HOH A 162 462 166 HOH HOH . H 6 HOH A 163 463 167 HOH HOH . H 6 HOH A 164 464 168 HOH HOH . H 6 HOH A 165 465 169 HOH HOH . H 6 HOH A 166 466 170 HOH HOH . H 6 HOH A 167 467 171 HOH HOH . H 6 HOH A 168 468 172 HOH HOH . H 6 HOH A 169 469 173 HOH HOH . H 6 HOH A 170 470 174 HOH HOH . H 6 HOH A 171 471 175 HOH HOH . H 6 HOH A 172 472 177 HOH HOH . H 6 HOH A 173 473 178 HOH HOH . H 6 HOH A 174 474 179 HOH HOH . H 6 HOH A 175 475 180 HOH HOH . H 6 HOH A 176 476 181 HOH HOH . H 6 HOH A 177 477 182 HOH HOH . H 6 HOH A 178 478 183 HOH HOH . H 6 HOH A 179 479 184 HOH HOH . H 6 HOH A 180 480 185 HOH HOH . H 6 HOH A 181 481 186 HOH HOH . H 6 HOH A 182 482 187 HOH HOH . H 6 HOH A 183 483 188 HOH HOH . H 6 HOH A 184 484 189 HOH HOH . H 6 HOH A 185 485 190 HOH HOH . H 6 HOH A 186 486 191 HOH HOH . H 6 HOH A 187 487 192 HOH HOH . H 6 HOH A 188 488 193 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x 61.794 _atom_site.Cartn_y -11.19 _atom_site.Cartn_z 48.078 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 9.67 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 203 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #