data_4M5J
#
_model_server_result.job_id            JMZLaD0IvuacHnTXlBg-XQ 
_model_server_result.datetime_utc      '2024-11-22 22:20:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4m5j 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":302}' 
#
_entry.id    4M5J 
#
_exptl.entry_id    4M5J 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              331.35 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-amino-8-{[2-(4-methoxyphenyl)-2-oxoethyl]sulfanyl}-1,9-dihydro-6H-purin-6-one 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          113.76 
_cell.angle_gamma         90 
_cell.entry_id            4M5J 
_cell.length_a            36.458 
_cell.length_b            58.264 
_cell.length_c            38.374 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4M5J 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD2 ASP 99 A ASP 95 1_555 D MG MG . A MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? 
metalc ? metalc2 A OD1 ASP 99 A ASP 95 1_555 E MG MG . A MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? 
metalc ? metalc3 A OD2 ASP 101 A ASP 97 1_555 D MG MG . A MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? 
metalc ? metalc4 A OD1 ASP 101 A ASP 97 1_555 E MG MG . A MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? 
metalc ? metalc5 B O1B APC . A APC 301 1_555 D MG MG . A MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? 
metalc ? metalc6 B O2G APC . A APC 301 1_555 D MG MG . A MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.487 ? 
metalc ? metalc7 B O1B APC . A APC 301 1_555 E MG MG . A MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? 
metalc ? metalc8 B O1A APC . A APC 301 1_555 E MG MG . A MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? 
metalc ? metalc9 E MG MG . A MG 304 1_555 H O HOH . A HOH 459 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? 
metalc ? metalc10 E MG MG . A MG 304 1_555 H O HOH . A HOH 460 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? 
#
_chem_comp.formula           'C14 H13 N5 O3 S' 
_chem_comp.formula_weight    331.35 
_chem_comp.id                YH5 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-amino-8-{[2-(4-methoxyphenyl)-2-oxoethyl]sulfanyl}-1,9-dihydro-6H-purin-6-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C14 O3 YH5 sing 414 n n 
O3 C11 YH5 sing 415 n n 
C11 C10 YH5 doub 416 n y 
C11 C12 YH5 sing 417 n y 
C10 C9 YH5 sing 418 n y 
C12 C13 YH5 doub 419 n y 
C9 C8 YH5 doub 420 n y 
C13 C8 YH5 sing 421 n y 
C8 C7 YH5 sing 422 n n 
O1 C1 YH5 doub 423 n n 
C7 O2 YH5 doub 424 n n 
C7 C6 YH5 sing 425 n n 
C6 S1 YH5 sing 426 n n 
C1 C2 YH5 sing 427 n n 
C1 N4 YH5 sing 428 n n 
N1 C2 YH5 sing 429 n y 
N1 C3 YH5 doub 430 n y 
C2 C4 YH5 doub 431 n y 
N4 C5 YH5 sing 432 n n 
C3 S1 YH5 sing 433 n n 
C3 N2 YH5 sing 434 n y 
C4 N2 YH5 sing 435 n y 
C4 N3 YH5 sing 436 n n 
C5 N3 YH5 doub 437 n n 
C5 N5 YH5 sing 438 n n 
C10 H2 YH5 sing 439 n n 
C12 H3 YH5 sing 440 n n 
C13 H4 YH5 sing 441 n n 
C14 H5 YH5 sing 442 n n 
C14 H6 YH5 sing 443 n n 
C14 H7 YH5 sing 444 n n 
N2 H8 YH5 sing 445 n n 
N4 H9 YH5 sing 446 n n 
N5 H10 YH5 sing 447 n n 
N5 H11 YH5 sing 448 n n 
C6 H12 YH5 sing 449 n n 
C6 H13 YH5 sing 450 n n 
C9 H14 YH5 sing 451 n n 
#
_atom_sites.entry_id                     4M5J 
_atom_sites.fract_transf_matrix[1][1]    0.027429 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.012074 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017163 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.028472 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 APC A 1 301 301 APC APC . 
C 3 YH5 A 1 302 401 YH5 YH5 . 
D 4 MG A 1 303 201 MG MG . 
E 4 MG A 1 304 202 MG MG . 
F 5 CL A 1 305 501 CL CL . 
G 5 CL A 1 306 502 CL CL . 
H 6 HOH A 1 401 1 HOH HOH . 
H 6 HOH A 2 402 2 HOH HOH . 
H 6 HOH A 3 403 3 HOH HOH . 
H 6 HOH A 4 404 4 HOH HOH . 
H 6 HOH A 5 405 5 HOH HOH . 
H 6 HOH A 6 406 6 HOH HOH . 
H 6 HOH A 7 407 7 HOH HOH . 
H 6 HOH A 8 408 8 HOH HOH . 
H 6 HOH A 9 409 9 HOH HOH . 
H 6 HOH A 10 410 10 HOH HOH . 
H 6 HOH A 11 411 11 HOH HOH . 
H 6 HOH A 12 412 12 HOH HOH . 
H 6 HOH A 13 413 13 HOH HOH . 
H 6 HOH A 14 414 14 HOH HOH . 
H 6 HOH A 15 415 15 HOH HOH . 
H 6 HOH A 16 416 16 HOH HOH . 
H 6 HOH A 17 417 17 HOH HOH . 
H 6 HOH A 18 418 18 HOH HOH . 
H 6 HOH A 19 419 19 HOH HOH . 
H 6 HOH A 20 420 20 HOH HOH . 
H 6 HOH A 21 421 21 HOH HOH . 
H 6 HOH A 22 422 22 HOH HOH . 
H 6 HOH A 23 423 23 HOH HOH . 
H 6 HOH A 24 424 24 HOH HOH . 
H 6 HOH A 25 425 25 HOH HOH . 
H 6 HOH A 26 426 26 HOH HOH . 
H 6 HOH A 27 427 27 HOH HOH . 
H 6 HOH A 28 428 28 HOH HOH . 
H 6 HOH A 29 429 29 HOH HOH . 
H 6 HOH A 30 430 30 HOH HOH . 
H 6 HOH A 31 431 31 HOH HOH . 
H 6 HOH A 32 432 32 HOH HOH . 
H 6 HOH A 33 433 33 HOH HOH . 
H 6 HOH A 34 434 34 HOH HOH . 
H 6 HOH A 35 435 35 HOH HOH . 
H 6 HOH A 36 436 36 HOH HOH . 
H 6 HOH A 37 437 37 HOH HOH . 
H 6 HOH A 38 438 38 HOH HOH . 
H 6 HOH A 39 439 39 HOH HOH . 
H 6 HOH A 40 440 40 HOH HOH . 
H 6 HOH A 41 441 41 HOH HOH . 
H 6 HOH A 42 442 42 HOH HOH . 
H 6 HOH A 43 443 43 HOH HOH . 
H 6 HOH A 44 444 44 HOH HOH . 
H 6 HOH A 45 445 45 HOH HOH . 
H 6 HOH A 46 446 46 HOH HOH . 
H 6 HOH A 47 447 47 HOH HOH . 
H 6 HOH A 48 448 48 HOH HOH . 
H 6 HOH A 49 449 49 HOH HOH . 
H 6 HOH A 50 450 50 HOH HOH . 
H 6 HOH A 51 451 51 HOH HOH . 
H 6 HOH A 52 452 52 HOH HOH . 
H 6 HOH A 53 453 53 HOH HOH . 
H 6 HOH A 54 454 54 HOH HOH . 
H 6 HOH A 55 455 55 HOH HOH . 
H 6 HOH A 56 456 56 HOH HOH . 
H 6 HOH A 57 457 57 HOH HOH . 
H 6 HOH A 58 458 58 HOH HOH . 
H 6 HOH A 59 459 59 HOH HOH . 
H 6 HOH A 60 460 60 HOH HOH . 
H 6 HOH A 61 461 61 HOH HOH . 
H 6 HOH A 62 462 62 HOH HOH . 
H 6 HOH A 63 463 63 HOH HOH . 
H 6 HOH A 64 464 64 HOH HOH . 
H 6 HOH A 65 465 65 HOH HOH . 
H 6 HOH A 66 466 66 HOH HOH . 
H 6 HOH A 67 467 67 HOH HOH . 
H 6 HOH A 68 468 68 HOH HOH . 
H 6 HOH A 69 469 69 HOH HOH . 
H 6 HOH A 70 470 70 HOH HOH . 
H 6 HOH A 71 471 71 HOH HOH . 
H 6 HOH A 72 472 72 HOH HOH . 
H 6 HOH A 73 473 73 HOH HOH . 
H 6 HOH A 74 474 74 HOH HOH . 
H 6 HOH A 75 475 75 HOH HOH . 
H 6 HOH A 76 476 76 HOH HOH . 
H 6 HOH A 77 477 77 HOH HOH . 
H 6 HOH A 78 478 78 HOH HOH . 
H 6 HOH A 79 479 79 HOH HOH . 
H 6 HOH A 80 480 80 HOH HOH . 
H 6 HOH A 81 481 81 HOH HOH . 
H 6 HOH A 82 482 82 HOH HOH . 
H 6 HOH A 83 483 83 HOH HOH . 
H 6 HOH A 84 484 84 HOH HOH . 
H 6 HOH A 85 485 85 HOH HOH . 
H 6 HOH A 86 486 86 HOH HOH . 
H 6 HOH A 87 487 87 HOH HOH . 
H 6 HOH A 88 488 88 HOH HOH . 
H 6 HOH A 89 489 89 HOH HOH . 
H 6 HOH A 90 490 90 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 YH5 . . . C 3 57.28 10.61 32.829 1 23.63 ? C1 YH5 302 A 1 
HETATM 2 O O1 YH5 . . . C 3 57.817 9.645 33.659 1 26.76 ? O1 YH5 302 A 1 
HETATM 3 N N1 YH5 . . . C 3 58.924 12.435 33.412 1 31.36 ? N1 YH5 302 A 1 
HETATM 4 S S1 YH5 . . . C 3 60.138 14.862 33.439 1 40.42 ? S1 YH5 302 A 1 
HETATM 5 C C10 YH5 . . . C 3 56.6 19.116 34.106 1 48.28 ? C10 YH5 302 A 1 
HETATM 6 C C11 YH5 . . . C 3 55.255 18.948 34.33 1 52.25 ? C11 YH5 302 A 1 
HETATM 7 C C12 YH5 . . . C 3 54.752 17.646 34.791 1 50.9 ? C12 YH5 302 A 1 
HETATM 8 C C13 YH5 . . . C 3 55.619 16.614 34.999 1 50.68 ? C13 YH5 302 A 1 
HETATM 9 C C14 YH5 . . . C 3 54.105 20.899 35.152 1 51.55 ? C14 YH5 302 A 1 
HETATM 10 N N2 YH5 . . . C 3 57.913 13.969 32.009 1 27.62 ? N2 YH5 302 A 1 
HETATM 11 C C2 YH5 . . . C 3 57.822 11.888 32.761 1 25.82 ? C2 YH5 302 A 1 
HETATM 12 O O2 YH5 . . . C 3 57.346 14.541 35.382 1 60.23 ? O2 YH5 302 A 1 
HETATM 13 N N3 YH5 . . . C 3 56.077 12.595 31.148 1 23.88 ? N3 YH5 302 A 1 
HETATM 14 C C3 YH5 . . . C 3 58.938 13.687 32.926 1 32.29 ? C3 YH5 302 A 1 
HETATM 15 O O3 YH5 . . . C 3 54.353 19.982 34.135 1 55.26 ? O3 YH5 302 A 1 
HETATM 16 C C4 YH5 . . . C 3 57.187 12.787 31.928 1 25.42 ? C4 YH5 302 A 1 
HETATM 17 N N4 YH5 . . . C 3 56.168 10.314 32.097 1 22.7 ? N4 YH5 302 A 1 
HETATM 18 C C5 YH5 . . . C 3 55.558 11.32 31.257 1 21.94 ? C5 YH5 302 A 1 
HETATM 19 N N5 YH5 . . . C 3 54.405 10.971 30.508 1 22.58 ? N5 YH5 302 A 1 
HETATM 20 C C6 YH5 . . . C 3 59.454 15.469 34.985 1 58.63 ? C6 YH5 302 A 1 
HETATM 21 C C7 YH5 . . . C 3 57.939 15.549 35.037 1 56.47 ? C7 YH5 302 A 1 
HETATM 22 C C8 YH5 . . . C 3 57.098 16.771 34.758 1 52.29 ? C8 YH5 302 A 1 
HETATM 23 C C9 YH5 . . . C 3 57.556 17.972 34.337 1 47.11 ? C9 YH5 302 A 1 
#
_model_server_stats.io_time_ms              69 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           311 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           23 
#