data_4M5S
#
_model_server_result.job_id            L6YLdbzdjBDfYFDYdU9_hw 
_model_server_result.datetime_utc      '2024-12-22 01:33:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4m5s 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":201}' 
#
_entry.id    4M5S 
#
_exptl.entry_id    4M5S 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              118.088 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SUCCINIC ACID' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4M5S 
_cell.length_a            35.38 
_cell.length_b            47.86 
_cell.length_c            122.84 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4M5S 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? tetrameric 4 author_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E 1 1,2 
A,B,C,D,E 2 1 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C4 H6 O4' 
_chem_comp.formula_weight    118.088 
_chem_comp.id                SIN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SUCCINIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 SIN doub 277 n n 
C1 O2 SIN sing 278 n n 
C1 C2 SIN sing 279 n n 
O2 HO2 SIN sing 280 n n 
C2 C3 SIN sing 281 n n 
C2 H21 SIN sing 282 n n 
C2 H22 SIN sing 283 n n 
C3 C4 SIN sing 284 n n 
C3 H31 SIN sing 285 n n 
C3 H32 SIN sing 286 n n 
C4 O3 SIN doub 287 n n 
C4 O4 SIN sing 288 n n 
O4 HO4 SIN sing 289 n n 
#
_atom_sites.entry_id                     4M5S 
_atom_sites.fract_transf_matrix[1][1]    0.028265 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.020894 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008141 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 SIN A 1 201 1 SIN SIN . 
D 4 HOH A 1 301 2 HOH HOH . 
D 4 HOH A 2 302 4 HOH HOH . 
D 4 HOH A 3 303 5 HOH HOH . 
D 4 HOH A 4 304 6 HOH HOH . 
D 4 HOH A 5 305 7 HOH HOH . 
D 4 HOH A 6 306 8 HOH HOH . 
D 4 HOH A 7 307 9 HOH HOH . 
D 4 HOH A 8 308 12 HOH HOH . 
D 4 HOH A 9 309 13 HOH HOH . 
D 4 HOH A 10 310 14 HOH HOH . 
D 4 HOH A 11 311 16 HOH HOH . 
D 4 HOH A 12 312 17 HOH HOH . 
D 4 HOH A 13 313 19 HOH HOH . 
D 4 HOH A 14 314 21 HOH HOH . 
D 4 HOH A 15 315 24 HOH HOH . 
D 4 HOH A 16 316 25 HOH HOH . 
D 4 HOH A 17 317 26 HOH HOH . 
D 4 HOH A 18 318 27 HOH HOH . 
D 4 HOH A 19 319 31 HOH HOH . 
D 4 HOH A 20 320 34 HOH HOH . 
D 4 HOH A 21 321 35 HOH HOH . 
D 4 HOH A 22 322 36 HOH HOH . 
D 4 HOH A 23 323 38 HOH HOH . 
D 4 HOH A 24 324 39 HOH HOH . 
D 4 HOH A 25 325 40 HOH HOH . 
D 4 HOH A 26 326 41 HOH HOH . 
D 4 HOH A 27 327 43 HOH HOH . 
D 4 HOH A 28 328 46 HOH HOH . 
D 4 HOH A 29 329 47 HOH HOH . 
D 4 HOH A 30 330 50 HOH HOH . 
D 4 HOH A 31 331 54 HOH HOH . 
D 4 HOH A 32 332 58 HOH HOH . 
D 4 HOH A 33 333 59 HOH HOH . 
D 4 HOH A 34 334 62 HOH HOH . 
D 4 HOH A 35 335 63 HOH HOH . 
D 4 HOH A 36 336 64 HOH HOH . 
D 4 HOH A 37 337 65 HOH HOH . 
D 4 HOH A 38 338 66 HOH HOH . 
D 4 HOH A 39 339 69 HOH HOH . 
D 4 HOH A 40 340 70 HOH HOH . 
D 4 HOH A 41 341 71 HOH HOH . 
D 4 HOH A 42 342 73 HOH HOH . 
D 4 HOH A 43 343 74 HOH HOH . 
D 4 HOH A 44 344 78 HOH HOH . 
D 4 HOH A 45 345 79 HOH HOH . 
D 4 HOH A 46 346 81 HOH HOH . 
D 4 HOH A 47 347 83 HOH HOH . 
D 4 HOH A 48 348 84 HOH HOH . 
D 4 HOH A 49 349 86 HOH HOH . 
D 4 HOH A 50 350 89 HOH HOH . 
D 4 HOH A 51 351 90 HOH HOH . 
D 4 HOH A 52 352 92 HOH HOH . 
D 4 HOH A 53 353 94 HOH HOH . 
D 4 HOH A 54 354 96 HOH HOH . 
D 4 HOH A 55 355 97 HOH HOH . 
D 4 HOH A 56 356 98 HOH HOH . 
D 4 HOH A 57 357 99 HOH HOH . 
D 4 HOH A 58 358 100 HOH HOH . 
E 4 HOH B 1 201 1 HOH HOH . 
E 4 HOH B 2 202 3 HOH HOH . 
E 4 HOH B 3 203 11 HOH HOH . 
E 4 HOH B 4 204 18 HOH HOH . 
E 4 HOH B 5 205 20 HOH HOH . 
E 4 HOH B 6 206 22 HOH HOH . 
E 4 HOH B 7 207 45 HOH HOH . 
E 4 HOH B 8 208 48 HOH HOH . 
E 4 HOH B 9 209 51 HOH HOH . 
E 4 HOH B 10 210 87 HOH HOH . 
E 4 HOH B 11 211 91 HOH HOH . 
E 4 HOH B 12 212 95 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 SIN . . . C 3 0.045 1.348 1.89 0.53 39.2 ? C1 SIN 201 A 1 
HETATM 2 O O1 SIN . . . C 3 1.246 0.995 1.992 0.53 35.25 ? O1 SIN 201 A 1 
HETATM 3 O O2 SIN . . . C 3 -0.62 1.57 2.937 0.53 47.31 ? O2 SIN 201 A 1 
HETATM 4 C C2 SIN . . . C 3 -0.564 1.492 0.514 0.53 32.12 ? C2 SIN 201 A 1 
HETATM 5 C C3 SIN . . . C 3 0.564 1.499 -0.514 0.53 32.11 ? C3 SIN 201 A 1 
HETATM 6 C C4 SIN . . . C 3 -0.044 1.343 -1.888 0.53 39.7 ? C4 SIN 201 A 1 
HETATM 7 O O3 SIN . . . C 3 0.619 1.568 -2.936 0.53 47.48 ? O3 SIN 201 A 1 
HETATM 8 O O4 SIN . . . C 3 -1.245 0.992 -1.988 0.53 35.25 ? O4 SIN 201 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           408 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           8 
#