data_4M6E # _model_server_result.job_id ovo-2qIkwRpcsdl7wpImYQ _model_server_result.datetime_utc '2024-11-26 10:27:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4m6e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":101}' # _entry.id 4M6E # _exptl.entry_id 4M6E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4M6E _cell.length_a 33.39 _cell.length_b 33.39 _cell.length_c 50.57 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4M6E _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_766 -x+2,-x+y+1,-z+1 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 50.085 28.916588 50.57 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C DPN 1 A DPN 1 1_555 A N PRO 2 A PRO 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? covale ? covale2 A C PHE 3 A PHE 3 1_555 A N DPN 4 A DPN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale3 A C DPN 4 A DPN 4 1_555 A N ASN 5 A ASN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale4 A C VAL 8 A VAL 8 1_555 A N ORN 9 A ORN 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale5 A C ORN 9 A ORN 9 1_555 A N LEU 10 A LEU 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale6 A C LEU 10 A LEU 10 1_555 A N DPN 1 A DPN 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4M6E _atom_sites.fract_transf_matrix[1][1] 0.029949 _atom_sites.fract_transf_matrix[1][2] 0.017291 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.034582 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019775 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MPD A 1 101 101 MPD MPD . C 3 MOH A 1 102 102 MOH MOH . D 3 MOH A 1 103 103 MOH MOH . E 3 MOH A 1 104 104 MOH MOH . F 4 HOH A 1 201 201 HOH HOH . F 4 HOH A 2 202 202 HOH HOH . F 4 HOH A 3 203 203 HOH HOH . F 4 HOH A 4 204 204 HOH HOH . F 4 HOH A 5 205 205 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . B 2 29.752 17.051 30.477 1 18.48 ? C1 MPD 101 A 1 HETATM 2 C C2 MPD . . . B 2 28.786 17.211 29.329 1 16.53 ? C2 MPD 101 A 1 HETATM 3 O O2 MPD . . . B 2 29.053 18.538 28.709 1 19.14 ? O2 MPD 101 A 1 HETATM 4 C CM MPD . . . B 2 27.398 17.178 29.789 1 13.68 ? CM MPD 101 A 1 HETATM 5 C C3 MPD . . . B 2 28.875 16.151 28.246 1 17.51 ? C3 MPD 101 A 1 HETATM 6 C C4 MPD . . . B 2 28.739 14.742 28.831 1 18.87 ? C4 MPD 101 A 1 HETATM 7 O O4 MPD . . . B 2 27.456 14.504 29.348 1 19.28 ? O4 MPD 101 A 1 HETATM 8 C C5 MPD . . . B 2 28.788 13.72 27.748 1 19.54 ? C5 MPD 101 A 1 HETATM 9 H H11 MPD . . . B 2 30.759 16.906 30.085 1 22.17 ? H11 MPD 101 A 1 HETATM 10 H H12 MPD . . . B 2 29.465 16.186 31.074 1 22.17 ? H12 MPD 101 A 1 HETATM 11 H H13 MPD . . . B 2 29.729 17.946 31.098 1 22.17 ? H13 MPD 101 A 1 HETATM 12 H HO2 MPD . . . B 2 29.223 18.422 27.751 1 22.97 ? HO2 MPD 101 A 1 HETATM 13 H HM1 MPD . . . B 2 26.744 16.931 28.952 1 16.41 ? HM1 MPD 101 A 1 HETATM 14 H HM2 MPD . . . B 2 27.291 16.424 30.568 1 16.41 ? HM2 MPD 101 A 1 HETATM 15 H HM3 MPD . . . B 2 27.124 18.154 30.188 1 16.41 ? HM3 MPD 101 A 1 HETATM 16 H H31 MPD . . . B 2 29.832 16.239 27.732 1 21.01 ? H31 MPD 101 A 1 HETATM 17 H H32 MPD . . . B 2 28.086 16.316 27.512 1 21.01 ? H32 MPD 101 A 1 HETATM 18 H H4 MPD . . . B 2 29.515 14.552 29.572 1 22.65 ? H4 MPD 101 A 1 HETATM 19 H HO4 MPD . . . B 2 27.473 13.701 29.91 1 23.14 ? HO4 MPD 101 A 1 HETATM 20 H H51 MPD . . . B 2 27.851 13.163 27.731 1 23.44 ? H51 MPD 101 A 1 HETATM 21 H H52 MPD . . . B 2 28.935 14.215 26.788 1 23.44 ? H52 MPD 101 A 1 HETATM 22 H H53 MPD . . . B 2 29.615 13.034 27.933 1 23.44 ? H53 MPD 101 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 245 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 22 #