data_4M6K
#
_model_server_result.job_id            9Rv656gnjdJIrMWAwZdSrw 
_model_server_result.datetime_utc      '2024-11-22 12:57:22' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4m6k 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":203}' 
#
_entry.id    4M6K 
#
_exptl.entry_id    4M6K 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4M6K 
_cell.length_a            68.213 
_cell.length_b            68.213 
_cell.length_c            160.163 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4M6K 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        182 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 63 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 182 n n 
C1 C2 GOL sing 183 n n 
C1 H11 GOL sing 184 n n 
C1 H12 GOL sing 185 n n 
O1 HO1 GOL sing 186 n n 
C2 O2 GOL sing 187 n n 
C2 C3 GOL sing 188 n n 
C2 H2 GOL sing 189 n n 
O2 HO2 GOL sing 190 n n 
C3 O3 GOL sing 191 n n 
C3 H31 GOL sing 192 n n 
C3 H32 GOL sing 193 n n 
O3 HO3 GOL sing 194 n n 
#
_atom_sites.entry_id                     4M6K 
_atom_sites.fract_transf_matrix[1][1]    0.01466 
_atom_sites.fract_transf_matrix[1][2]    0.008464 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016928 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006244 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 FOL A 1 201 1 FOL FOL . 
C 3 NAP A 1 202 1 NAP NAP . 
D 4 GOL A 1 203 3968 GOL GOL . 
E 5 HOH A 1 301 1 HOH HOH . 
E 5 HOH A 2 302 2 HOH HOH . 
E 5 HOH A 3 303 3 HOH HOH . 
E 5 HOH A 4 304 4 HOH HOH . 
E 5 HOH A 5 305 5 HOH HOH . 
E 5 HOH A 6 306 6 HOH HOH . 
E 5 HOH A 7 307 7 HOH HOH . 
E 5 HOH A 8 308 8 HOH HOH . 
E 5 HOH A 9 309 9 HOH HOH . 
E 5 HOH A 10 310 10 HOH HOH . 
E 5 HOH A 11 311 11 HOH HOH . 
E 5 HOH A 12 312 12 HOH HOH . 
E 5 HOH A 13 313 13 HOH HOH . 
E 5 HOH A 14 314 14 HOH HOH . 
E 5 HOH A 15 315 15 HOH HOH . 
E 5 HOH A 16 316 16 HOH HOH . 
E 5 HOH A 17 317 17 HOH HOH . 
E 5 HOH A 18 318 18 HOH HOH . 
E 5 HOH A 19 319 19 HOH HOH . 
E 5 HOH A 20 320 20 HOH HOH . 
E 5 HOH A 21 321 21 HOH HOH . 
E 5 HOH A 22 322 22 HOH HOH . 
E 5 HOH A 23 323 23 HOH HOH . 
E 5 HOH A 24 324 24 HOH HOH . 
E 5 HOH A 25 325 25 HOH HOH . 
E 5 HOH A 26 326 26 HOH HOH . 
E 5 HOH A 27 327 27 HOH HOH . 
E 5 HOH A 28 328 28 HOH HOH . 
E 5 HOH A 29 329 29 HOH HOH . 
E 5 HOH A 30 330 31 HOH HOH . 
E 5 HOH A 31 331 32 HOH HOH . 
E 5 HOH A 32 332 33 HOH HOH . 
E 5 HOH A 33 333 34 HOH HOH . 
E 5 HOH A 34 334 35 HOH HOH . 
E 5 HOH A 35 335 36 HOH HOH . 
E 5 HOH A 36 336 37 HOH HOH . 
E 5 HOH A 37 337 38 HOH HOH . 
E 5 HOH A 38 338 39 HOH HOH . 
E 5 HOH A 39 339 40 HOH HOH . 
E 5 HOH A 40 340 41 HOH HOH . 
E 5 HOH A 41 341 42 HOH HOH . 
E 5 HOH A 42 342 43 HOH HOH . 
E 5 HOH A 43 343 44 HOH HOH . 
E 5 HOH A 44 344 45 HOH HOH . 
E 5 HOH A 45 345 47 HOH HOH . 
E 5 HOH A 46 346 48 HOH HOH . 
E 5 HOH A 47 347 49 HOH HOH . 
E 5 HOH A 48 348 50 HOH HOH . 
E 5 HOH A 49 349 51 HOH HOH . 
E 5 HOH A 50 350 52 HOH HOH . 
E 5 HOH A 51 351 53 HOH HOH . 
E 5 HOH A 52 352 54 HOH HOH . 
E 5 HOH A 53 353 55 HOH HOH . 
E 5 HOH A 54 354 56 HOH HOH . 
E 5 HOH A 55 355 58 HOH HOH . 
E 5 HOH A 56 356 59 HOH HOH . 
E 5 HOH A 57 357 60 HOH HOH . 
E 5 HOH A 58 358 61 HOH HOH . 
E 5 HOH A 59 359 62 HOH HOH . 
E 5 HOH A 60 360 63 HOH HOH . 
E 5 HOH A 61 361 64 HOH HOH . 
E 5 HOH A 62 362 65 HOH HOH . 
E 5 HOH A 63 363 66 HOH HOH . 
E 5 HOH A 64 364 67 HOH HOH . 
E 5 HOH A 65 365 68 HOH HOH . 
E 5 HOH A 66 366 69 HOH HOH . 
E 5 HOH A 67 367 70 HOH HOH . 
E 5 HOH A 68 368 71 HOH HOH . 
E 5 HOH A 69 369 72 HOH HOH . 
E 5 HOH A 70 370 73 HOH HOH . 
E 5 HOH A 71 371 74 HOH HOH . 
E 5 HOH A 72 372 75 HOH HOH . 
E 5 HOH A 73 373 76 HOH HOH . 
E 5 HOH A 74 374 77 HOH HOH . 
E 5 HOH A 75 375 78 HOH HOH . 
E 5 HOH A 76 376 79 HOH HOH . 
E 5 HOH A 77 377 80 HOH HOH . 
E 5 HOH A 78 378 81 HOH HOH . 
E 5 HOH A 79 379 82 HOH HOH . 
E 5 HOH A 80 380 83 HOH HOH . 
E 5 HOH A 81 381 84 HOH HOH . 
E 5 HOH A 82 382 85 HOH HOH . 
E 5 HOH A 83 383 86 HOH HOH . 
E 5 HOH A 84 384 87 HOH HOH . 
E 5 HOH A 85 385 88 HOH HOH . 
E 5 HOH A 86 386 89 HOH HOH . 
E 5 HOH A 87 387 90 HOH HOH . 
E 5 HOH A 88 388 91 HOH HOH . 
E 5 HOH A 89 389 92 HOH HOH . 
E 5 HOH A 90 390 93 HOH HOH . 
E 5 HOH A 91 391 94 HOH HOH . 
E 5 HOH A 92 392 95 HOH HOH . 
E 5 HOH A 93 393 96 HOH HOH . 
E 5 HOH A 94 394 97 HOH HOH . 
E 5 HOH A 95 395 100 HOH HOH . 
E 5 HOH A 96 396 101 HOH HOH . 
E 5 HOH A 97 397 102 HOH HOH . 
E 5 HOH A 98 398 103 HOH HOH . 
E 5 HOH A 99 399 104 HOH HOH . 
E 5 HOH A 100 400 105 HOH HOH . 
E 5 HOH A 101 401 106 HOH HOH . 
E 5 HOH A 102 402 108 HOH HOH . 
E 5 HOH A 103 403 110 HOH HOH . 
E 5 HOH A 104 404 111 HOH HOH . 
E 5 HOH A 105 405 112 HOH HOH . 
E 5 HOH A 106 406 113 HOH HOH . 
E 5 HOH A 107 407 114 HOH HOH . 
E 5 HOH A 108 408 115 HOH HOH . 
E 5 HOH A 109 409 116 HOH HOH . 
E 5 HOH A 110 410 117 HOH HOH . 
E 5 HOH A 111 411 118 HOH HOH . 
E 5 HOH A 112 412 119 HOH HOH . 
E 5 HOH A 113 413 120 HOH HOH . 
E 5 HOH A 114 414 121 HOH HOH . 
E 5 HOH A 115 415 122 HOH HOH . 
E 5 HOH A 116 416 123 HOH HOH . 
E 5 HOH A 117 417 124 HOH HOH . 
E 5 HOH A 118 418 125 HOH HOH . 
E 5 HOH A 119 419 126 HOH HOH . 
E 5 HOH A 120 420 127 HOH HOH . 
E 5 HOH A 121 421 128 HOH HOH . 
E 5 HOH A 122 422 130 HOH HOH . 
E 5 HOH A 123 423 132 HOH HOH . 
E 5 HOH A 124 424 133 HOH HOH . 
E 5 HOH A 125 425 134 HOH HOH . 
E 5 HOH A 126 426 135 HOH HOH . 
E 5 HOH A 127 427 136 HOH HOH . 
E 5 HOH A 128 428 137 HOH HOH . 
E 5 HOH A 129 429 138 HOH HOH . 
E 5 HOH A 130 430 139 HOH HOH . 
E 5 HOH A 131 431 140 HOH HOH . 
E 5 HOH A 132 432 141 HOH HOH . 
E 5 HOH A 133 433 142 HOH HOH . 
E 5 HOH A 134 434 143 HOH HOH . 
E 5 HOH A 135 435 144 HOH HOH . 
E 5 HOH A 136 436 145 HOH HOH . 
E 5 HOH A 137 437 146 HOH HOH . 
E 5 HOH A 138 438 147 HOH HOH . 
E 5 HOH A 139 439 148 HOH HOH . 
E 5 HOH A 140 440 149 HOH HOH . 
E 5 HOH A 141 441 150 HOH HOH . 
E 5 HOH A 142 442 151 HOH HOH . 
E 5 HOH A 143 443 152 HOH HOH . 
E 5 HOH A 144 444 153 HOH HOH . 
E 5 HOH A 145 445 154 HOH HOH . 
E 5 HOH A 146 446 155 HOH HOH . 
E 5 HOH A 147 447 157 HOH HOH . 
E 5 HOH A 148 448 158 HOH HOH . 
E 5 HOH A 149 449 159 HOH HOH . 
E 5 HOH A 150 450 161 HOH HOH . 
E 5 HOH A 151 451 163 HOH HOH . 
E 5 HOH A 152 452 164 HOH HOH . 
E 5 HOH A 153 453 165 HOH HOH . 
E 5 HOH A 154 454 166 HOH HOH . 
E 5 HOH A 155 455 167 HOH HOH . 
E 5 HOH A 156 456 168 HOH HOH . 
E 5 HOH A 157 457 169 HOH HOH . 
E 5 HOH A 158 458 170 HOH HOH . 
E 5 HOH A 159 459 171 HOH HOH . 
E 5 HOH A 160 460 172 HOH HOH . 
E 5 HOH A 161 461 173 HOH HOH . 
E 5 HOH A 162 462 174 HOH HOH . 
E 5 HOH A 163 463 175 HOH HOH . 
E 5 HOH A 164 464 176 HOH HOH . 
E 5 HOH A 165 465 177 HOH HOH . 
E 5 HOH A 166 466 178 HOH HOH . 
E 5 HOH A 167 467 179 HOH HOH . 
E 5 HOH A 168 468 181 HOH HOH . 
E 5 HOH A 169 469 183 HOH HOH . 
E 5 HOH A 170 470 184 HOH HOH . 
E 5 HOH A 171 471 185 HOH HOH . 
E 5 HOH A 172 472 186 HOH HOH . 
E 5 HOH A 173 473 188 HOH HOH . 
E 5 HOH A 174 474 189 HOH HOH . 
E 5 HOH A 175 475 191 HOH HOH . 
E 5 HOH A 176 476 193 HOH HOH . 
E 5 HOH A 177 477 194 HOH HOH . 
E 5 HOH A 178 478 196 HOH HOH . 
E 5 HOH A 179 479 199 HOH HOH . 
E 5 HOH A 180 480 200 HOH HOH . 
E 5 HOH A 181 481 201 HOH HOH . 
E 5 HOH A 182 482 203 HOH HOH . 
E 5 HOH A 183 483 204 HOH HOH . 
E 5 HOH A 184 484 207 HOH HOH . 
E 5 HOH A 185 485 208 HOH HOH . 
E 5 HOH A 186 486 210 HOH HOH . 
E 5 HOH A 187 487 214 HOH HOH . 
E 5 HOH A 188 488 215 HOH HOH . 
E 5 HOH A 189 489 216 HOH HOH . 
E 5 HOH A 190 490 219 HOH HOH . 
E 5 HOH A 191 491 220 HOH HOH . 
E 5 HOH A 192 492 229 HOH HOH . 
E 5 HOH A 193 493 230 HOH HOH . 
E 5 HOH A 194 494 238 HOH HOH . 
E 5 HOH A 195 495 254 HOH HOH . 
E 5 HOH A 196 496 259 HOH HOH . 
E 5 HOH A 197 497 260 HOH HOH . 
E 5 HOH A 198 498 261 HOH HOH . 
E 5 HOH A 199 499 262 HOH HOH . 
E 5 HOH A 200 500 263 HOH HOH . 
E 5 HOH A 201 501 266 HOH HOH . 
E 5 HOH A 202 502 267 HOH HOH . 
E 5 HOH A 203 503 268 HOH HOH . 
E 5 HOH A 204 504 269 HOH HOH . 
E 5 HOH A 205 505 270 HOH HOH . 
E 5 HOH A 206 506 271 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 4 24.751 16.892 -21.221 1 29.9 ? C1 GOL 203 A 1 
HETATM 2 O O1 GOL . . . D 4 25.302 17.701 -20.2 1 32.08 ? O1 GOL 203 A 1 
HETATM 3 C C2 GOL . . . D 4 23.565 17.643 -21.816 1 28.38 ? C2 GOL 203 A 1 
HETATM 4 O O2 GOL . . . D 4 24.034 18.836 -22.387 1 26.83 ? O2 GOL 203 A 1 
HETATM 5 C C3 GOL . . . D 4 22.847 16.794 -22.861 1 28.61 ? C3 GOL 203 A 1 
HETATM 6 O O3 GOL . . . D 4 23.739 16.314 -23.855 1 25.9 ? O3 GOL 203 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           285 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           6 
#