data_4M6L
#
_model_server_result.job_id            Syvm49Nv0SAALbHch_16yQ 
_model_server_result.datetime_utc      '2024-11-22 13:29:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4m6l 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":201}' 
#
_entry.id    4M6L 
#
_exptl.entry_id    4M6L 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              443.453 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'N-(4-{2-[(6S)-2-amino-4-oxo-1,4,5,6,7,8-hexahydropyrido[2,3-d]pyrimidin-6-yl]ethyl}benzoyl)-L-glutamic acid' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4M6L 
_cell.length_a            67.781 
_cell.length_b            67.781 
_cell.length_c            160.408 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4M6L 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        182 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 63 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C21 H25 N5 O6' 
_chem_comp.formula_weight    443.453 
_chem_comp.id                21V 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'N-(4-{2-[(6S)-2-amino-4-oxo-1,4,5,6,7,8-hexahydropyrido[2,3-d]pyrimidin-6-yl]ethyl}benzoyl)-L-glutamic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '5,10-dideazatetrahydrofolic acid' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
NA2 C2 21V sing 1 n n 
N3 C2 21V doub 2 n n 
N3 C4 21V sing 3 n n 
O4 C4 21V doub 4 n n 
C2 N1 21V sing 5 n n 
C4 C4A 21V sing 6 n n 
N1 C8A 21V sing 7 n n 
C4A C8A 21V doub 8 n n 
C4A C5 21V sing 9 n n 
C8A N8 21V sing 10 n n 
C5 C6 21V sing 11 n n 
N8 C7 21V sing 12 n n 
OE1 CD 21V doub 13 n n 
OE2 CD 21V sing 14 n n 
CD CG 21V sing 15 n n 
C6 C7 21V sing 16 n n 
C6 C9 21V sing 17 n n 
C9 C10 21V sing 18 n n 
CG CB 21V sing 19 n n 
C13 C12 21V doub 20 n y 
C13 C14 21V sing 21 n y 
CB CA 21V sing 22 n n 
C12 C11 21V sing 23 n y 
C10 C14 21V sing 24 n n 
C14 C15 21V doub 25 n y 
C11 C 21V sing 26 n n 
C11 C16 21V doub 27 n y 
C O 21V doub 28 n n 
C N 21V sing 29 n n 
C15 C16 21V sing 30 n y 
N CA 21V sing 31 n n 
CA CT 21V sing 32 n n 
O1 CT 21V doub 33 n n 
CT O2 21V sing 34 n n 
OE2 H1 21V sing 35 n n 
CG H2 21V sing 36 n n 
CG H3 21V sing 37 n n 
CB H4 21V sing 38 n n 
CB H5 21V sing 39 n n 
CA H6 21V sing 40 n n 
O2 H7 21V sing 41 n n 
N H8 21V sing 42 n n 
C12 H9 21V sing 43 n n 
C13 H10 21V sing 44 n n 
C16 H11 21V sing 45 n n 
C15 H12 21V sing 46 n n 
C10 H13 21V sing 47 n n 
C10 H14 21V sing 48 n n 
C9 H15 21V sing 49 n n 
C9 H16 21V sing 50 n n 
C6 H17 21V sing 51 n n 
C7 H18 21V sing 52 n n 
C7 H19 21V sing 53 n n 
C5 H20 21V sing 54 n n 
C5 H21 21V sing 55 n n 
NA2 H24 21V sing 56 n n 
NA2 H25 21V sing 57 n n 
N8 H26 21V sing 58 n n 
N1 H22 21V sing 59 n n 
#
_atom_sites.entry_id                     4M6L 
_atom_sites.fract_transf_matrix[1][1]    0.014753 
_atom_sites.fract_transf_matrix[1][2]    0.008518 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017036 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006234 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 21V A 1 201 1 21V DDF . 
C 3 NAP A 1 202 1 NAP NAP . 
D 4 DTT A 1 203 3236 DTT DTT . 
E 5 SO4 A 1 204 1 SO4 SO4 . 
F 6 HOH A 1 301 1 HOH HOH . 
F 6 HOH A 2 302 2 HOH HOH . 
F 6 HOH A 3 303 3 HOH HOH . 
F 6 HOH A 4 304 4 HOH HOH . 
F 6 HOH A 5 305 5 HOH HOH . 
F 6 HOH A 6 306 6 HOH HOH . 
F 6 HOH A 7 307 7 HOH HOH . 
F 6 HOH A 8 308 8 HOH HOH . 
F 6 HOH A 9 309 9 HOH HOH . 
F 6 HOH A 10 310 10 HOH HOH . 
F 6 HOH A 11 311 11 HOH HOH . 
F 6 HOH A 12 312 12 HOH HOH . 
F 6 HOH A 13 313 13 HOH HOH . 
F 6 HOH A 14 314 14 HOH HOH . 
F 6 HOH A 15 315 15 HOH HOH . 
F 6 HOH A 16 316 16 HOH HOH . 
F 6 HOH A 17 317 17 HOH HOH . 
F 6 HOH A 18 318 18 HOH HOH . 
F 6 HOH A 19 319 19 HOH HOH . 
F 6 HOH A 20 320 20 HOH HOH . 
F 6 HOH A 21 321 21 HOH HOH . 
F 6 HOH A 22 322 22 HOH HOH . 
F 6 HOH A 23 323 23 HOH HOH . 
F 6 HOH A 24 324 24 HOH HOH . 
F 6 HOH A 25 325 25 HOH HOH . 
F 6 HOH A 26 326 26 HOH HOH . 
F 6 HOH A 27 327 27 HOH HOH . 
F 6 HOH A 28 328 28 HOH HOH . 
F 6 HOH A 29 329 29 HOH HOH . 
F 6 HOH A 30 330 30 HOH HOH . 
F 6 HOH A 31 331 31 HOH HOH . 
F 6 HOH A 32 332 32 HOH HOH . 
F 6 HOH A 33 333 33 HOH HOH . 
F 6 HOH A 34 334 34 HOH HOH . 
F 6 HOH A 35 335 35 HOH HOH . 
F 6 HOH A 36 336 36 HOH HOH . 
F 6 HOH A 37 337 37 HOH HOH . 
F 6 HOH A 38 338 38 HOH HOH . 
F 6 HOH A 39 339 39 HOH HOH . 
F 6 HOH A 40 340 40 HOH HOH . 
F 6 HOH A 41 341 41 HOH HOH . 
F 6 HOH A 42 342 42 HOH HOH . 
F 6 HOH A 43 343 43 HOH HOH . 
F 6 HOH A 44 344 44 HOH HOH . 
F 6 HOH A 45 345 45 HOH HOH . 
F 6 HOH A 46 346 46 HOH HOH . 
F 6 HOH A 47 347 47 HOH HOH . 
F 6 HOH A 48 348 48 HOH HOH . 
F 6 HOH A 49 349 49 HOH HOH . 
F 6 HOH A 50 350 50 HOH HOH . 
F 6 HOH A 51 351 51 HOH HOH . 
F 6 HOH A 52 352 52 HOH HOH . 
F 6 HOH A 53 353 53 HOH HOH . 
F 6 HOH A 54 354 54 HOH HOH . 
F 6 HOH A 55 355 55 HOH HOH . 
F 6 HOH A 56 356 56 HOH HOH . 
F 6 HOH A 57 357 57 HOH HOH . 
F 6 HOH A 58 358 58 HOH HOH . 
F 6 HOH A 59 359 59 HOH HOH . 
F 6 HOH A 60 360 60 HOH HOH . 
F 6 HOH A 61 361 61 HOH HOH . 
F 6 HOH A 62 362 62 HOH HOH . 
F 6 HOH A 63 363 63 HOH HOH . 
F 6 HOH A 64 364 64 HOH HOH . 
F 6 HOH A 65 365 65 HOH HOH . 
F 6 HOH A 66 366 66 HOH HOH . 
F 6 HOH A 67 367 67 HOH HOH . 
F 6 HOH A 68 368 68 HOH HOH . 
F 6 HOH A 69 369 69 HOH HOH . 
F 6 HOH A 70 370 70 HOH HOH . 
F 6 HOH A 71 371 71 HOH HOH . 
F 6 HOH A 72 372 72 HOH HOH . 
F 6 HOH A 73 373 73 HOH HOH . 
F 6 HOH A 74 374 74 HOH HOH . 
F 6 HOH A 75 375 75 HOH HOH . 
F 6 HOH A 76 376 76 HOH HOH . 
F 6 HOH A 77 377 77 HOH HOH . 
F 6 HOH A 78 378 78 HOH HOH . 
F 6 HOH A 79 379 79 HOH HOH . 
F 6 HOH A 80 380 80 HOH HOH . 
F 6 HOH A 81 381 81 HOH HOH . 
F 6 HOH A 82 382 82 HOH HOH . 
F 6 HOH A 83 383 83 HOH HOH . 
F 6 HOH A 84 384 84 HOH HOH . 
F 6 HOH A 85 385 85 HOH HOH . 
F 6 HOH A 86 386 87 HOH HOH . 
F 6 HOH A 87 387 88 HOH HOH . 
F 6 HOH A 88 388 89 HOH HOH . 
F 6 HOH A 89 389 90 HOH HOH . 
F 6 HOH A 90 390 91 HOH HOH . 
F 6 HOH A 91 391 92 HOH HOH . 
F 6 HOH A 92 392 93 HOH HOH . 
F 6 HOH A 93 393 94 HOH HOH . 
F 6 HOH A 94 394 96 HOH HOH . 
F 6 HOH A 95 395 97 HOH HOH . 
F 6 HOH A 96 396 98 HOH HOH . 
F 6 HOH A 97 397 99 HOH HOH . 
F 6 HOH A 98 398 100 HOH HOH . 
F 6 HOH A 99 399 101 HOH HOH . 
F 6 HOH A 100 400 102 HOH HOH . 
F 6 HOH A 101 401 103 HOH HOH . 
F 6 HOH A 102 402 104 HOH HOH . 
F 6 HOH A 103 403 105 HOH HOH . 
F 6 HOH A 104 404 106 HOH HOH . 
F 6 HOH A 105 405 107 HOH HOH . 
F 6 HOH A 106 406 108 HOH HOH . 
F 6 HOH A 107 407 109 HOH HOH . 
F 6 HOH A 108 408 110 HOH HOH . 
F 6 HOH A 109 409 111 HOH HOH . 
F 6 HOH A 110 410 112 HOH HOH . 
F 6 HOH A 111 411 113 HOH HOH . 
F 6 HOH A 112 412 114 HOH HOH . 
F 6 HOH A 113 413 115 HOH HOH . 
F 6 HOH A 114 414 116 HOH HOH . 
F 6 HOH A 115 415 117 HOH HOH . 
F 6 HOH A 116 416 118 HOH HOH . 
F 6 HOH A 117 417 119 HOH HOH . 
F 6 HOH A 118 418 122 HOH HOH . 
F 6 HOH A 119 419 123 HOH HOH . 
F 6 HOH A 120 420 124 HOH HOH . 
F 6 HOH A 121 421 125 HOH HOH . 
F 6 HOH A 122 422 127 HOH HOH . 
F 6 HOH A 123 423 128 HOH HOH . 
F 6 HOH A 124 424 129 HOH HOH . 
F 6 HOH A 125 425 131 HOH HOH . 
F 6 HOH A 126 426 132 HOH HOH . 
F 6 HOH A 127 427 133 HOH HOH . 
F 6 HOH A 128 428 134 HOH HOH . 
F 6 HOH A 129 429 135 HOH HOH . 
F 6 HOH A 130 430 137 HOH HOH . 
F 6 HOH A 131 431 138 HOH HOH . 
F 6 HOH A 132 432 139 HOH HOH . 
F 6 HOH A 133 433 140 HOH HOH . 
F 6 HOH A 134 434 141 HOH HOH . 
F 6 HOH A 135 435 143 HOH HOH . 
F 6 HOH A 136 436 144 HOH HOH . 
F 6 HOH A 137 437 145 HOH HOH . 
F 6 HOH A 138 438 146 HOH HOH . 
F 6 HOH A 139 439 148 HOH HOH . 
F 6 HOH A 140 440 149 HOH HOH . 
F 6 HOH A 141 441 151 HOH HOH . 
F 6 HOH A 142 442 152 HOH HOH . 
F 6 HOH A 143 443 153 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O OE2 21V . . . B 2 16.871 4.847 -24.703 1 56.48 ? OE2 21V 201 A 1 
HETATM 2 C CD 21V . . . B 2 17.192 3.646 -24.553 1 53.03 ? CD 21V 201 A 1 
HETATM 3 O OE1 21V . . . B 2 18.313 3.205 -24.898 1 53.13 ? OE1 21V 201 A 1 
HETATM 4 C CG 21V . . . B 2 16.19 2.692 -23.933 1 48.28 ? CG 21V 201 A 1 
HETATM 5 C CB 21V . . . B 2 15.48 3.322 -22.737 1 43.8 ? CB 21V 201 A 1 
HETATM 6 C CA 21V . . . B 2 16.337 3.317 -21.472 1 39.5 ? CA 21V 201 A 1 
HETATM 7 C CT 21V . . . B 2 16.436 1.915 -20.919 1 37.78 ? CT 21V 201 A 1 
HETATM 8 O O1 21V . . . B 2 17.511 1.282 -21.073 1 34.16 ? O1 21V 201 A 1 
HETATM 9 O O2 21V . . . B 2 15.438 1.426 -20.333 1 38.92 ? O2 21V 201 A 1 
HETATM 10 N N 21V . . . B 2 17.653 3.881 -21.721 1 36.76 ? N 21V 201 A 1 
HETATM 11 C C 21V . . . B 2 17.907 5.181 -21.854 1 35.31 ? C 21V 201 A 1 
HETATM 12 O O 21V . . . B 2 17.04 6.042 -21.771 1 37.46 ? O 21V 201 A 1 
HETATM 13 C C11 21V . . . B 2 19.331 5.578 -22.084 1 32.03 ? C11 21V 201 A 1 
HETATM 14 C C12 21V . . . B 2 19.68 6.785 -22.71 1 30.39 ? C12 21V 201 A 1 
HETATM 15 C C13 21V . . . B 2 21.022 7.114 -22.879 1 28.77 ? C13 21V 201 A 1 
HETATM 16 C C16 21V . . . B 2 20.316 4.712 -21.638 1 30.68 ? C16 21V 201 A 1 
HETATM 17 C C15 21V . . . B 2 21.65 5.047 -21.816 1 30.59 ? C15 21V 201 A 1 
HETATM 18 C C14 21V . . . B 2 22.009 6.237 -22.442 1 29.06 ? C14 21V 201 A 1 
HETATM 19 C C10 21V . . . B 2 23.479 6.559 -22.597 1 28.5 ? C10 21V 201 A 1 
HETATM 20 C C9 21V . . . B 2 23.93 6.322 -24.019 1 27.98 ? C9 21V 201 A 1 
HETATM 21 C C6 21V . . . B 2 23.775 4.842 -24.324 1 26.5 ? C6 21V 201 A 1 
HETATM 22 C C7 21V . . . B 2 25.151 4.188 -24.276 1 25.48 ? C7 21V 201 A 1 
HETATM 23 N N8 21V . . . B 2 25.2 2.894 -24.947 1 23.26 ? N8 21V 201 A 1 
HETATM 24 C C5 21V . . . B 2 23.171 4.834 -25.706 1 26.6 ? C5 21V 201 A 1 
HETATM 25 C C4A 21V . . . B 2 23.349 3.483 -26.336 1 24.67 ? C4A 21V 201 A 1 
HETATM 26 C C4 21V . . . B 2 22.494 3.158 -27.348 1 25.64 ? C4 21V 201 A 1 
HETATM 27 O O4 21V . . . B 2 21.598 3.979 -27.715 1 27.17 ? O4 21V 201 A 1 
HETATM 28 C C8A 21V . . . B 2 24.333 2.584 -25.922 1 21.61 ? C8A 21V 201 A 1 
HETATM 29 N N1 21V . . . B 2 24.45 1.387 -26.557 1 18.93 ? N1 21V 201 A 1 
HETATM 30 C C2 21V . . . B 2 23.601 1.089 -27.557 1 19.5 ? C2 21V 201 A 1 
HETATM 31 N N3 21V . . . B 2 22.637 1.953 -27.944 1 22.56 ? N3 21V 201 A 1 
HETATM 32 N NA2 21V . . . B 2 23.69 -0.111 -28.167 1 18.67 ? NA2 21V 201 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           5 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           243 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           32 
#