data_4M6L # _model_server_result.job_id PkVcIaXDXjUq-RPFGZ118w _model_server_result.datetime_utc '2024-11-07 11:15:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4m6l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 4M6L # _exptl.entry_id 4M6L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 443.453 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'N-(4-{2-[(6S)-2-amino-4-oxo-1,4,5,6,7,8-hexahydropyrido[2,3-d]pyrimidin-6-yl]ethyl}benzoyl)-L-glutamic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4M6L _cell.length_a 67.781 _cell.length_b 67.781 _cell.length_c 160.408 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4M6L _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H25 N5 O6' _chem_comp.formula_weight 443.453 _chem_comp.id 21V _chem_comp.mon_nstd_flag . _chem_comp.name 'N-(4-{2-[(6S)-2-amino-4-oxo-1,4,5,6,7,8-hexahydropyrido[2,3-d]pyrimidin-6-yl]ethyl}benzoyl)-L-glutamic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '5,10-dideazatetrahydrofolic acid' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag NA2 C2 21V sing 1 n n N3 C2 21V doub 2 n n N3 C4 21V sing 3 n n O4 C4 21V doub 4 n n C2 N1 21V sing 5 n n C4 C4A 21V sing 6 n n N1 C8A 21V sing 7 n n C4A C8A 21V doub 8 n n C4A C5 21V sing 9 n n C8A N8 21V sing 10 n n C5 C6 21V sing 11 n n N8 C7 21V sing 12 n n OE1 CD 21V doub 13 n n OE2 CD 21V sing 14 n n CD CG 21V sing 15 n n C6 C7 21V sing 16 n n C6 C9 21V sing 17 n n C9 C10 21V sing 18 n n CG CB 21V sing 19 n n C13 C12 21V doub 20 n y C13 C14 21V sing 21 n y CB CA 21V sing 22 n n C12 C11 21V sing 23 n y C10 C14 21V sing 24 n n C14 C15 21V doub 25 n y C11 C 21V sing 26 n n C11 C16 21V doub 27 n y C O 21V doub 28 n n C N 21V sing 29 n n C15 C16 21V sing 30 n y N CA 21V sing 31 n n CA CT 21V sing 32 n n O1 CT 21V doub 33 n n CT O2 21V sing 34 n n OE2 H1 21V sing 35 n n CG H2 21V sing 36 n n CG H3 21V sing 37 n n CB H4 21V sing 38 n n CB H5 21V sing 39 n n CA H6 21V sing 40 n n O2 H7 21V sing 41 n n N H8 21V sing 42 n n C12 H9 21V sing 43 n n C13 H10 21V sing 44 n n C16 H11 21V sing 45 n n C15 H12 21V sing 46 n n C10 H13 21V sing 47 n n C10 H14 21V sing 48 n n C9 H15 21V sing 49 n n C9 H16 21V sing 50 n n C6 H17 21V sing 51 n n C7 H18 21V sing 52 n n C7 H19 21V sing 53 n n C5 H20 21V sing 54 n n C5 H21 21V sing 55 n n NA2 H24 21V sing 56 n n NA2 H25 21V sing 57 n n N8 H26 21V sing 58 n n N1 H22 21V sing 59 n n # _atom_sites.entry_id 4M6L _atom_sites.fract_transf_matrix[1][1] 0.014753 _atom_sites.fract_transf_matrix[1][2] 0.008518 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017036 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006234 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 21V A 1 201 1 21V DDF . C 3 NAP A 1 202 1 NAP NAP . D 4 DTT A 1 203 3236 DTT DTT . E 5 SO4 A 1 204 1 SO4 SO4 . F 6 HOH A 1 301 1 HOH HOH . F 6 HOH A 2 302 2 HOH HOH . F 6 HOH A 3 303 3 HOH HOH . F 6 HOH A 4 304 4 HOH HOH . F 6 HOH A 5 305 5 HOH HOH . F 6 HOH A 6 306 6 HOH HOH . F 6 HOH A 7 307 7 HOH HOH . F 6 HOH A 8 308 8 HOH HOH . F 6 HOH A 9 309 9 HOH HOH . F 6 HOH A 10 310 10 HOH HOH . F 6 HOH A 11 311 11 HOH HOH . F 6 HOH A 12 312 12 HOH HOH . F 6 HOH A 13 313 13 HOH HOH . F 6 HOH A 14 314 14 HOH HOH . F 6 HOH A 15 315 15 HOH HOH . F 6 HOH A 16 316 16 HOH HOH . F 6 HOH A 17 317 17 HOH HOH . F 6 HOH A 18 318 18 HOH HOH . F 6 HOH A 19 319 19 HOH HOH . F 6 HOH A 20 320 20 HOH HOH . F 6 HOH A 21 321 21 HOH HOH . F 6 HOH A 22 322 22 HOH HOH . F 6 HOH A 23 323 23 HOH HOH . F 6 HOH A 24 324 24 HOH HOH . F 6 HOH A 25 325 25 HOH HOH . F 6 HOH A 26 326 26 HOH HOH . F 6 HOH A 27 327 27 HOH HOH . F 6 HOH A 28 328 28 HOH HOH . F 6 HOH A 29 329 29 HOH HOH . F 6 HOH A 30 330 30 HOH HOH . F 6 HOH A 31 331 31 HOH HOH . F 6 HOH A 32 332 32 HOH HOH . F 6 HOH A 33 333 33 HOH HOH . F 6 HOH A 34 334 34 HOH HOH . F 6 HOH A 35 335 35 HOH HOH . F 6 HOH A 36 336 36 HOH HOH . F 6 HOH A 37 337 37 HOH HOH . F 6 HOH A 38 338 38 HOH HOH . F 6 HOH A 39 339 39 HOH HOH . F 6 HOH A 40 340 40 HOH HOH . F 6 HOH A 41 341 41 HOH HOH . F 6 HOH A 42 342 42 HOH HOH . F 6 HOH A 43 343 43 HOH HOH . F 6 HOH A 44 344 44 HOH HOH . F 6 HOH A 45 345 45 HOH HOH . F 6 HOH A 46 346 46 HOH HOH . F 6 HOH A 47 347 47 HOH HOH . F 6 HOH A 48 348 48 HOH HOH . F 6 HOH A 49 349 49 HOH HOH . F 6 HOH A 50 350 50 HOH HOH . F 6 HOH A 51 351 51 HOH HOH . F 6 HOH A 52 352 52 HOH HOH . F 6 HOH A 53 353 53 HOH HOH . F 6 HOH A 54 354 54 HOH HOH . F 6 HOH A 55 355 55 HOH HOH . F 6 HOH A 56 356 56 HOH HOH . F 6 HOH A 57 357 57 HOH HOH . F 6 HOH A 58 358 58 HOH HOH . F 6 HOH A 59 359 59 HOH HOH . F 6 HOH A 60 360 60 HOH HOH . F 6 HOH A 61 361 61 HOH HOH . F 6 HOH A 62 362 62 HOH HOH . F 6 HOH A 63 363 63 HOH HOH . F 6 HOH A 64 364 64 HOH HOH . F 6 HOH A 65 365 65 HOH HOH . F 6 HOH A 66 366 66 HOH HOH . F 6 HOH A 67 367 67 HOH HOH . F 6 HOH A 68 368 68 HOH HOH . F 6 HOH A 69 369 69 HOH HOH . F 6 HOH A 70 370 70 HOH HOH . F 6 HOH A 71 371 71 HOH HOH . F 6 HOH A 72 372 72 HOH HOH . F 6 HOH A 73 373 73 HOH HOH . F 6 HOH A 74 374 74 HOH HOH . F 6 HOH A 75 375 75 HOH HOH . F 6 HOH A 76 376 76 HOH HOH . F 6 HOH A 77 377 77 HOH HOH . F 6 HOH A 78 378 78 HOH HOH . F 6 HOH A 79 379 79 HOH HOH . F 6 HOH A 80 380 80 HOH HOH . F 6 HOH A 81 381 81 HOH HOH . F 6 HOH A 82 382 82 HOH HOH . F 6 HOH A 83 383 83 HOH HOH . F 6 HOH A 84 384 84 HOH HOH . F 6 HOH A 85 385 85 HOH HOH . F 6 HOH A 86 386 87 HOH HOH . F 6 HOH A 87 387 88 HOH HOH . F 6 HOH A 88 388 89 HOH HOH . F 6 HOH A 89 389 90 HOH HOH . F 6 HOH A 90 390 91 HOH HOH . F 6 HOH A 91 391 92 HOH HOH . F 6 HOH A 92 392 93 HOH HOH . F 6 HOH A 93 393 94 HOH HOH . F 6 HOH A 94 394 96 HOH HOH . F 6 HOH A 95 395 97 HOH HOH . F 6 HOH A 96 396 98 HOH HOH . F 6 HOH A 97 397 99 HOH HOH . F 6 HOH A 98 398 100 HOH HOH . F 6 HOH A 99 399 101 HOH HOH . F 6 HOH A 100 400 102 HOH HOH . F 6 HOH A 101 401 103 HOH HOH . F 6 HOH A 102 402 104 HOH HOH . F 6 HOH A 103 403 105 HOH HOH . F 6 HOH A 104 404 106 HOH HOH . F 6 HOH A 105 405 107 HOH HOH . F 6 HOH A 106 406 108 HOH HOH . F 6 HOH A 107 407 109 HOH HOH . F 6 HOH A 108 408 110 HOH HOH . F 6 HOH A 109 409 111 HOH HOH . F 6 HOH A 110 410 112 HOH HOH . F 6 HOH A 111 411 113 HOH HOH . F 6 HOH A 112 412 114 HOH HOH . F 6 HOH A 113 413 115 HOH HOH . F 6 HOH A 114 414 116 HOH HOH . F 6 HOH A 115 415 117 HOH HOH . F 6 HOH A 116 416 118 HOH HOH . F 6 HOH A 117 417 119 HOH HOH . F 6 HOH A 118 418 122 HOH HOH . F 6 HOH A 119 419 123 HOH HOH . F 6 HOH A 120 420 124 HOH HOH . F 6 HOH A 121 421 125 HOH HOH . F 6 HOH A 122 422 127 HOH HOH . F 6 HOH A 123 423 128 HOH HOH . F 6 HOH A 124 424 129 HOH HOH . F 6 HOH A 125 425 131 HOH HOH . F 6 HOH A 126 426 132 HOH HOH . F 6 HOH A 127 427 133 HOH HOH . F 6 HOH A 128 428 134 HOH HOH . F 6 HOH A 129 429 135 HOH HOH . F 6 HOH A 130 430 137 HOH HOH . F 6 HOH A 131 431 138 HOH HOH . F 6 HOH A 132 432 139 HOH HOH . F 6 HOH A 133 433 140 HOH HOH . F 6 HOH A 134 434 141 HOH HOH . F 6 HOH A 135 435 143 HOH HOH . F 6 HOH A 136 436 144 HOH HOH . F 6 HOH A 137 437 145 HOH HOH . F 6 HOH A 138 438 146 HOH HOH . F 6 HOH A 139 439 148 HOH HOH . F 6 HOH A 140 440 149 HOH HOH . F 6 HOH A 141 441 151 HOH HOH . F 6 HOH A 142 442 152 HOH HOH . F 6 HOH A 143 443 153 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OE2 21V . . . B 2 16.871 4.847 -24.703 1 56.48 ? OE2 21V 201 A 1 HETATM 2 C CD 21V . . . B 2 17.192 3.646 -24.553 1 53.03 ? CD 21V 201 A 1 HETATM 3 O OE1 21V . . . B 2 18.313 3.205 -24.898 1 53.13 ? OE1 21V 201 A 1 HETATM 4 C CG 21V . . . B 2 16.19 2.692 -23.933 1 48.28 ? CG 21V 201 A 1 HETATM 5 C CB 21V . . . B 2 15.48 3.322 -22.737 1 43.8 ? CB 21V 201 A 1 HETATM 6 C CA 21V . . . B 2 16.337 3.317 -21.472 1 39.5 ? CA 21V 201 A 1 HETATM 7 C CT 21V . . . B 2 16.436 1.915 -20.919 1 37.78 ? CT 21V 201 A 1 HETATM 8 O O1 21V . . . B 2 17.511 1.282 -21.073 1 34.16 ? O1 21V 201 A 1 HETATM 9 O O2 21V . . . B 2 15.438 1.426 -20.333 1 38.92 ? O2 21V 201 A 1 HETATM 10 N N 21V . . . B 2 17.653 3.881 -21.721 1 36.76 ? N 21V 201 A 1 HETATM 11 C C 21V . . . B 2 17.907 5.181 -21.854 1 35.31 ? C 21V 201 A 1 HETATM 12 O O 21V . . . B 2 17.04 6.042 -21.771 1 37.46 ? O 21V 201 A 1 HETATM 13 C C11 21V . . . B 2 19.331 5.578 -22.084 1 32.03 ? C11 21V 201 A 1 HETATM 14 C C12 21V . . . B 2 19.68 6.785 -22.71 1 30.39 ? C12 21V 201 A 1 HETATM 15 C C13 21V . . . B 2 21.022 7.114 -22.879 1 28.77 ? C13 21V 201 A 1 HETATM 16 C C16 21V . . . B 2 20.316 4.712 -21.638 1 30.68 ? C16 21V 201 A 1 HETATM 17 C C15 21V . . . B 2 21.65 5.047 -21.816 1 30.59 ? C15 21V 201 A 1 HETATM 18 C C14 21V . . . B 2 22.009 6.237 -22.442 1 29.06 ? C14 21V 201 A 1 HETATM 19 C C10 21V . . . B 2 23.479 6.559 -22.597 1 28.5 ? C10 21V 201 A 1 HETATM 20 C C9 21V . . . B 2 23.93 6.322 -24.019 1 27.98 ? C9 21V 201 A 1 HETATM 21 C C6 21V . . . B 2 23.775 4.842 -24.324 1 26.5 ? C6 21V 201 A 1 HETATM 22 C C7 21V . . . B 2 25.151 4.188 -24.276 1 25.48 ? C7 21V 201 A 1 HETATM 23 N N8 21V . . . B 2 25.2 2.894 -24.947 1 23.26 ? N8 21V 201 A 1 HETATM 24 C C5 21V . . . B 2 23.171 4.834 -25.706 1 26.6 ? C5 21V 201 A 1 HETATM 25 C C4A 21V . . . B 2 23.349 3.483 -26.336 1 24.67 ? C4A 21V 201 A 1 HETATM 26 C C4 21V . . . B 2 22.494 3.158 -27.348 1 25.64 ? C4 21V 201 A 1 HETATM 27 O O4 21V . . . B 2 21.598 3.979 -27.715 1 27.17 ? O4 21V 201 A 1 HETATM 28 C C8A 21V . . . B 2 24.333 2.584 -25.922 1 21.61 ? C8A 21V 201 A 1 HETATM 29 N N1 21V . . . B 2 24.45 1.387 -26.557 1 18.93 ? N1 21V 201 A 1 HETATM 30 C C2 21V . . . B 2 23.601 1.089 -27.557 1 19.5 ? C2 21V 201 A 1 HETATM 31 N N3 21V . . . B 2 22.637 1.953 -27.944 1 22.56 ? N3 21V 201 A 1 HETATM 32 N NA2 21V . . . B 2 23.69 -0.111 -28.167 1 18.67 ? NA2 21V 201 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 256 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 32 #