data_4M6L # _model_server_result.job_id 1FXB4aVUUGRjw2knT3dCag _model_server_result.datetime_utc '2024-11-07 11:17:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4m6l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 4M6L # _exptl.entry_id 4M6L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4M6L _cell.length_a 67.781 _cell.length_b 67.781 _cell.length_c 160.408 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4M6L _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 313 n n PA O2A NAP sing 314 n n PA O5B NAP sing 315 n n PA O3 NAP sing 316 n n O2A HOA2 NAP sing 317 n n O5B C5B NAP sing 318 n n C5B C4B NAP sing 319 n n C5B H51A NAP sing 320 n n C5B H52A NAP sing 321 n n C4B O4B NAP sing 322 n n C4B C3B NAP sing 323 n n C4B H4B NAP sing 324 n n O4B C1B NAP sing 325 n n C3B O3B NAP sing 326 n n C3B C2B NAP sing 327 n n C3B H3B NAP sing 328 n n O3B HO3A NAP sing 329 n n C2B O2B NAP sing 330 n n C2B C1B NAP sing 331 n n C2B H2B NAP sing 332 n n O2B P2B NAP sing 333 n n C1B N9A NAP sing 334 n n C1B H1B NAP sing 335 n n N9A C8A NAP sing 336 n y N9A C4A NAP sing 337 n y C8A N7A NAP doub 338 n y C8A H8A NAP sing 339 n n N7A C5A NAP sing 340 n y C5A C6A NAP sing 341 n y C5A C4A NAP doub 342 n y C6A N6A NAP sing 343 n n C6A N1A NAP doub 344 n y N6A H61A NAP sing 345 n n N6A H62A NAP sing 346 n n N1A C2A NAP sing 347 n y C2A N3A NAP doub 348 n y C2A H2A NAP sing 349 n n N3A C4A NAP sing 350 n y O3 PN NAP sing 351 n n PN O1N NAP doub 352 n n PN O2N NAP sing 353 n n PN O5D NAP sing 354 n n O5D C5D NAP sing 355 n n C5D C4D NAP sing 356 n n C5D H51N NAP sing 357 n n C5D H52N NAP sing 358 n n C4D O4D NAP sing 359 n n C4D C3D NAP sing 360 n n C4D H4D NAP sing 361 n n O4D C1D NAP sing 362 n n C3D O3D NAP sing 363 n n C3D C2D NAP sing 364 n n C3D H3D NAP sing 365 n n O3D HO3N NAP sing 366 n n C2D O2D NAP sing 367 n n C2D C1D NAP sing 368 n n C2D H2D NAP sing 369 n n O2D HO2N NAP sing 370 n n C1D N1N NAP sing 371 n n C1D H1D NAP sing 372 n n N1N C2N NAP sing 373 n y N1N C6N NAP doub 374 n y C2N C3N NAP doub 375 n y C2N H2N NAP sing 376 n n C3N C7N NAP sing 377 n n C3N C4N NAP sing 378 n y C7N O7N NAP doub 379 n n C7N N7N NAP sing 380 n n N7N H71N NAP sing 381 n n N7N H72N NAP sing 382 n n C4N C5N NAP doub 383 n y C4N H4N NAP sing 384 n n C5N C6N NAP sing 385 n y C5N H5N NAP sing 386 n n C6N H6N NAP sing 387 n n P2B O1X NAP doub 388 n n P2B O2X NAP sing 389 n n P2B O3X NAP sing 390 n n O2X HOP2 NAP sing 391 n n O3X HOP3 NAP sing 392 n n # _atom_sites.entry_id 4M6L _atom_sites.fract_transf_matrix[1][1] 0.014753 _atom_sites.fract_transf_matrix[1][2] 0.008518 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017036 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006234 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 21V A 1 201 1 21V DDF . C 3 NAP A 1 202 1 NAP NAP . D 4 DTT A 1 203 3236 DTT DTT . E 5 SO4 A 1 204 1 SO4 SO4 . F 6 HOH A 1 301 1 HOH HOH . F 6 HOH A 2 302 2 HOH HOH . F 6 HOH A 3 303 3 HOH HOH . F 6 HOH A 4 304 4 HOH HOH . F 6 HOH A 5 305 5 HOH HOH . F 6 HOH A 6 306 6 HOH HOH . F 6 HOH A 7 307 7 HOH HOH . F 6 HOH A 8 308 8 HOH HOH . F 6 HOH A 9 309 9 HOH HOH . F 6 HOH A 10 310 10 HOH HOH . F 6 HOH A 11 311 11 HOH HOH . F 6 HOH A 12 312 12 HOH HOH . F 6 HOH A 13 313 13 HOH HOH . F 6 HOH A 14 314 14 HOH HOH . F 6 HOH A 15 315 15 HOH HOH . F 6 HOH A 16 316 16 HOH HOH . F 6 HOH A 17 317 17 HOH HOH . F 6 HOH A 18 318 18 HOH HOH . F 6 HOH A 19 319 19 HOH HOH . F 6 HOH A 20 320 20 HOH HOH . F 6 HOH A 21 321 21 HOH HOH . F 6 HOH A 22 322 22 HOH HOH . F 6 HOH A 23 323 23 HOH HOH . F 6 HOH A 24 324 24 HOH HOH . F 6 HOH A 25 325 25 HOH HOH . F 6 HOH A 26 326 26 HOH HOH . F 6 HOH A 27 327 27 HOH HOH . F 6 HOH A 28 328 28 HOH HOH . F 6 HOH A 29 329 29 HOH HOH . F 6 HOH A 30 330 30 HOH HOH . F 6 HOH A 31 331 31 HOH HOH . F 6 HOH A 32 332 32 HOH HOH . F 6 HOH A 33 333 33 HOH HOH . F 6 HOH A 34 334 34 HOH HOH . F 6 HOH A 35 335 35 HOH HOH . F 6 HOH A 36 336 36 HOH HOH . F 6 HOH A 37 337 37 HOH HOH . F 6 HOH A 38 338 38 HOH HOH . F 6 HOH A 39 339 39 HOH HOH . F 6 HOH A 40 340 40 HOH HOH . F 6 HOH A 41 341 41 HOH HOH . F 6 HOH A 42 342 42 HOH HOH . F 6 HOH A 43 343 43 HOH HOH . F 6 HOH A 44 344 44 HOH HOH . F 6 HOH A 45 345 45 HOH HOH . F 6 HOH A 46 346 46 HOH HOH . F 6 HOH A 47 347 47 HOH HOH . F 6 HOH A 48 348 48 HOH HOH . F 6 HOH A 49 349 49 HOH HOH . F 6 HOH A 50 350 50 HOH HOH . F 6 HOH A 51 351 51 HOH HOH . F 6 HOH A 52 352 52 HOH HOH . F 6 HOH A 53 353 53 HOH HOH . F 6 HOH A 54 354 54 HOH HOH . F 6 HOH A 55 355 55 HOH HOH . F 6 HOH A 56 356 56 HOH HOH . F 6 HOH A 57 357 57 HOH HOH . F 6 HOH A 58 358 58 HOH HOH . F 6 HOH A 59 359 59 HOH HOH . F 6 HOH A 60 360 60 HOH HOH . F 6 HOH A 61 361 61 HOH HOH . F 6 HOH A 62 362 62 HOH HOH . F 6 HOH A 63 363 63 HOH HOH . F 6 HOH A 64 364 64 HOH HOH . F 6 HOH A 65 365 65 HOH HOH . F 6 HOH A 66 366 66 HOH HOH . F 6 HOH A 67 367 67 HOH HOH . F 6 HOH A 68 368 68 HOH HOH . F 6 HOH A 69 369 69 HOH HOH . F 6 HOH A 70 370 70 HOH HOH . F 6 HOH A 71 371 71 HOH HOH . F 6 HOH A 72 372 72 HOH HOH . F 6 HOH A 73 373 73 HOH HOH . F 6 HOH A 74 374 74 HOH HOH . F 6 HOH A 75 375 75 HOH HOH . F 6 HOH A 76 376 76 HOH HOH . F 6 HOH A 77 377 77 HOH HOH . F 6 HOH A 78 378 78 HOH HOH . F 6 HOH A 79 379 79 HOH HOH . F 6 HOH A 80 380 80 HOH HOH . F 6 HOH A 81 381 81 HOH HOH . F 6 HOH A 82 382 82 HOH HOH . F 6 HOH A 83 383 83 HOH HOH . F 6 HOH A 84 384 84 HOH HOH . F 6 HOH A 85 385 85 HOH HOH . F 6 HOH A 86 386 87 HOH HOH . F 6 HOH A 87 387 88 HOH HOH . F 6 HOH A 88 388 89 HOH HOH . F 6 HOH A 89 389 90 HOH HOH . F 6 HOH A 90 390 91 HOH HOH . F 6 HOH A 91 391 92 HOH HOH . F 6 HOH A 92 392 93 HOH HOH . F 6 HOH A 93 393 94 HOH HOH . F 6 HOH A 94 394 96 HOH HOH . F 6 HOH A 95 395 97 HOH HOH . F 6 HOH A 96 396 98 HOH HOH . F 6 HOH A 97 397 99 HOH HOH . F 6 HOH A 98 398 100 HOH HOH . F 6 HOH A 99 399 101 HOH HOH . F 6 HOH A 100 400 102 HOH HOH . F 6 HOH A 101 401 103 HOH HOH . F 6 HOH A 102 402 104 HOH HOH . F 6 HOH A 103 403 105 HOH HOH . F 6 HOH A 104 404 106 HOH HOH . F 6 HOH A 105 405 107 HOH HOH . F 6 HOH A 106 406 108 HOH HOH . F 6 HOH A 107 407 109 HOH HOH . F 6 HOH A 108 408 110 HOH HOH . F 6 HOH A 109 409 111 HOH HOH . F 6 HOH A 110 410 112 HOH HOH . F 6 HOH A 111 411 113 HOH HOH . F 6 HOH A 112 412 114 HOH HOH . F 6 HOH A 113 413 115 HOH HOH . F 6 HOH A 114 414 116 HOH HOH . F 6 HOH A 115 415 117 HOH HOH . F 6 HOH A 116 416 118 HOH HOH . F 6 HOH A 117 417 119 HOH HOH . F 6 HOH A 118 418 122 HOH HOH . F 6 HOH A 119 419 123 HOH HOH . F 6 HOH A 120 420 124 HOH HOH . F 6 HOH A 121 421 125 HOH HOH . F 6 HOH A 122 422 127 HOH HOH . F 6 HOH A 123 423 128 HOH HOH . F 6 HOH A 124 424 129 HOH HOH . F 6 HOH A 125 425 131 HOH HOH . F 6 HOH A 126 426 132 HOH HOH . F 6 HOH A 127 427 133 HOH HOH . F 6 HOH A 128 428 134 HOH HOH . F 6 HOH A 129 429 135 HOH HOH . F 6 HOH A 130 430 137 HOH HOH . F 6 HOH A 131 431 138 HOH HOH . F 6 HOH A 132 432 139 HOH HOH . F 6 HOH A 133 433 140 HOH HOH . F 6 HOH A 134 434 141 HOH HOH . F 6 HOH A 135 435 143 HOH HOH . F 6 HOH A 136 436 144 HOH HOH . F 6 HOH A 137 437 145 HOH HOH . F 6 HOH A 138 438 146 HOH HOH . F 6 HOH A 139 439 148 HOH HOH . F 6 HOH A 140 440 149 HOH HOH . F 6 HOH A 141 441 151 HOH HOH . F 6 HOH A 142 442 152 HOH HOH . F 6 HOH A 143 443 153 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . C 3 30.974 10.834 -19.226 0.8 25.9 ? PA NAP 202 A 1 HETATM 2 O O1A NAP . . . C 3 32.148 9.965 -19.067 0.8 25.53 ? O1A NAP 202 A 1 HETATM 3 O O2A NAP . . . C 3 29.665 10.16 -19.12 0.8 25.91 ? O2A NAP 202 A 1 HETATM 4 O O5B NAP . . . C 3 31.015 11.977 -18.121 0.8 35.93 ? O5B NAP 202 A 1 HETATM 5 C C5B NAP . . . C 3 32.152 12.785 -17.991 0.8 42.03 ? C5B NAP 202 A 1 HETATM 6 C C4B NAP . . . C 3 32.249 12.989 -16.497 0.8 52.01 ? C4B NAP 202 A 1 HETATM 7 O O4B NAP . . . C 3 32.116 11.712 -15.896 0.8 56.36 ? O4B NAP 202 A 1 HETATM 8 C C3B NAP . . . C 3 33.593 13.545 -16.083 0.8 57.04 ? C3B NAP 202 A 1 HETATM 9 O O3B NAP . . . C 3 33.481 14.936 -15.895 0.8 61.77 ? O3B NAP 202 A 1 HETATM 10 C C2B NAP . . . C 3 33.863 12.802 -14.789 0.8 54.6 ? C2B NAP 202 A 1 HETATM 11 O O2B NAP . . . C 3 33.199 13.423 -13.733 0.8 49.3 ? O2B NAP 202 A 1 HETATM 12 C C1B NAP . . . C 3 33.105 11.501 -14.912 0.8 55.46 ? C1B NAP 202 A 1 HETATM 13 N N9A NAP . . . C 3 34.039 10.449 -15.341 0.8 50.74 ? N9A NAP 202 A 1 HETATM 14 C C8A NAP . . . C 3 34.188 9.991 -16.622 0.8 44.12 ? C8A NAP 202 A 1 HETATM 15 N N7A NAP . . . C 3 35.139 9.031 -16.606 0.8 45.94 ? N7A NAP 202 A 1 HETATM 16 C C5A NAP . . . C 3 35.594 8.865 -15.343 0.8 50.57 ? C5A NAP 202 A 1 HETATM 17 C C6A NAP . . . C 3 36.552 8.02 -14.795 0.8 51.39 ? C6A NAP 202 A 1 HETATM 18 N N6A NAP . . . C 3 37.213 7.164 -15.57 0.8 56.07 ? N6A NAP 202 A 1 HETATM 19 N N1A NAP . . . C 3 36.816 8.079 -13.444 0.8 45.98 ? N1A NAP 202 A 1 HETATM 20 C C2A NAP . . . C 3 36.123 8.974 -12.651 0.8 44.51 ? C2A NAP 202 A 1 HETATM 21 N N3A NAP . . . C 3 35.173 9.81 -13.198 0.8 48.49 ? N3A NAP 202 A 1 HETATM 22 C C4A NAP . . . C 3 34.911 9.758 -14.531 0.8 51.44 ? C4A NAP 202 A 1 HETATM 23 O O3 NAP . . . C 3 31.081 11.795 -20.543 0.8 30.28 ? O3 NAP 202 A 1 HETATM 24 P PN NAP . . . C 3 31.015 11.825 -22.189 0.8 40.78 ? PN NAP 202 A 1 HETATM 25 O O1N NAP . . . C 3 30.901 13.251 -22.576 0.8 42.8 ? O1N NAP 202 A 1 HETATM 26 O O2N NAP . . . C 3 32.149 11.048 -22.764 0.8 39.06 ? O2N NAP 202 A 1 HETATM 27 O O5D NAP . . . C 3 29.624 11.134 -22.627 0.8 38.07 ? O5D NAP 202 A 1 HETATM 28 C C5D NAP . . . C 3 28.416 11.855 -22.742 0.8 38.23 ? C5D NAP 202 A 1 HETATM 29 C C4D NAP . . . C 3 28.045 12.012 -24.213 0.8 40.36 ? C4D NAP 202 A 1 HETATM 30 O O4D NAP . . . C 3 28.321 10.813 -24.922 0.8 38.27 ? O4D NAP 202 A 1 HETATM 31 C C3D NAP . . . C 3 26.559 12.264 -24.387 0.8 42.65 ? C3D NAP 202 A 1 HETATM 32 O O3D NAP . . . C 3 26.396 12.968 -25.599 0.8 41.59 ? O3D NAP 202 A 1 HETATM 33 C C2D NAP . . . C 3 25.991 10.868 -24.534 0.8 42.08 ? C2D NAP 202 A 1 HETATM 34 O O2D NAP . . . C 3 24.789 10.858 -25.271 0.8 42.59 ? O2D NAP 202 A 1 HETATM 35 C C1D NAP . . . C 3 27.106 10.203 -25.324 0.8 38.76 ? C1D NAP 202 A 1 HETATM 36 N N1N NAP . . . C 3 27.196 8.74 -25.139 0.8 37.05 ? N1N NAP 202 A 1 HETATM 37 C C2N NAP . . . C 3 26.972 7.95 -26.232 0.8 31.51 ? C2N NAP 202 A 1 HETATM 38 C C3N NAP . . . C 3 27.053 6.574 -26.163 0.8 29.4 ? C3N NAP 202 A 1 HETATM 39 C C7N NAP . . . C 3 26.578 5.734 -27.325 0.8 30.44 ? C7N NAP 202 A 1 HETATM 40 O O7N NAP . . . C 3 26.423 4.355 -27.139 0.8 34.13 ? O7N NAP 202 A 1 HETATM 41 N N7N NAP . . . C 3 26.311 6.297 -28.503 0.8 28.54 ? N7N NAP 202 A 1 HETATM 42 C C4N NAP . . . C 3 27.389 5.999 -24.948 0.8 30.25 ? C4N NAP 202 A 1 HETATM 43 C C5N NAP . . . C 3 27.61 6.798 -23.827 0.8 35.81 ? C5N NAP 202 A 1 HETATM 44 C C6N NAP . . . C 3 27.523 8.183 -23.928 0.8 39.84 ? C6N NAP 202 A 1 HETATM 45 P P2B NAP . . . C 3 33.923 14.442 -12.752 0.8 47.08 ? P2B NAP 202 A 1 HETATM 46 O O1X NAP . . . C 3 35.07 13.71 -12.102 0.8 42.34 ? O1X NAP 202 A 1 HETATM 47 O O2X NAP . . . C 3 32.851 14.833 -11.77 0.8 45.07 ? O2X NAP 202 A 1 HETATM 48 O O3X NAP . . . C 3 34.409 15.655 -13.508 0.8 54.33 ? O3X NAP 202 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 218 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 48 #