data_4M6L # _model_server_result.job_id mloV8F4K51HL5SdGpGO1jQ _model_server_result.datetime_utc '2024-11-07 11:25:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4m6l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 4M6L # _exptl.entry_id 4M6L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 154.251 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2,3-DIHYDROXY-1,4-DITHIOBUTANE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4M6L _cell.length_a 67.781 _cell.length_b 67.781 _cell.length_c 160.408 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4M6L _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C4 H10 O2 S2' _chem_comp.formula_weight 154.251 _chem_comp.id DTT _chem_comp.mon_nstd_flag . _chem_comp.name 2,3-DIHYDROXY-1,4-DITHIOBUTANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1,4-DITHIOTHREITOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S1 C1 DTT sing 142 n n S1 HS1 DTT sing 143 n n C1 C2 DTT sing 144 n n C1 H11 DTT sing 145 n n C1 H12 DTT sing 146 n n C2 O2 DTT sing 147 n n C2 C3 DTT sing 148 n n C2 H2 DTT sing 149 n n O2 HO2 DTT sing 150 n n C3 O3 DTT sing 151 n n C3 C4 DTT sing 152 n n C3 H3 DTT sing 153 n n O3 HO3 DTT sing 154 n n C4 S4 DTT sing 155 n n C4 H41 DTT sing 156 n n C4 H42 DTT sing 157 n n S4 HS2 DTT sing 158 n n # _atom_sites.entry_id 4M6L _atom_sites.fract_transf_matrix[1][1] 0.014753 _atom_sites.fract_transf_matrix[1][2] 0.008518 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017036 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006234 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 21V A 1 201 1 21V DDF . C 3 NAP A 1 202 1 NAP NAP . D 4 DTT A 1 203 3236 DTT DTT . E 5 SO4 A 1 204 1 SO4 SO4 . F 6 HOH A 1 301 1 HOH HOH . F 6 HOH A 2 302 2 HOH HOH . F 6 HOH A 3 303 3 HOH HOH . F 6 HOH A 4 304 4 HOH HOH . F 6 HOH A 5 305 5 HOH HOH . F 6 HOH A 6 306 6 HOH HOH . F 6 HOH A 7 307 7 HOH HOH . F 6 HOH A 8 308 8 HOH HOH . F 6 HOH A 9 309 9 HOH HOH . F 6 HOH A 10 310 10 HOH HOH . F 6 HOH A 11 311 11 HOH HOH . F 6 HOH A 12 312 12 HOH HOH . F 6 HOH A 13 313 13 HOH HOH . F 6 HOH A 14 314 14 HOH HOH . F 6 HOH A 15 315 15 HOH HOH . F 6 HOH A 16 316 16 HOH HOH . F 6 HOH A 17 317 17 HOH HOH . F 6 HOH A 18 318 18 HOH HOH . F 6 HOH A 19 319 19 HOH HOH . F 6 HOH A 20 320 20 HOH HOH . F 6 HOH A 21 321 21 HOH HOH . F 6 HOH A 22 322 22 HOH HOH . F 6 HOH A 23 323 23 HOH HOH . F 6 HOH A 24 324 24 HOH HOH . F 6 HOH A 25 325 25 HOH HOH . F 6 HOH A 26 326 26 HOH HOH . F 6 HOH A 27 327 27 HOH HOH . F 6 HOH A 28 328 28 HOH HOH . F 6 HOH A 29 329 29 HOH HOH . F 6 HOH A 30 330 30 HOH HOH . F 6 HOH A 31 331 31 HOH HOH . F 6 HOH A 32 332 32 HOH HOH . F 6 HOH A 33 333 33 HOH HOH . F 6 HOH A 34 334 34 HOH HOH . F 6 HOH A 35 335 35 HOH HOH . F 6 HOH A 36 336 36 HOH HOH . F 6 HOH A 37 337 37 HOH HOH . F 6 HOH A 38 338 38 HOH HOH . F 6 HOH A 39 339 39 HOH HOH . F 6 HOH A 40 340 40 HOH HOH . F 6 HOH A 41 341 41 HOH HOH . F 6 HOH A 42 342 42 HOH HOH . F 6 HOH A 43 343 43 HOH HOH . F 6 HOH A 44 344 44 HOH HOH . F 6 HOH A 45 345 45 HOH HOH . F 6 HOH A 46 346 46 HOH HOH . F 6 HOH A 47 347 47 HOH HOH . F 6 HOH A 48 348 48 HOH HOH . F 6 HOH A 49 349 49 HOH HOH . F 6 HOH A 50 350 50 HOH HOH . F 6 HOH A 51 351 51 HOH HOH . F 6 HOH A 52 352 52 HOH HOH . F 6 HOH A 53 353 53 HOH HOH . F 6 HOH A 54 354 54 HOH HOH . F 6 HOH A 55 355 55 HOH HOH . F 6 HOH A 56 356 56 HOH HOH . F 6 HOH A 57 357 57 HOH HOH . F 6 HOH A 58 358 58 HOH HOH . F 6 HOH A 59 359 59 HOH HOH . F 6 HOH A 60 360 60 HOH HOH . F 6 HOH A 61 361 61 HOH HOH . F 6 HOH A 62 362 62 HOH HOH . F 6 HOH A 63 363 63 HOH HOH . F 6 HOH A 64 364 64 HOH HOH . F 6 HOH A 65 365 65 HOH HOH . F 6 HOH A 66 366 66 HOH HOH . F 6 HOH A 67 367 67 HOH HOH . F 6 HOH A 68 368 68 HOH HOH . F 6 HOH A 69 369 69 HOH HOH . F 6 HOH A 70 370 70 HOH HOH . F 6 HOH A 71 371 71 HOH HOH . F 6 HOH A 72 372 72 HOH HOH . F 6 HOH A 73 373 73 HOH HOH . F 6 HOH A 74 374 74 HOH HOH . F 6 HOH A 75 375 75 HOH HOH . F 6 HOH A 76 376 76 HOH HOH . F 6 HOH A 77 377 77 HOH HOH . F 6 HOH A 78 378 78 HOH HOH . F 6 HOH A 79 379 79 HOH HOH . F 6 HOH A 80 380 80 HOH HOH . F 6 HOH A 81 381 81 HOH HOH . F 6 HOH A 82 382 82 HOH HOH . F 6 HOH A 83 383 83 HOH HOH . F 6 HOH A 84 384 84 HOH HOH . F 6 HOH A 85 385 85 HOH HOH . F 6 HOH A 86 386 87 HOH HOH . F 6 HOH A 87 387 88 HOH HOH . F 6 HOH A 88 388 89 HOH HOH . F 6 HOH A 89 389 90 HOH HOH . F 6 HOH A 90 390 91 HOH HOH . F 6 HOH A 91 391 92 HOH HOH . F 6 HOH A 92 392 93 HOH HOH . F 6 HOH A 93 393 94 HOH HOH . F 6 HOH A 94 394 96 HOH HOH . F 6 HOH A 95 395 97 HOH HOH . F 6 HOH A 96 396 98 HOH HOH . F 6 HOH A 97 397 99 HOH HOH . F 6 HOH A 98 398 100 HOH HOH . F 6 HOH A 99 399 101 HOH HOH . F 6 HOH A 100 400 102 HOH HOH . F 6 HOH A 101 401 103 HOH HOH . F 6 HOH A 102 402 104 HOH HOH . F 6 HOH A 103 403 105 HOH HOH . F 6 HOH A 104 404 106 HOH HOH . F 6 HOH A 105 405 107 HOH HOH . F 6 HOH A 106 406 108 HOH HOH . F 6 HOH A 107 407 109 HOH HOH . F 6 HOH A 108 408 110 HOH HOH . F 6 HOH A 109 409 111 HOH HOH . F 6 HOH A 110 410 112 HOH HOH . F 6 HOH A 111 411 113 HOH HOH . F 6 HOH A 112 412 114 HOH HOH . F 6 HOH A 113 413 115 HOH HOH . F 6 HOH A 114 414 116 HOH HOH . F 6 HOH A 115 415 117 HOH HOH . F 6 HOH A 116 416 118 HOH HOH . F 6 HOH A 117 417 119 HOH HOH . F 6 HOH A 118 418 122 HOH HOH . F 6 HOH A 119 419 123 HOH HOH . F 6 HOH A 120 420 124 HOH HOH . F 6 HOH A 121 421 125 HOH HOH . F 6 HOH A 122 422 127 HOH HOH . F 6 HOH A 123 423 128 HOH HOH . F 6 HOH A 124 424 129 HOH HOH . F 6 HOH A 125 425 131 HOH HOH . F 6 HOH A 126 426 132 HOH HOH . F 6 HOH A 127 427 133 HOH HOH . F 6 HOH A 128 428 134 HOH HOH . F 6 HOH A 129 429 135 HOH HOH . F 6 HOH A 130 430 137 HOH HOH . F 6 HOH A 131 431 138 HOH HOH . F 6 HOH A 132 432 139 HOH HOH . F 6 HOH A 133 433 140 HOH HOH . F 6 HOH A 134 434 141 HOH HOH . F 6 HOH A 135 435 143 HOH HOH . F 6 HOH A 136 436 144 HOH HOH . F 6 HOH A 137 437 145 HOH HOH . F 6 HOH A 138 438 146 HOH HOH . F 6 HOH A 139 439 148 HOH HOH . F 6 HOH A 140 440 149 HOH HOH . F 6 HOH A 141 441 151 HOH HOH . F 6 HOH A 142 442 152 HOH HOH . F 6 HOH A 143 443 153 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S1 DTT . . . D 4 18.031 15.85 -11.218 1 103.84 ? S1 DTT 203 A 1 HETATM 2 C C1 DTT . . . D 4 19.482 15.436 -10.217 1 55 ? C1 DTT 203 A 1 HETATM 3 C C2 DTT . . . D 4 20.111 16.671 -9.591 1 59.88 ? C2 DTT 203 A 1 HETATM 4 O O2 DTT . . . D 4 20.642 17.486 -10.616 1 65.44 ? O2 DTT 203 A 1 HETATM 5 C C3 DTT . . . D 4 21.213 16.283 -8.619 1 60.23 ? C3 DTT 203 A 1 HETATM 6 O O3 DTT . . . D 4 20.715 15.279 -7.767 1 62.86 ? O3 DTT 203 A 1 HETATM 7 C C4 DTT . . . D 4 22.433 15.753 -9.362 1 58.97 ? C4 DTT 203 A 1 HETATM 8 S S4 DTT . . . D 4 24.017 16.249 -8.634 1 82.46 ? S4 DTT 203 A 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 346 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 8 #