data_4M6Q # _model_server_result.job_id lx4O7BZQsgKjF4u3cLUYxA _model_server_result.datetime_utc '2024-11-13 12:01:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4m6q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":602}' # _entry.id 4M6Q # _exptl.entry_id 4M6Q _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 175.959 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PYROPHOSPHATE 2-' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.56 _cell.angle_gamma 90 _cell.entry_id 4M6Q _cell.length_a 60.355 _cell.length_b 107.016 _cell.length_c 82.844 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4M6Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N # _chem_comp.formula 'H2 O7 P2 -2' _chem_comp.formula_weight 175.959 _chem_comp.id POP _chem_comp.mon_nstd_flag . _chem_comp.name 'PYROPHOSPHATE 2-' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P1 O1 POP doub 337 n n P1 O2 POP sing 338 n n P1 O3 POP sing 339 n n P1 O POP sing 340 n n O2 HO2 POP sing 341 n n O P2 POP sing 342 n n P2 O4 POP doub 343 n n P2 O5 POP sing 344 n n P2 O6 POP sing 345 n n O5 HO5 POP sing 346 n n # _atom_sites.entry_id 4M6Q _atom_sites.fract_transf_matrix[1][1] 0.016569 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001905 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009344 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01215 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 20T A 1 601 1 20T 20T . D 3 POP A 1 602 1 POP POP . E 4 PO4 A 1 603 5 PO4 PO4 . F 2 20T B 1 601 1 20T 20T . G 3 POP B 1 602 1 POP POP . H 4 PO4 B 1 603 6 PO4 PO4 . I 5 HOH A 1 701 5 HOH HOH . I 5 HOH A 2 702 6 HOH HOH . I 5 HOH A 3 703 7 HOH HOH . I 5 HOH A 4 704 8 HOH HOH . I 5 HOH A 5 705 11 HOH HOH . I 5 HOH A 6 706 15 HOH HOH . I 5 HOH A 7 707 16 HOH HOH . I 5 HOH A 8 708 18 HOH HOH . I 5 HOH A 9 709 19 HOH HOH . I 5 HOH A 10 710 21 HOH HOH . I 5 HOH A 11 711 28 HOH HOH . I 5 HOH A 12 712 30 HOH HOH . I 5 HOH A 13 713 31 HOH HOH . I 5 HOH A 14 714 32 HOH HOH . I 5 HOH A 15 715 36 HOH HOH . I 5 HOH A 16 716 40 HOH HOH . I 5 HOH A 17 717 41 HOH HOH . I 5 HOH A 18 718 42 HOH HOH . I 5 HOH A 19 719 43 HOH HOH . I 5 HOH A 20 720 48 HOH HOH . I 5 HOH A 21 721 49 HOH HOH . I 5 HOH A 22 722 51 HOH HOH . I 5 HOH A 23 723 52 HOH HOH . I 5 HOH A 24 724 56 HOH HOH . I 5 HOH A 25 725 58 HOH HOH . I 5 HOH A 26 726 59 HOH HOH . I 5 HOH A 27 727 61 HOH HOH . I 5 HOH A 28 728 64 HOH HOH . I 5 HOH A 29 729 65 HOH HOH . I 5 HOH A 30 730 66 HOH HOH . I 5 HOH A 31 731 67 HOH HOH . I 5 HOH A 32 732 68 HOH HOH . I 5 HOH A 33 733 69 HOH HOH . I 5 HOH A 34 734 70 HOH HOH . I 5 HOH A 35 735 71 HOH HOH . I 5 HOH A 36 736 73 HOH HOH . I 5 HOH A 37 737 74 HOH HOH . I 5 HOH A 38 738 77 HOH HOH . I 5 HOH A 39 739 78 HOH HOH . I 5 HOH A 40 740 81 HOH HOH . I 5 HOH A 41 741 82 HOH HOH . I 5 HOH A 42 742 86 HOH HOH . I 5 HOH A 43 743 88 HOH HOH . I 5 HOH A 44 744 93 HOH HOH . I 5 HOH A 45 745 94 HOH HOH . I 5 HOH A 46 746 98 HOH HOH . I 5 HOH A 47 747 99 HOH HOH . I 5 HOH A 48 748 100 HOH HOH . I 5 HOH A 49 749 101 HOH HOH . I 5 HOH A 50 750 104 HOH HOH . I 5 HOH A 51 751 105 HOH HOH . I 5 HOH A 52 752 107 HOH HOH . I 5 HOH A 53 753 108 HOH HOH . I 5 HOH A 54 754 111 HOH HOH . I 5 HOH A 55 755 112 HOH HOH . I 5 HOH A 56 756 114 HOH HOH . I 5 HOH A 57 757 116 HOH HOH . I 5 HOH A 58 758 117 HOH HOH . I 5 HOH A 59 759 119 HOH HOH . I 5 HOH A 60 760 120 HOH HOH . I 5 HOH A 61 761 121 HOH HOH . I 5 HOH A 62 762 122 HOH HOH . I 5 HOH A 63 763 126 HOH HOH . I 5 HOH A 64 764 127 HOH HOH . I 5 HOH A 65 765 131 HOH HOH . I 5 HOH A 66 766 134 HOH HOH . I 5 HOH A 67 767 135 HOH HOH . I 5 HOH A 68 768 136 HOH HOH . I 5 HOH A 69 769 138 HOH HOH . I 5 HOH A 70 770 141 HOH HOH . I 5 HOH A 71 771 144 HOH HOH . I 5 HOH A 72 772 146 HOH HOH . I 5 HOH A 73 773 147 HOH HOH . I 5 HOH A 74 774 149 HOH HOH . I 5 HOH A 75 775 150 HOH HOH . I 5 HOH A 76 776 158 HOH HOH . I 5 HOH A 77 777 160 HOH HOH . I 5 HOH A 78 778 161 HOH HOH . I 5 HOH A 79 779 164 HOH HOH . I 5 HOH A 80 780 165 HOH HOH . I 5 HOH A 81 781 166 HOH HOH . I 5 HOH A 82 782 169 HOH HOH . I 5 HOH A 83 783 170 HOH HOH . I 5 HOH A 84 784 173 HOH HOH . I 5 HOH A 85 785 174 HOH HOH . I 5 HOH A 86 786 175 HOH HOH . I 5 HOH A 87 787 177 HOH HOH . I 5 HOH A 88 788 184 HOH HOH . I 5 HOH A 89 789 186 HOH HOH . I 5 HOH A 90 790 187 HOH HOH . I 5 HOH A 91 791 190 HOH HOH . I 5 HOH A 92 792 191 HOH HOH . I 5 HOH A 93 793 192 HOH HOH . I 5 HOH A 94 794 194 HOH HOH . I 5 HOH A 95 795 195 HOH HOH . I 5 HOH A 96 796 197 HOH HOH . I 5 HOH A 97 797 200 HOH HOH . I 5 HOH A 98 798 201 HOH HOH . I 5 HOH A 99 799 202 HOH HOH . I 5 HOH A 100 800 203 HOH HOH . I 5 HOH A 101 801 204 HOH HOH . I 5 HOH A 102 802 205 HOH HOH . I 5 HOH A 103 803 206 HOH HOH . I 5 HOH A 104 804 207 HOH HOH . I 5 HOH A 105 805 213 HOH HOH . I 5 HOH A 106 806 219 HOH HOH . I 5 HOH A 107 807 220 HOH HOH . I 5 HOH A 108 808 222 HOH HOH . I 5 HOH A 109 809 223 HOH HOH . I 5 HOH A 110 810 224 HOH HOH . I 5 HOH A 111 811 225 HOH HOH . I 5 HOH A 112 812 226 HOH HOH . I 5 HOH A 113 813 227 HOH HOH . I 5 HOH A 114 814 229 HOH HOH . I 5 HOH A 115 815 230 HOH HOH . I 5 HOH A 116 816 234 HOH HOH . I 5 HOH A 117 817 235 HOH HOH . I 5 HOH A 118 818 238 HOH HOH . I 5 HOH A 119 819 239 HOH HOH . I 5 HOH A 120 820 240 HOH HOH . I 5 HOH A 121 821 241 HOH HOH . I 5 HOH A 122 822 242 HOH HOH . I 5 HOH A 123 823 243 HOH HOH . I 5 HOH A 124 824 250 HOH HOH . I 5 HOH A 125 825 252 HOH HOH . I 5 HOH A 126 826 255 HOH HOH . I 5 HOH A 127 827 257 HOH HOH . I 5 HOH A 128 828 258 HOH HOH . I 5 HOH A 129 829 260 HOH HOH . J 5 HOH B 1 701 188 HOH HOH . J 5 HOH B 2 702 1 HOH HOH . J 5 HOH B 3 703 2 HOH HOH . J 5 HOH B 4 704 3 HOH HOH . J 5 HOH B 5 705 4 HOH HOH . J 5 HOH B 6 706 9 HOH HOH . J 5 HOH B 7 707 10 HOH HOH . J 5 HOH B 8 708 12 HOH HOH . J 5 HOH B 9 709 13 HOH HOH . J 5 HOH B 10 710 14 HOH HOH . J 5 HOH B 11 711 17 HOH HOH . J 5 HOH B 12 712 20 HOH HOH . J 5 HOH B 13 713 22 HOH HOH . J 5 HOH B 14 714 23 HOH HOH . J 5 HOH B 15 715 24 HOH HOH . J 5 HOH B 16 716 25 HOH HOH . J 5 HOH B 17 717 26 HOH HOH . J 5 HOH B 18 718 27 HOH HOH . J 5 HOH B 19 719 33 HOH HOH . J 5 HOH B 20 720 34 HOH HOH . J 5 HOH B 21 721 35 HOH HOH . J 5 HOH B 22 722 37 HOH HOH . J 5 HOH B 23 723 38 HOH HOH . J 5 HOH B 24 724 39 HOH HOH . J 5 HOH B 25 725 44 HOH HOH . J 5 HOH B 26 726 45 HOH HOH . J 5 HOH B 27 727 46 HOH HOH . J 5 HOH B 28 728 47 HOH HOH . J 5 HOH B 29 729 53 HOH HOH . J 5 HOH B 30 730 54 HOH HOH . J 5 HOH B 31 731 55 HOH HOH . J 5 HOH B 32 732 57 HOH HOH . J 5 HOH B 33 733 60 HOH HOH . J 5 HOH B 34 734 62 HOH HOH . J 5 HOH B 35 735 63 HOH HOH . J 5 HOH B 36 736 72 HOH HOH . J 5 HOH B 37 737 75 HOH HOH . J 5 HOH B 38 738 76 HOH HOH . J 5 HOH B 39 739 79 HOH HOH . J 5 HOH B 40 740 80 HOH HOH . J 5 HOH B 41 741 83 HOH HOH . J 5 HOH B 42 742 84 HOH HOH . J 5 HOH B 43 743 85 HOH HOH . J 5 HOH B 44 744 87 HOH HOH . J 5 HOH B 45 745 89 HOH HOH . J 5 HOH B 46 746 90 HOH HOH . J 5 HOH B 47 747 91 HOH HOH . J 5 HOH B 48 748 92 HOH HOH . J 5 HOH B 49 749 95 HOH HOH . J 5 HOH B 50 750 96 HOH HOH . J 5 HOH B 51 751 97 HOH HOH . J 5 HOH B 52 752 102 HOH HOH . J 5 HOH B 53 753 103 HOH HOH . J 5 HOH B 54 754 106 HOH HOH . J 5 HOH B 55 755 109 HOH HOH . J 5 HOH B 56 756 110 HOH HOH . J 5 HOH B 57 757 113 HOH HOH . J 5 HOH B 58 758 115 HOH HOH . J 5 HOH B 59 759 118 HOH HOH . J 5 HOH B 60 760 123 HOH HOH . J 5 HOH B 61 761 124 HOH HOH . J 5 HOH B 62 762 125 HOH HOH . J 5 HOH B 63 763 128 HOH HOH . J 5 HOH B 64 764 129 HOH HOH . J 5 HOH B 65 765 130 HOH HOH . J 5 HOH B 66 766 132 HOH HOH . J 5 HOH B 67 767 133 HOH HOH . J 5 HOH B 68 768 137 HOH HOH . J 5 HOH B 69 769 139 HOH HOH . J 5 HOH B 70 770 140 HOH HOH . J 5 HOH B 71 771 142 HOH HOH . J 5 HOH B 72 772 143 HOH HOH . J 5 HOH B 73 773 145 HOH HOH . J 5 HOH B 74 774 148 HOH HOH . J 5 HOH B 75 775 151 HOH HOH . J 5 HOH B 76 776 152 HOH HOH . J 5 HOH B 77 777 153 HOH HOH . J 5 HOH B 78 778 154 HOH HOH . J 5 HOH B 79 779 155 HOH HOH . J 5 HOH B 80 780 156 HOH HOH . J 5 HOH B 81 781 157 HOH HOH . J 5 HOH B 82 782 159 HOH HOH . J 5 HOH B 83 783 162 HOH HOH . J 5 HOH B 84 784 163 HOH HOH . J 5 HOH B 85 785 167 HOH HOH . J 5 HOH B 86 786 168 HOH HOH . J 5 HOH B 87 787 171 HOH HOH . J 5 HOH B 88 788 172 HOH HOH . J 5 HOH B 89 789 176 HOH HOH . J 5 HOH B 90 790 178 HOH HOH . J 5 HOH B 91 791 179 HOH HOH . J 5 HOH B 92 792 180 HOH HOH . J 5 HOH B 93 793 181 HOH HOH . J 5 HOH B 94 794 182 HOH HOH . J 5 HOH B 95 795 183 HOH HOH . J 5 HOH B 96 796 185 HOH HOH . J 5 HOH B 97 797 189 HOH HOH . J 5 HOH B 98 798 193 HOH HOH . J 5 HOH B 99 799 196 HOH HOH . J 5 HOH B 100 800 198 HOH HOH . J 5 HOH B 101 801 199 HOH HOH . J 5 HOH B 102 802 208 HOH HOH . J 5 HOH B 103 803 209 HOH HOH . J 5 HOH B 104 804 210 HOH HOH . J 5 HOH B 105 805 211 HOH HOH . J 5 HOH B 106 806 212 HOH HOH . J 5 HOH B 107 807 214 HOH HOH . J 5 HOH B 108 808 215 HOH HOH . J 5 HOH B 109 809 216 HOH HOH . J 5 HOH B 110 810 217 HOH HOH . J 5 HOH B 111 811 218 HOH HOH . J 5 HOH B 112 812 221 HOH HOH . J 5 HOH B 113 813 228 HOH HOH . J 5 HOH B 114 814 231 HOH HOH . J 5 HOH B 115 815 232 HOH HOH . J 5 HOH B 116 816 233 HOH HOH . J 5 HOH B 117 817 236 HOH HOH . J 5 HOH B 118 818 237 HOH HOH . J 5 HOH B 119 819 244 HOH HOH . J 5 HOH B 120 820 245 HOH HOH . J 5 HOH B 121 821 246 HOH HOH . J 5 HOH B 122 822 247 HOH HOH . J 5 HOH B 123 823 248 HOH HOH . J 5 HOH B 124 824 249 HOH HOH . J 5 HOH B 125 825 251 HOH HOH . J 5 HOH B 126 826 253 HOH HOH . J 5 HOH B 127 827 254 HOH HOH . J 5 HOH B 128 828 256 HOH HOH . J 5 HOH B 129 829 259 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P1 POP . . . G 3 7.696 14.896 12.452 1 85.22 ? P1 POP 602 B 1 HETATM 2 O O1 POP . . . G 3 7.571 15.751 11.21 1 80.25 ? O1 POP 602 B 1 HETATM 3 O O2 POP . . . G 3 7.725 15.778 13.68 1 78.87 ? O2 POP 602 B 1 HETATM 4 O O3 POP . . . G 3 6.547 13.916 12.525 1 83.96 ? O3 POP 602 B 1 HETATM 5 O O POP . . . G 3 9.085 14.095 12.364 1 95.39 ? O POP 602 B 1 HETATM 6 P P2 POP . . . G 3 10.439 14.943 12.191 1 35.33 ? P2 POP 602 B 1 HETATM 7 O O4 POP . . . G 3 10.995 14.651 10.818 1 44.26 ? O4 POP 602 B 1 HETATM 8 O O5 POP . . . G 3 10.102 16.407 12.31 1 40.55 ? O5 POP 602 B 1 HETATM 9 O O6 POP . . . G 3 11.458 14.549 13.232 1 44.72 ? O6 POP 602 B 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 9 #