data_4M7E # _model_server_result.job_id 9dxp6sXyWZ8sLfYerLCg6g _model_server_result.datetime_utc '2024-11-15 14:19:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4m7e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":808}' # _entry.id 4M7E # _exptl.entry_id 4M7E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 480.677 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Brassinolide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4M7E _cell.length_a 145.911 _cell.length_b 145.911 _cell.length_c 166.24 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4M7E _symmetry.cell_setting ? _symmetry.Int_Tables_number 144 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,I,J,K,L 1 1 B,C,G,H,M,N,O 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 L N N ? 6 O N N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 3 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n E NAG 1 E 1 NAG A 801 NAG 3 n E NAG 2 E 2 NAG A 802 NAG 3 n F NAG 1 F 1 NAG A 803 NAG 3 n F NAG 2 F 2 NAG A 804 NAG 3 n G NAG 1 G 1 NAG B 802 NAG 3 n G NAG 2 G 2 NAG B 803 NAG 3 n H NAG 1 H 1 NAG B 804 NAG 3 n H NAG 2 H 2 NAG B 805 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 39 A CYS 62 1_555 A SG CYS 46 A CYS 69 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 97 A CYS 120 1_555 A SG CYS 124 A CYS 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf3 A SG CYS 176 A CYS 199 1_555 A SG CYS 198 A CYS 221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf4 A SG CYS 221 A CYS 244 1_555 A SG CYS 245 A CYS 268 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf5 A SG CYS 292 A CYS 315 1_555 A SG CYS 316 A CYS 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf6 A SG CYS 388 A CYS 411 1_555 A SG CYS 416 A CYS 439 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf7 A SG CYS 586 A CYS 609 1_555 A SG CYS 612 A CYS 635 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf8 B SG CYS 39 B CYS 62 1_555 B SG CYS 46 B CYS 69 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf9 B SG CYS 97 B CYS 120 1_555 B SG CYS 124 B CYS 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf10 B SG CYS 176 B CYS 199 1_555 B SG CYS 198 B CYS 221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf11 B SG CYS 221 B CYS 244 1_555 B SG CYS 245 B CYS 268 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf12 B SG CYS 292 B CYS 315 1_555 B SG CYS 316 B CYS 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf13 B SG CYS 388 B CYS 411 1_555 B SG CYS 416 B CYS 439 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf14 B SG CYS 586 B CYS 609 1_555 B SG CYS 612 B CYS 635 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf15 C SG CYS 32 D CYS 57 1_555 C SG CYS 39 D CYS 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? disulf ? disulf16 D SG CYS 32 C CYS 57 1_555 D SG CYS 39 C CYS 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? covale ? covale1 A ND2 ASN 131 A ASN 154 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale2 A ND2 ASN 252 A ASN 275 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale3 A ND2 ASN 522 A ASN 545 1_555 I C1 NAG . A NAG 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale4 B ND2 ASN 131 B ASN 154 1_555 G C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale5 B ND2 ASN 252 B ASN 275 1_555 H C1 NAG . H NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale6 B ND2 ASN 522 B ASN 545 1_555 M C1 NAG . B NAG 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.476 ? covale ? covale7 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.472 ? covale ? covale8 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.464 ? covale ? covale9 G O4 NAG . G NAG 1 1_555 G C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.467 ? covale ? covale10 H O4 NAG . H NAG 1 1_555 H C1 NAG . H NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.459 ? # _chem_comp.formula 'C28 H48 O6' _chem_comp.formula_weight 480.677 _chem_comp.id BLD _chem_comp.mon_nstd_flag . _chem_comp.name Brassinolide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '(3aS,5S,6R,7aR,7bS,9aS,10R,12aS,12bS)-10-[(2S,3R,4R,5S)-3,4-dihydroxy-5,6-dimethylheptan-2-yl]-5,6-dihydroxy-7a,9a-dime thylhexadecahydro-3H-benzo[c]indeno[5,4-e]oxepin-3-one' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C01 C10 BLD sing 70 n n C01 H101 BLD sing 71 n n C01 H201 BLD sing 72 n n C02 C03 BLD sing 73 n n C02 C01 BLD sing 74 n n C02 H02 BLD sing 75 n n O02 C02 BLD sing 76 n n O02 HO02 BLD sing 77 n n C03 C04 BLD sing 78 n n C03 H03 BLD sing 79 n n O03 C03 BLD sing 80 n n O03 HO03 BLD sing 81 n n C04 C05 BLD sing 82 n n C04 H104 BLD sing 83 n n C04 H204 BLD sing 84 n n C05 C06 BLD sing 85 n n C05 H05 BLD sing 86 n n C06 O06 BLD doub 87 n n C06 O07 BLD sing 88 n n C07 O07 BLD sing 89 n n C07 H107 BLD sing 90 n n C07 H207 BLD sing 91 n n C08 C07 BLD sing 92 n n C08 H08 BLD sing 93 n n C09 C11 BLD sing 94 n n C09 C08 BLD sing 95 n n C09 H09 BLD sing 96 n n C10 C09 BLD sing 97 n n C10 C05 BLD sing 98 n n C10 C19 BLD sing 99 n n C11 H111 BLD sing 100 n n C11 H211 BLD sing 101 n n C12 C11 BLD sing 102 n n C12 C13 BLD sing 103 n n C12 H112 BLD sing 104 n n C12 H212 BLD sing 105 n n C13 C14 BLD sing 106 n n C13 C18 BLD sing 107 n n C14 C08 BLD sing 108 n n C14 C15 BLD sing 109 n n C14 H14 BLD sing 110 n n C15 H115 BLD sing 111 n n C15 H215 BLD sing 112 n n C16 C15 BLD sing 113 n n C16 H116 BLD sing 114 n n C16 H216 BLD sing 115 n n C17 C13 BLD sing 116 n n C17 C20 BLD sing 117 n n C17 C16 BLD sing 118 n n C17 H17 BLD sing 119 n n C18 H118 BLD sing 120 n n C18 H218 BLD sing 121 n n C18 H318 BLD sing 122 n n C19 H119 BLD sing 123 n n C19 H219 BLD sing 124 n n C19 H319 BLD sing 125 n n C20 H20 BLD sing 126 n n C21 C20 BLD sing 127 n n C21 H121 BLD sing 128 n n C21 H221 BLD sing 129 n n C21 H321 BLD sing 130 n n C22 C23 BLD sing 131 n n C22 C20 BLD sing 132 n n C22 H22 BLD sing 133 n n O22 C22 BLD sing 134 n n O22 HO22 BLD sing 135 n n C23 C24 BLD sing 136 n n C23 H23 BLD sing 137 n n O23 C23 BLD sing 138 n n O23 HO23 BLD sing 139 n n C24 C25 BLD sing 140 n n C24 C28 BLD sing 141 n n C24 H24 BLD sing 142 n n C25 C27 BLD sing 143 n n C25 H25 BLD sing 144 n n C26 C25 BLD sing 145 n n C26 H126 BLD sing 146 n n C26 H226 BLD sing 147 n n C26 H326 BLD sing 148 n n C27 H127 BLD sing 149 n n C27 H227 BLD sing 150 n n C27 H327 BLD sing 151 n n C28 H128 BLD sing 152 n n C28 H228 BLD sing 153 n n C28 H328 BLD sing 154 n n # _atom_sites.entry_id 4M7E _atom_sites.fract_transf_matrix[1][1] 0.006853 _atom_sites.fract_transf_matrix[1][2] 0.003957 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007914 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006015 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 4 NAG A 1 805 805 NAG NAG . J 4 NAG A 1 806 806 NAG NAG . K 5 SO4 A 1 807 808 SO4 SO4 . L 6 BLD A 1 808 807 BLD BLD . M 4 NAG B 1 805 806 NAG NAG . N 5 SO4 B 1 806 807 SO4 SO4 . O 6 BLD B 1 807 801 BLD BLD . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 BLD . . . L 6 -13.097 -30.552 -23.719 1 6.9 ? C01 BLD 808 A 1 HETATM 2 C C02 BLD . . . L 6 -13.795 -30.758 -22.39 1 6.85 ? C02 BLD 808 A 1 HETATM 3 O O02 BLD . . . L 6 -12.889 -30.328 -21.371 1 9.21 ? O02 BLD 808 A 1 HETATM 4 C C03 BLD . . . L 6 -15.088 -29.954 -22.355 1 2.56 ? C03 BLD 808 A 1 HETATM 5 O O03 BLD . . . L 6 -14.839 -28.54 -22.203 1 7.43 ? O03 BLD 808 A 1 HETATM 6 C C04 BLD . . . L 6 -15.958 -30.238 -23.589 1 5 ? C04 BLD 808 A 1 HETATM 7 C C05 BLD . . . L 6 -15.297 -30.572 -24.942 1 2.82 ? C05 BLD 808 A 1 HETATM 8 C C06 BLD . . . L 6 -16.171 -31.516 -25.718 1 5.52 ? C06 BLD 808 A 1 HETATM 9 O O06 BLD . . . L 6 -16.731 -32.417 -25.144 1 9.7 ? O06 BLD 808 A 1 HETATM 10 C C07 BLD . . . L 6 -15.065 -30.744 -27.727 1 2.52 ? C07 BLD 808 A 1 HETATM 11 O O07 BLD . . . L 6 -15.828 -31.762 -27.099 1 11.77 ? O07 BLD 808 A 1 HETATM 12 C C08 BLD . . . L 6 -13.604 -31.08 -27.527 1 3.56 ? C08 BLD 808 A 1 HETATM 13 C C09 BLD . . . L 6 -13.083 -30.7 -26.149 1 2.66 ? C09 BLD 808 A 1 HETATM 14 C C10 BLD . . . L 6 -13.866 -31.12 -24.903 1 3.49 ? C10 BLD 808 A 1 HETATM 15 C C11 BLD . . . L 6 -11.706 -31.331 -26.07 1 7.6 ? C11 BLD 808 A 1 HETATM 16 C C12 BLD . . . L 6 -10.76 -30.727 -27.104 1 8.15 ? C12 BLD 808 A 1 HETATM 17 C C13 BLD . . . L 6 -11.281 -30.729 -28.535 1 13.62 ? C13 BLD 808 A 1 HETATM 18 C C14 BLD . . . L 6 -12.717 -30.262 -28.453 1 15.74 ? C14 BLD 808 A 1 HETATM 19 C C15 BLD . . . L 6 -13.106 -30.038 -29.901 1 15.77 ? C15 BLD 808 A 1 HETATM 20 C C16 BLD . . . L 6 -11.842 -29.35 -30.434 1 13.87 ? C16 BLD 808 A 1 HETATM 21 C C17 BLD . . . L 6 -10.703 -29.672 -29.468 1 6.58 ? C17 BLD 808 A 1 HETATM 22 C C18 BLD . . . L 6 -11.191 -32.088 -29.215 1 9.39 ? C18 BLD 808 A 1 HETATM 23 C C19 BLD . . . L 6 -13.801 -32.644 -24.764 1 1.16 ? C19 BLD 808 A 1 HETATM 24 C C20 BLD . . . L 6 -9.402 -30.045 -30.178 1 1.82 ? C20 BLD 808 A 1 HETATM 25 C C21 BLD . . . L 6 -8.24 -30.018 -29.183 1 1.4 ? C21 BLD 808 A 1 HETATM 26 C C22 BLD . . . L 6 -9.093 -29.2 -31.46 1 8.69 ? C22 BLD 808 A 1 HETATM 27 O O22 BLD . . . L 6 -9.043 -27.76 -31.261 1 11.37 ? O22 BLD 808 A 1 HETATM 28 C C23 BLD . . . L 6 -7.773 -29.621 -32.152 1 6.1 ? C23 BLD 808 A 1 HETATM 29 O O23 BLD . . . L 6 -7.042 -28.452 -32.6 1 10.87 ? O23 BLD 808 A 1 HETATM 30 C C24 BLD . . . L 6 -7.99 -30.725 -33.216 1 13.98 ? C24 BLD 808 A 1 HETATM 31 C C25 BLD . . . L 6 -6.691 -31.29 -33.775 1 17.17 ? C25 BLD 808 A 1 HETATM 32 C C26 BLD . . . L 6 -6.886 -32.771 -34.06 1 6.61 ? C26 BLD 808 A 1 HETATM 33 C C27 BLD . . . L 6 -5.519 -31.057 -32.836 1 10.17 ? C27 BLD 808 A 1 HETATM 34 C C28 BLD . . . L 6 -8.954 -30.358 -34.338 1 8.42 ? C28 BLD 808 A 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 34 #