data_4M7J # _model_server_result.job_id ucO7jBoqweVpYr8tXK6f9w _model_server_result.datetime_utc '2024-11-05 06:59:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4m7j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":302}' # _entry.id 4M7J # _exptl.entry_id 4M7J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 39.098 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'POTASSIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4M7J _cell.length_a 74.464 _cell.length_b 74.464 _cell.length_c 149.893 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4M7J _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 KDO KDA C2 O2 . O4 HO4 . sing 2 ? 3 3 2 KDO KDO C2 O2 . O8 HO8 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C KDA 1 A 1 KDA C 1 KDA 3 n C KDO 2 A 2 KDO C 1 KDO 3 n C KDO 3 A 3 KDO C 2 KDO # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 H CYS 22 1_555 A SG CYS 95 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? disulf ? disulf2 A SG CYS 145 H CYS 140 1_555 A SG CYS 200 H CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf3 B SG CYS 23 L CYS 23 1_555 B SG CYS 93 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? disulf ? disulf4 B SG CYS 139 L CYS 134 1_555 B SG CYS 199 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? covale ? covale1 A ND2 ASN 88 H ASN 85 1_555 D C1 NAG . H NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? covale ? covale2 C O4 KDA . A KDA 1 1_555 C C2 KDO . A KDO 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale3 C O8 KDO . A KDO 2 1_555 C C2 KDO . A KDO 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? metalc ? metalc1 A OG1 THR 30 H THR 30 1_555 E K K . H K 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.789 ? metalc ? metalc2 A O THR 30 H THR 30 1_555 E K K . H K 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.035 ? metalc ? metalc3 A OG1 THR 31 H THR 31 1_555 E K K . H K 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.757 ? # _chem_comp.formula 'K 1' _chem_comp.formula_weight 39.098 _chem_comp.id K _chem_comp.mon_nstd_flag . _chem_comp.name 'POTASSIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4M7J _atom_sites.fract_transf_matrix[1][1] 0.013429 _atom_sites.fract_transf_matrix[1][2] 0.007753 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015507 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006671 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NAG H 1 301 400 NAG NAG . E 5 K H 1 302 1 K K . F 6 PEG L 1 301 1 PEG PEG . G 7 HOH H 1 401 1 HOH HOH . G 7 HOH H 2 402 3 HOH HOH . G 7 HOH H 3 403 5 HOH HOH . G 7 HOH H 4 404 7 HOH HOH . G 7 HOH H 5 405 9 HOH HOH . G 7 HOH H 6 406 10 HOH HOH . G 7 HOH H 7 407 11 HOH HOH . G 7 HOH H 8 408 13 HOH HOH . G 7 HOH H 9 409 15 HOH HOH . G 7 HOH H 10 410 18 HOH HOH . G 7 HOH H 11 411 19 HOH HOH . G 7 HOH H 12 412 20 HOH HOH . G 7 HOH H 13 413 22 HOH HOH . G 7 HOH H 14 414 23 HOH HOH . G 7 HOH H 15 415 24 HOH HOH . G 7 HOH H 16 416 26 HOH HOH . G 7 HOH H 17 417 28 HOH HOH . G 7 HOH H 18 418 29 HOH HOH . G 7 HOH H 19 419 30 HOH HOH . G 7 HOH H 20 420 31 HOH HOH . G 7 HOH H 21 421 32 HOH HOH . G 7 HOH H 22 422 34 HOH HOH . G 7 HOH H 23 423 35 HOH HOH . G 7 HOH H 24 424 36 HOH HOH . G 7 HOH H 25 425 37 HOH HOH . G 7 HOH H 26 426 38 HOH HOH . G 7 HOH H 27 427 39 HOH HOH . G 7 HOH H 28 428 43 HOH HOH . G 7 HOH H 29 429 44 HOH HOH . G 7 HOH H 30 430 45 HOH HOH . G 7 HOH H 31 431 46 HOH HOH . G 7 HOH H 32 432 47 HOH HOH . G 7 HOH H 33 433 49 HOH HOH . G 7 HOH H 34 434 50 HOH HOH . G 7 HOH H 35 435 54 HOH HOH . G 7 HOH H 36 436 55 HOH HOH . G 7 HOH H 37 437 56 HOH HOH . G 7 HOH H 38 438 57 HOH HOH . G 7 HOH H 39 439 60 HOH HOH . G 7 HOH H 40 440 61 HOH HOH . G 7 HOH H 41 441 62 HOH HOH . G 7 HOH H 42 442 64 HOH HOH . G 7 HOH H 43 443 65 HOH HOH . G 7 HOH H 44 444 68 HOH HOH . G 7 HOH H 45 445 70 HOH HOH . G 7 HOH H 46 446 71 HOH HOH . G 7 HOH H 47 447 72 HOH HOH . G 7 HOH H 48 448 73 HOH HOH . G 7 HOH H 49 449 74 HOH HOH . G 7 HOH H 50 450 76 HOH HOH . G 7 HOH H 51 451 77 HOH HOH . G 7 HOH H 52 452 78 HOH HOH . G 7 HOH H 53 453 79 HOH HOH . G 7 HOH H 54 454 80 HOH HOH . G 7 HOH H 55 455 82 HOH HOH . G 7 HOH H 56 456 83 HOH HOH . G 7 HOH H 57 457 84 HOH HOH . G 7 HOH H 58 458 86 HOH HOH . G 7 HOH H 59 459 87 HOH HOH . G 7 HOH H 60 460 89 HOH HOH . G 7 HOH H 61 461 91 HOH HOH . G 7 HOH H 62 462 92 HOH HOH . G 7 HOH H 63 463 93 HOH HOH . G 7 HOH H 64 464 94 HOH HOH . G 7 HOH H 65 465 96 HOH HOH . G 7 HOH H 66 466 98 HOH HOH . G 7 HOH H 67 467 101 HOH HOH . G 7 HOH H 68 468 102 HOH HOH . G 7 HOH H 69 469 106 HOH HOH . G 7 HOH H 70 470 109 HOH HOH . G 7 HOH H 71 471 110 HOH HOH . G 7 HOH H 72 472 111 HOH HOH . G 7 HOH H 73 473 113 HOH HOH . G 7 HOH H 74 474 114 HOH HOH . G 7 HOH H 75 475 116 HOH HOH . G 7 HOH H 76 476 117 HOH HOH . G 7 HOH H 77 477 118 HOH HOH . G 7 HOH H 78 478 119 HOH HOH . G 7 HOH H 79 479 120 HOH HOH . G 7 HOH H 80 480 121 HOH HOH . G 7 HOH H 81 481 122 HOH HOH . G 7 HOH H 82 482 123 HOH HOH . G 7 HOH H 83 483 124 HOH HOH . G 7 HOH H 84 484 125 HOH HOH . G 7 HOH H 85 485 128 HOH HOH . G 7 HOH H 86 486 129 HOH HOH . G 7 HOH H 87 487 131 HOH HOH . G 7 HOH H 88 488 133 HOH HOH . G 7 HOH H 89 489 136 HOH HOH . G 7 HOH H 90 490 139 HOH HOH . G 7 HOH H 91 491 140 HOH HOH . G 7 HOH H 92 492 141 HOH HOH . G 7 HOH H 93 493 142 HOH HOH . G 7 HOH H 94 494 144 HOH HOH . G 7 HOH H 95 495 145 HOH HOH . G 7 HOH H 96 496 146 HOH HOH . G 7 HOH H 97 497 147 HOH HOH . G 7 HOH H 98 498 150 HOH HOH . G 7 HOH H 99 499 151 HOH HOH . G 7 HOH H 100 500 152 HOH HOH . G 7 HOH H 101 501 156 HOH HOH . G 7 HOH H 102 502 160 HOH HOH . G 7 HOH H 103 503 163 HOH HOH . G 7 HOH H 104 504 164 HOH HOH . G 7 HOH H 105 505 165 HOH HOH . G 7 HOH H 106 506 166 HOH HOH . G 7 HOH H 107 507 167 HOH HOH . G 7 HOH H 108 508 168 HOH HOH . G 7 HOH H 109 509 170 HOH HOH . G 7 HOH H 110 510 179 HOH HOH . G 7 HOH H 111 511 181 HOH HOH . G 7 HOH H 112 512 183 HOH HOH . G 7 HOH H 113 513 186 HOH HOH . G 7 HOH H 114 514 187 HOH HOH . G 7 HOH H 115 515 188 HOH HOH . G 7 HOH H 116 516 189 HOH HOH . G 7 HOH H 117 517 190 HOH HOH . G 7 HOH H 118 518 191 HOH HOH . G 7 HOH H 119 519 192 HOH HOH . G 7 HOH H 120 520 193 HOH HOH . G 7 HOH H 121 521 195 HOH HOH . G 7 HOH H 122 522 196 HOH HOH . G 7 HOH H 123 523 200 HOH HOH . G 7 HOH H 124 524 201 HOH HOH . G 7 HOH H 125 525 202 HOH HOH . G 7 HOH H 126 526 204 HOH HOH . G 7 HOH H 127 527 205 HOH HOH . G 7 HOH H 128 528 206 HOH HOH . G 7 HOH H 129 529 207 HOH HOH . G 7 HOH H 130 530 209 HOH HOH . G 7 HOH H 131 531 210 HOH HOH . G 7 HOH H 132 532 211 HOH HOH . G 7 HOH H 133 533 214 HOH HOH . G 7 HOH H 134 534 215 HOH HOH . G 7 HOH H 135 535 216 HOH HOH . G 7 HOH H 136 536 112 HOH HOH . H 7 HOH L 1 401 2 HOH HOH . H 7 HOH L 2 402 4 HOH HOH . H 7 HOH L 3 403 6 HOH HOH . H 7 HOH L 4 404 8 HOH HOH . H 7 HOH L 5 405 12 HOH HOH . H 7 HOH L 6 406 14 HOH HOH . H 7 HOH L 7 407 16 HOH HOH . H 7 HOH L 8 408 17 HOH HOH . H 7 HOH L 9 409 21 HOH HOH . H 7 HOH L 10 410 25 HOH HOH . H 7 HOH L 11 411 27 HOH HOH . H 7 HOH L 12 412 33 HOH HOH . H 7 HOH L 13 413 40 HOH HOH . H 7 HOH L 14 414 41 HOH HOH . H 7 HOH L 15 415 42 HOH HOH . H 7 HOH L 16 416 48 HOH HOH . H 7 HOH L 17 417 51 HOH HOH . H 7 HOH L 18 418 52 HOH HOH . H 7 HOH L 19 419 53 HOH HOH . H 7 HOH L 20 420 58 HOH HOH . H 7 HOH L 21 421 59 HOH HOH . H 7 HOH L 22 422 63 HOH HOH . H 7 HOH L 23 423 66 HOH HOH . H 7 HOH L 24 424 67 HOH HOH . H 7 HOH L 25 425 75 HOH HOH . H 7 HOH L 26 426 81 HOH HOH . H 7 HOH L 27 427 85 HOH HOH . H 7 HOH L 28 428 88 HOH HOH . H 7 HOH L 29 429 90 HOH HOH . H 7 HOH L 30 430 95 HOH HOH . H 7 HOH L 31 431 97 HOH HOH . H 7 HOH L 32 432 99 HOH HOH . H 7 HOH L 33 433 100 HOH HOH . H 7 HOH L 34 434 103 HOH HOH . H 7 HOH L 35 435 104 HOH HOH . H 7 HOH L 36 436 105 HOH HOH . H 7 HOH L 37 437 107 HOH HOH . H 7 HOH L 38 438 108 HOH HOH . H 7 HOH L 39 439 115 HOH HOH . H 7 HOH L 40 440 126 HOH HOH . H 7 HOH L 41 441 127 HOH HOH . H 7 HOH L 42 442 130 HOH HOH . H 7 HOH L 43 443 132 HOH HOH . H 7 HOH L 44 444 134 HOH HOH . H 7 HOH L 45 445 135 HOH HOH . H 7 HOH L 46 446 137 HOH HOH . H 7 HOH L 47 447 138 HOH HOH . H 7 HOH L 48 448 143 HOH HOH . H 7 HOH L 49 449 148 HOH HOH . H 7 HOH L 50 450 149 HOH HOH . H 7 HOH L 51 451 153 HOH HOH . H 7 HOH L 52 452 154 HOH HOH . H 7 HOH L 53 453 155 HOH HOH . H 7 HOH L 54 454 157 HOH HOH . H 7 HOH L 55 455 158 HOH HOH . H 7 HOH L 56 456 159 HOH HOH . H 7 HOH L 57 457 161 HOH HOH . H 7 HOH L 58 458 162 HOH HOH . H 7 HOH L 59 459 169 HOH HOH . H 7 HOH L 60 460 171 HOH HOH . H 7 HOH L 61 461 172 HOH HOH . H 7 HOH L 62 462 173 HOH HOH . H 7 HOH L 63 463 174 HOH HOH . H 7 HOH L 64 464 175 HOH HOH . H 7 HOH L 65 465 176 HOH HOH . H 7 HOH L 66 466 177 HOH HOH . H 7 HOH L 67 467 178 HOH HOH . H 7 HOH L 68 468 180 HOH HOH . H 7 HOH L 69 469 182 HOH HOH . H 7 HOH L 70 470 184 HOH HOH . H 7 HOH L 71 471 185 HOH HOH . H 7 HOH L 72 472 194 HOH HOH . H 7 HOH L 73 473 197 HOH HOH . H 7 HOH L 74 474 198 HOH HOH . H 7 HOH L 75 475 199 HOH HOH . H 7 HOH L 76 476 203 HOH HOH . H 7 HOH L 77 477 208 HOH HOH . H 7 HOH L 78 478 212 HOH HOH . H 7 HOH L 79 479 213 HOH HOH . H 7 HOH L 80 480 218 HOH HOH . H 7 HOH L 81 481 219 HOH HOH . H 7 HOH L 82 482 220 HOH HOH . H 7 HOH L 83 483 221 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol K _atom_site.label_atom_id K _atom_site.label_comp_id K _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 5 _atom_site.Cartn_x 10.467 _atom_site.Cartn_y 40.976 _atom_site.Cartn_z -17.986 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 44.33 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id K _atom_site.auth_comp_id K _atom_site.auth_seq_id 302 _atom_site.auth_asym_id H _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #