data_4M7V # _model_server_result.job_id S_cEtg36KtoUkQkdI6RB2Q _model_server_result.datetime_utc '2025-02-23 22:47:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4m7v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":200}' # _entry.id 4M7V # _exptl.entry_id 4M7V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 486.566 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-(3,4-dimethoxy-5-{(1E)-3-oxo-3-[(1S)-1-propylphthalazin-2(1H)-yl]prop-1-en-1-yl}benzyl)pyrimidine-2,4-diamine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4M7V _cell.length_a 63.254 _cell.length_b 63.254 _cell.length_c 97.148 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4M7V _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C27 H30 N6 O3' _chem_comp.formula_weight 486.566 _chem_comp.id RAR _chem_comp.mon_nstd_flag . _chem_comp.name 5-(3,4-dimethoxy-5-{(1E)-3-oxo-3-[(1S)-1-propylphthalazin-2(1H)-yl]prop-1-en-1-yl}benzyl)pyrimidine-2,4-diamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms (S)-3-(5-((2,4-diaminopyrimidin-5-yl)methyl)-2,3-dimethoxyphenyl)-1-(1-propylphthalazin-2(1H)-yl)prop-2-en-1-one # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C02 N01 RAR sing 357 n n N01 HN01 RAR sing 358 n n N01 HN0A RAR sing 359 n n C03 C02 RAR doub 360 n y N36 C02 RAR sing 361 n y C32 C03 RAR sing 362 n y C03 C04 RAR sing 363 n n C05 C04 RAR sing 364 n n C04 H04 RAR sing 365 n n C04 H04A RAR sing 366 n n C06 C05 RAR doub 367 n y C31 C05 RAR sing 368 n y C07 C06 RAR sing 369 n y C06 H06 RAR sing 370 n n O08 C07 RAR sing 371 n n C10 C07 RAR doub 372 n y O08 C09 RAR sing 373 n n C09 H09 RAR sing 374 n n C09 H09A RAR sing 375 n n C09 H09B RAR sing 376 n n O11 C10 RAR sing 377 n n C10 C13 RAR sing 378 n y C12 O11 RAR sing 379 n n C12 H12 RAR sing 380 n n C12 H12A RAR sing 381 n n C12 H12B RAR sing 382 n n C14 C13 RAR sing 383 e n C13 C31 RAR doub 384 n y C15 C14 RAR doub 385 n n C14 H14 RAR sing 386 n n C16 C15 RAR sing 387 n n C15 H15 RAR sing 388 n n O30 C16 RAR doub 389 n n C16 N17 RAR sing 390 n n C20 N17 RAR sing 391 n n N17 N18 RAR sing 392 n n N18 C19 RAR doub 393 n n C19 C25 RAR sing 394 n n C19 H19 RAR sing 395 n n C21 C20 RAR sing 396 n n C20 C24 RAR sing 397 n n C20 H20 RAR sing 398 n n C22 C21 RAR sing 399 n n C21 H21 RAR sing 400 n n C21 H21A RAR sing 401 n n C23 C22 RAR sing 402 n n C22 H22 RAR sing 403 n n C22 H22A RAR sing 404 n n C23 H23 RAR sing 405 n n C23 H23A RAR sing 406 n n C23 H23B RAR sing 407 n n C24 C29 RAR doub 408 n y C24 C25 RAR sing 409 n y C25 C26 RAR doub 410 n y C26 C27 RAR sing 411 n y C26 H26 RAR sing 412 n n C28 C27 RAR doub 413 n y C27 H27 RAR sing 414 n n C29 C28 RAR sing 415 n y C28 H28 RAR sing 416 n n C29 H29 RAR sing 417 n n C31 H31 RAR sing 418 n n N33 C32 RAR doub 419 n y C32 H32 RAR sing 420 n n N33 C34 RAR sing 421 n y N35 C34 RAR sing 422 n n C34 N36 RAR doub 423 n y N35 HN35 RAR sing 424 n n N35 HN3A RAR sing 425 n n # _atom_sites.entry_id 4M7V _atom_sites.fract_transf_matrix[1][1] 0.015809 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015809 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010294 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RAR A 1 200 200 RAR RAR . C 3 NAP A 1 201 201 NAP NAP . D 4 HOH A 1 301 301 HOH HOH . D 4 HOH A 2 302 302 HOH HOH . D 4 HOH A 3 303 303 HOH HOH . D 4 HOH A 4 304 304 HOH HOH . D 4 HOH A 5 305 305 HOH HOH . D 4 HOH A 6 306 306 HOH HOH . D 4 HOH A 7 307 307 HOH HOH . D 4 HOH A 8 308 308 HOH HOH . D 4 HOH A 9 309 309 HOH HOH . D 4 HOH A 10 310 310 HOH HOH . D 4 HOH A 11 311 311 HOH HOH . D 4 HOH A 12 312 312 HOH HOH . D 4 HOH A 13 313 313 HOH HOH . D 4 HOH A 14 314 314 HOH HOH . D 4 HOH A 15 315 315 HOH HOH . D 4 HOH A 16 316 316 HOH HOH . D 4 HOH A 17 317 317 HOH HOH . D 4 HOH A 18 318 318 HOH HOH . D 4 HOH A 19 319 319 HOH HOH . D 4 HOH A 20 320 320 HOH HOH . D 4 HOH A 21 321 321 HOH HOH . D 4 HOH A 22 322 322 HOH HOH . D 4 HOH A 23 323 323 HOH HOH . D 4 HOH A 24 324 324 HOH HOH . D 4 HOH A 25 325 325 HOH HOH . D 4 HOH A 26 326 326 HOH HOH . D 4 HOH A 27 327 327 HOH HOH . D 4 HOH A 28 328 328 HOH HOH . D 4 HOH A 29 329 329 HOH HOH . D 4 HOH A 30 330 330 HOH HOH . D 4 HOH A 31 331 331 HOH HOH . D 4 HOH A 32 332 332 HOH HOH . D 4 HOH A 33 333 333 HOH HOH . D 4 HOH A 34 334 334 HOH HOH . D 4 HOH A 35 335 335 HOH HOH . D 4 HOH A 36 336 336 HOH HOH . D 4 HOH A 37 337 337 HOH HOH . D 4 HOH A 38 338 338 HOH HOH . D 4 HOH A 39 339 339 HOH HOH . D 4 HOH A 40 340 340 HOH HOH . D 4 HOH A 41 341 341 HOH HOH . D 4 HOH A 42 342 342 HOH HOH . D 4 HOH A 43 343 343 HOH HOH . D 4 HOH A 44 344 344 HOH HOH . D 4 HOH A 45 345 345 HOH HOH . D 4 HOH A 46 346 346 HOH HOH . D 4 HOH A 47 347 347 HOH HOH . D 4 HOH A 48 348 348 HOH HOH . D 4 HOH A 49 349 349 HOH HOH . D 4 HOH A 50 350 350 HOH HOH . D 4 HOH A 51 351 351 HOH HOH . D 4 HOH A 52 352 352 HOH HOH . D 4 HOH A 53 353 353 HOH HOH . D 4 HOH A 54 354 354 HOH HOH . D 4 HOH A 55 355 355 HOH HOH . D 4 HOH A 56 356 356 HOH HOH . D 4 HOH A 57 357 357 HOH HOH . D 4 HOH A 58 358 358 HOH HOH . D 4 HOH A 59 359 359 HOH HOH . D 4 HOH A 60 360 360 HOH HOH . D 4 HOH A 61 361 361 HOH HOH . D 4 HOH A 62 362 362 HOH HOH . D 4 HOH A 63 363 363 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N01 RAR . A . B 2 20.26 -17.643 6.877 0.58 27.68 ? N01 RAR 200 A 1 HETATM 2 N N01 RAR . B . B 2 20.307 -17.59 6.475 0.42 27.68 ? N01 RAR 200 A 1 HETATM 3 C C02 RAR . A . B 2 21.68 -17.764 6.981 0.58 28.22 ? C02 RAR 200 A 1 HETATM 4 C C02 RAR . B . B 2 21.712 -17.726 6.695 0.42 28.24 ? C02 RAR 200 A 1 HETATM 5 C C03 RAR . A . B 2 22.288 -17.617 8.169 0.58 29.16 ? C03 RAR 200 A 1 HETATM 6 C C03 RAR . B . B 2 22.212 -17.549 7.923 0.42 29.21 ? C03 RAR 200 A 1 HETATM 7 C C04 RAR . A . B 2 21.459 -17.299 9.372 0.58 29.82 ? C04 RAR 200 A 1 HETATM 8 C C04 RAR . B . B 2 21.272 -17.185 9.021 0.42 29.63 ? C04 RAR 200 A 1 HETATM 9 C C05 RAR . A . B 2 22.26 -16.741 10.502 0.58 31.66 ? C05 RAR 200 A 1 HETATM 10 C C05 RAR . B . B 2 21.971 -16.892 10.299 0.42 31.39 ? C05 RAR 200 A 1 HETATM 11 C C06 RAR . A . B 2 22.335 -17.422 11.74 0.58 32.37 ? C06 RAR 200 A 1 HETATM 12 C C06 RAR . B . B 2 21.933 -17.825 11.356 0.42 32.01 ? C06 RAR 200 A 1 HETATM 13 C C07 RAR . A . B 2 23.046 -16.886 12.781 0.58 33.55 ? C07 RAR 200 A 1 HETATM 14 C C07 RAR . B . B 2 22.535 -17.54 12.545 0.42 33.02 ? C07 RAR 200 A 1 HETATM 15 O O08 RAR . A . B 2 23.097 -17.532 13.996 0.58 33.92 ? O08 RAR 200 A 1 HETATM 16 O O08 RAR . B . B 2 22.463 -18.466 13.569 0.42 33.82 ? O08 RAR 200 A 1 HETATM 17 C C09 RAR . A . B 2 22.138 -18.48 14.288 0.58 34.26 ? C09 RAR 200 A 1 HETATM 18 C C09 RAR . B . B 2 21.449 -19.404 13.583 0.42 33.57 ? C09 RAR 200 A 1 HETATM 19 C C10 RAR . A . B 2 23.748 -15.589 12.606 0.58 33.87 ? C10 RAR 200 A 1 HETATM 20 C C10 RAR . B . B 2 23.247 -16.24 12.726 0.42 33.68 ? C10 RAR 200 A 1 HETATM 21 O O11 RAR . A . B 2 24.491 -15.082 13.629 0.58 34.54 ? O11 RAR 200 A 1 HETATM 22 O O11 RAR . B . B 2 23.85 -15.963 13.926 0.42 34.03 ? O11 RAR 200 A 1 HETATM 23 C C12 RAR . A . B 2 25.631 -15.755 14.026 0.58 34.44 ? C12 RAR 200 A 1 HETATM 24 C C12 RAR . B . B 2 24.906 -16.732 14.371 0.42 33.25 ? C12 RAR 200 A 1 HETATM 25 C C13 RAR . A . B 2 23.677 -14.929 11.409 0.58 34.33 ? C13 RAR 200 A 1 HETATM 26 C C13 RAR . B . B 2 23.289 -15.332 11.69 0.42 34.03 ? C13 RAR 200 A 1 HETATM 27 C C14 RAR . A . B 2 24.298 -13.582 11.239 0.58 36.04 ? C14 RAR 200 A 1 HETATM 28 C C14 RAR . B . B 2 23.903 -13.97 11.84 0.42 35.48 ? C14 RAR 200 A 1 HETATM 29 C C15 RAR . A . B 2 25.64 -13.426 11.307 0.58 37.28 ? C15 RAR 200 A 1 HETATM 30 C C15 RAR . B . B 2 25.214 -13.66 11.627 0.42 36.74 ? C15 RAR 200 A 1 HETATM 31 C C16 RAR . A . B 2 26.215 -12.207 11.909 0.58 39.6 ? C16 RAR 200 A 1 HETATM 32 C C16 RAR . B . B 2 25.967 -13.186 12.813 0.42 38.48 ? C16 RAR 200 A 1 HETATM 33 N N17 RAR . A . B 2 26.339 -11.055 11.076 0.58 41.12 ? N17 RAR 200 A 1 HETATM 34 N N17 RAR . B . B 2 26.678 -11.937 12.835 0.42 39.85 ? N17 RAR 200 A 1 HETATM 35 N N18 RAR . A . B 2 25.609 -11.033 9.797 0.58 39.91 ? N18 RAR 200 A 1 HETATM 36 N N18 RAR . B . B 2 26.64 -11.057 11.655 0.42 41.21 ? N18 RAR 200 A 1 HETATM 37 C C19 RAR . A . B 2 26.176 -10.149 8.766 0.58 42.69 ? C19 RAR 200 A 1 HETATM 38 C C19 RAR . B . B 2 27.445 -9.834 11.79 0.42 41.83 ? C19 RAR 200 A 1 HETATM 39 C C20 RAR . A . B 2 27.228 -9.953 11.461 0.58 42.05 ? C20 RAR 200 A 1 HETATM 40 C C20 RAR . B . B 2 27.215 -11.441 14.111 0.42 40.62 ? C20 RAR 200 A 1 HETATM 41 C C21 RAR . A . B 2 28.597 -10.224 11.983 0.58 40.87 ? C21 RAR 200 A 1 HETATM 42 C C21 RAR . B . B 2 28.308 -12.153 14.842 0.42 41.76 ? C21 RAR 200 A 1 HETATM 43 C C22 RAR . A . B 2 29.71 -10.191 11.002 0.58 40.69 ? C22 RAR 200 A 1 HETATM 44 C C22 RAR . B . B 2 28.88 -13.416 14.305 0.42 38.89 ? C22 RAR 200 A 1 HETATM 45 C C23 RAR . A . B 2 29.548 -10.991 9.76 0.58 40.83 ? C23 RAR 200 A 1 HETATM 46 C C23 RAR . B . B 2 30.102 -13.965 14.956 0.42 44.26 ? C23 RAR 200 A 1 HETATM 47 C C24 RAR . A . B 2 27.115 -8.714 10.582 0.58 42.38 ? C24 RAR 200 A 1 HETATM 48 C C24 RAR . B . B 2 27.089 -9.914 14.234 0.42 40.84 ? C24 RAR 200 A 1 HETATM 49 C C25 RAR . A . B 2 26.686 -8.821 9.299 0.58 43.16 ? C25 RAR 200 A 1 HETATM 50 C C25 RAR . B . B 2 27.204 -9.15 13.119 0.42 42.74 ? C25 RAR 200 A 1 HETATM 51 C C26 RAR . A . B 2 26.707 -7.682 8.468 0.58 45.6 ? C26 RAR 200 A 1 HETATM 52 C C26 RAR . B . B 2 27.086 -7.746 13.196 0.42 43.48 ? C26 RAR 200 A 1 HETATM 53 C C27 RAR . A . B 2 27.148 -6.424 8.979 0.58 45.87 ? C27 RAR 200 A 1 HETATM 54 C C27 RAR . B . B 2 26.842 -7.128 14.463 0.42 42.39 ? C27 RAR 200 A 1 HETATM 55 C C28 RAR . A . B 2 27.603 -6.319 10.307 0.58 47.4 ? C28 RAR 200 A 1 HETATM 56 C C28 RAR . B . B 2 26.72 -7.919 15.621 0.42 43.21 ? C28 RAR 200 A 1 HETATM 57 C C29 RAR . A . B 2 27.604 -7.416 11.118 0.58 45.52 ? C29 RAR 200 A 1 HETATM 58 C C29 RAR . B . B 2 26.832 -9.275 15.549 0.42 41 ? C29 RAR 200 A 1 HETATM 59 O O30 RAR . A . B 2 26.826 -12.314 12.968 0.58 40.28 ? O30 RAR 200 A 1 HETATM 60 O O30 RAR . B . B 2 25.843 -13.82 13.846 0.42 37.86 ? O30 RAR 200 A 1 HETATM 61 C C31 RAR . A . B 2 22.931 -15.479 10.352 0.58 32.66 ? C31 RAR 200 A 1 HETATM 62 C C31 RAR . B . B 2 22.642 -15.637 10.477 0.42 32.59 ? C31 RAR 200 A 1 HETATM 63 C C32 RAR . A . B 2 23.672 -17.732 8.243 0.58 29.12 ? C32 RAR 200 A 1 HETATM 64 C C32 RAR . B . B 2 23.578 -17.675 8.135 0.42 29.19 ? C32 RAR 200 A 1 HETATM 65 N N33 RAR . A . B 2 24.413 -17.988 7.112 0.58 28.81 ? N33 RAR 200 A 1 HETATM 66 N N33 RAR . B . B 2 24.411 -17.982 7.085 0.42 28.75 ? N33 RAR 200 A 1 HETATM 67 C C34 RAR . A . B 2 23.783 -18.149 5.898 0.58 28.03 ? C34 RAR 200 A 1 HETATM 68 C C34 RAR . B . B 2 23.893 -18.171 5.823 0.42 28 ? C34 RAR 200 A 1 HETATM 69 N N35 RAR . A . B 2 24.549 -18.437 4.733 0.58 28.38 ? N35 RAR 200 A 1 HETATM 70 N N35 RAR . B . B 2 24.753 -18.502 4.737 0.42 28.39 ? N35 RAR 200 A 1 HETATM 71 N N36 RAR . A . B 2 22.454 -18.037 5.814 0.58 27.97 ? N36 RAR 200 A 1 HETATM 72 N N36 RAR . B . B 2 22.58 -18.046 5.613 0.42 28.04 ? N36 RAR 200 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 72 #