data_4M7X
#
_model_server_result.job_id            tZR40x7rUYPJkl76eBcw4A 
_model_server_result.datetime_utc      '2024-10-10 15:25:05' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4m7x 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":301}' 
#
_entry.id    4M7X 
#
_exptl.entry_id    4M7X 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4M7X 
_cell.length_a            56.92 
_cell.length_b            136.53 
_cell.length_c            73.62 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4M7X 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B O2B ADP . A ADP 301 1_555 C MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? 
metalc ? metalc2 C MG MG . A MG 302 1_555 P OAF 27Q . A 27Q 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.944 ? 
metalc ? metalc3 C MG MG . A MG 302 1_555 Q O HOH . A HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? 
metalc ? metalc4 C MG MG . A MG 302 1_555 Q O HOH . A HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? 
metalc ? metalc5 C MG MG . A MG 302 1_555 Q O HOH . A HOH 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? 
metalc ? metalc6 C MG MG . A MG 302 1_555 Q O HOH . A HOH 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 59 n n 
PB O2B ADP sing 60 n n 
PB O3B ADP sing 61 n n 
PB O3A ADP sing 62 n n 
O2B HOB2 ADP sing 63 n n 
O3B HOB3 ADP sing 64 n n 
PA O1A ADP doub 65 n n 
PA O2A ADP sing 66 n n 
PA O3A ADP sing 67 n n 
PA O5' ADP sing 68 n n 
O2A HOA2 ADP sing 69 n n 
O5' C5' ADP sing 70 n n 
C5' C4' ADP sing 71 n n 
C5' "H5'1" ADP sing 72 n n 
C5' "H5'2" ADP sing 73 n n 
C4' O4' ADP sing 74 n n 
C4' C3' ADP sing 75 n n 
C4' H4' ADP sing 76 n n 
O4' C1' ADP sing 77 n n 
C3' O3' ADP sing 78 n n 
C3' C2' ADP sing 79 n n 
C3' H3' ADP sing 80 n n 
O3' HO3' ADP sing 81 n n 
C2' O2' ADP sing 82 n n 
C2' C1' ADP sing 83 n n 
C2' H2' ADP sing 84 n n 
O2' HO2' ADP sing 85 n n 
C1' N9 ADP sing 86 n n 
C1' H1' ADP sing 87 n n 
N9 C8 ADP sing 88 n y 
N9 C4 ADP sing 89 n y 
C8 N7 ADP doub 90 n y 
C8 H8 ADP sing 91 n n 
N7 C5 ADP sing 92 n y 
C5 C6 ADP sing 93 n y 
C5 C4 ADP doub 94 n y 
C6 N6 ADP sing 95 n n 
C6 N1 ADP doub 96 n y 
N6 HN61 ADP sing 97 n n 
N6 HN62 ADP sing 98 n n 
N1 C2 ADP sing 99 n y 
C2 N3 ADP doub 100 n y 
C2 H2 ADP sing 101 n n 
N3 C4 ADP sing 102 n y 
#
_atom_sites.entry_id                     4M7X 
_atom_sites.fract_transf_matrix[1][1]    0.017569 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007324 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013583 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ADP A 1 301 1 ADP ADP . 
C 3 MG A 1 302 1 MG MG . 
D 4 UNX A 1 303 2 UNX UNX . 
E 4 UNX A 1 304 3 UNX UNX . 
F 4 UNX A 1 305 4 UNX UNX . 
G 4 UNX A 1 306 5 UNX UNX . 
H 4 UNX A 1 307 6 UNX UNX . 
I 4 UNX A 1 308 7 UNX UNX . 
J 4 UNX A 1 309 8 UNX UNX . 
K 4 UNX A 1 310 9 UNX UNX . 
L 4 UNX A 1 311 10 UNX UNX . 
M 4 UNX A 1 312 11 UNX UNX . 
N 4 UNX A 1 313 12 UNX UNX . 
O 4 UNX A 1 314 13 UNX UNX . 
P 5 27Q A 1 315 374 27Q 27Q . 
Q 6 HOH A 1 401 1 HOH HOH . 
Q 6 HOH A 2 402 2 HOH HOH . 
Q 6 HOH A 3 403 3 HOH HOH . 
Q 6 HOH A 4 404 4 HOH HOH . 
Q 6 HOH A 5 405 5 HOH HOH . 
Q 6 HOH A 6 406 6 HOH HOH . 
Q 6 HOH A 7 407 7 HOH HOH . 
Q 6 HOH A 8 408 8 HOH HOH . 
Q 6 HOH A 9 409 9 HOH HOH . 
Q 6 HOH A 10 410 12 HOH HOH . 
Q 6 HOH A 11 411 13 HOH HOH . 
Q 6 HOH A 12 412 14 HOH HOH . 
Q 6 HOH A 13 413 16 HOH HOH . 
Q 6 HOH A 14 414 17 HOH HOH . 
Q 6 HOH A 15 415 18 HOH HOH . 
Q 6 HOH A 16 416 19 HOH HOH . 
Q 6 HOH A 17 417 20 HOH HOH . 
Q 6 HOH A 18 418 21 HOH HOH . 
Q 6 HOH A 19 419 22 HOH HOH . 
Q 6 HOH A 20 420 25 HOH HOH . 
Q 6 HOH A 21 421 26 HOH HOH . 
Q 6 HOH A 22 422 27 HOH HOH . 
Q 6 HOH A 23 423 28 HOH HOH . 
Q 6 HOH A 24 424 29 HOH HOH . 
Q 6 HOH A 25 425 30 HOH HOH . 
Q 6 HOH A 26 426 31 HOH HOH . 
Q 6 HOH A 27 427 32 HOH HOH . 
Q 6 HOH A 28 428 33 HOH HOH . 
Q 6 HOH A 29 429 34 HOH HOH . 
Q 6 HOH A 30 430 35 HOH HOH . 
Q 6 HOH A 31 431 36 HOH HOH . 
Q 6 HOH A 32 432 37 HOH HOH . 
Q 6 HOH A 33 433 38 HOH HOH . 
Q 6 HOH A 34 434 40 HOH HOH . 
Q 6 HOH A 35 435 42 HOH HOH . 
Q 6 HOH A 36 436 43 HOH HOH . 
Q 6 HOH A 37 437 44 HOH HOH . 
Q 6 HOH A 38 438 45 HOH HOH . 
Q 6 HOH A 39 439 47 HOH HOH . 
Q 6 HOH A 40 440 48 HOH HOH . 
Q 6 HOH A 41 441 49 HOH HOH . 
Q 6 HOH A 42 442 50 HOH HOH . 
Q 6 HOH A 43 443 51 HOH HOH . 
Q 6 HOH A 44 444 53 HOH HOH . 
Q 6 HOH A 45 445 54 HOH HOH . 
Q 6 HOH A 46 446 56 HOH HOH . 
Q 6 HOH A 47 447 57 HOH HOH . 
Q 6 HOH A 48 448 58 HOH HOH . 
Q 6 HOH A 49 449 59 HOH HOH . 
Q 6 HOH A 50 450 60 HOH HOH . 
Q 6 HOH A 51 451 61 HOH HOH . 
Q 6 HOH A 52 452 62 HOH HOH . 
Q 6 HOH A 53 453 63 HOH HOH . 
Q 6 HOH A 54 454 64 HOH HOH . 
Q 6 HOH A 55 455 65 HOH HOH . 
Q 6 HOH A 56 456 66 HOH HOH . 
Q 6 HOH A 57 457 68 HOH HOH . 
Q 6 HOH A 58 458 69 HOH HOH . 
Q 6 HOH A 59 459 70 HOH HOH . 
Q 6 HOH A 60 460 71 HOH HOH . 
Q 6 HOH A 61 461 72 HOH HOH . 
Q 6 HOH A 62 462 73 HOH HOH . 
Q 6 HOH A 63 463 74 HOH HOH . 
Q 6 HOH A 64 464 75 HOH HOH . 
Q 6 HOH A 65 465 76 HOH HOH . 
Q 6 HOH A 66 466 77 HOH HOH . 
Q 6 HOH A 67 467 78 HOH HOH . 
Q 6 HOH A 68 468 79 HOH HOH . 
Q 6 HOH A 69 469 80 HOH HOH . 
Q 6 HOH A 70 470 81 HOH HOH . 
Q 6 HOH A 71 471 82 HOH HOH . 
Q 6 HOH A 72 472 83 HOH HOH . 
Q 6 HOH A 73 473 84 HOH HOH . 
Q 6 HOH A 74 474 86 HOH HOH . 
Q 6 HOH A 75 475 87 HOH HOH . 
Q 6 HOH A 76 476 88 HOH HOH . 
Q 6 HOH A 77 477 89 HOH HOH . 
Q 6 HOH A 78 478 90 HOH HOH . 
Q 6 HOH A 79 479 91 HOH HOH . 
Q 6 HOH A 80 480 92 HOH HOH . 
Q 6 HOH A 81 481 93 HOH HOH . 
Q 6 HOH A 82 482 94 HOH HOH . 
Q 6 HOH A 83 483 95 HOH HOH . 
Q 6 HOH A 84 484 96 HOH HOH . 
Q 6 HOH A 85 485 98 HOH HOH . 
Q 6 HOH A 86 486 99 HOH HOH . 
Q 6 HOH A 87 487 100 HOH HOH . 
Q 6 HOH A 88 488 101 HOH HOH . 
Q 6 HOH A 89 489 103 HOH HOH . 
Q 6 HOH A 90 490 104 HOH HOH . 
Q 6 HOH A 91 491 106 HOH HOH . 
Q 6 HOH A 92 492 107 HOH HOH . 
Q 6 HOH A 93 493 109 HOH HOH . 
Q 6 HOH A 94 494 111 HOH HOH . 
Q 6 HOH A 95 495 113 HOH HOH . 
Q 6 HOH A 96 496 114 HOH HOH . 
Q 6 HOH A 97 497 115 HOH HOH . 
Q 6 HOH A 98 498 117 HOH HOH . 
Q 6 HOH A 99 499 118 HOH HOH . 
Q 6 HOH A 100 500 120 HOH HOH . 
Q 6 HOH A 101 501 121 HOH HOH . 
Q 6 HOH A 102 502 125 HOH HOH . 
Q 6 HOH A 103 503 126 HOH HOH . 
Q 6 HOH A 104 504 127 HOH HOH . 
Q 6 HOH A 105 505 128 HOH HOH . 
Q 6 HOH A 106 506 129 HOH HOH . 
Q 6 HOH A 107 507 130 HOH HOH . 
Q 6 HOH A 108 508 132 HOH HOH . 
Q 6 HOH A 109 509 133 HOH HOH . 
Q 6 HOH A 110 510 135 HOH HOH . 
Q 6 HOH A 111 511 136 HOH HOH . 
Q 6 HOH A 112 512 137 HOH HOH . 
Q 6 HOH A 113 513 139 HOH HOH . 
Q 6 HOH A 114 514 140 HOH HOH . 
Q 6 HOH A 115 515 141 HOH HOH . 
Q 6 HOH A 116 516 143 HOH HOH . 
Q 6 HOH A 117 517 146 HOH HOH . 
Q 6 HOH A 118 518 147 HOH HOH . 
Q 6 HOH A 119 519 148 HOH HOH . 
Q 6 HOH A 120 520 149 HOH HOH . 
Q 6 HOH A 121 521 151 HOH HOH . 
Q 6 HOH A 122 522 152 HOH HOH . 
Q 6 HOH A 123 523 153 HOH HOH . 
Q 6 HOH A 124 524 154 HOH HOH . 
Q 6 HOH A 125 525 155 HOH HOH . 
Q 6 HOH A 126 526 156 HOH HOH . 
Q 6 HOH A 127 527 157 HOH HOH . 
Q 6 HOH A 128 528 158 HOH HOH . 
Q 6 HOH A 129 529 159 HOH HOH . 
Q 6 HOH A 130 530 160 HOH HOH . 
Q 6 HOH A 131 531 161 HOH HOH . 
Q 6 HOH A 132 532 162 HOH HOH . 
Q 6 HOH A 133 533 164 HOH HOH . 
Q 6 HOH A 134 534 165 HOH HOH . 
Q 6 HOH A 135 535 166 HOH HOH . 
Q 6 HOH A 136 536 167 HOH HOH . 
Q 6 HOH A 137 537 168 HOH HOH . 
Q 6 HOH A 138 538 169 HOH HOH . 
Q 6 HOH A 139 539 170 HOH HOH . 
Q 6 HOH A 140 540 171 HOH HOH . 
Q 6 HOH A 141 541 172 HOH HOH . 
Q 6 HOH A 142 542 173 HOH HOH . 
Q 6 HOH A 143 543 174 HOH HOH . 
Q 6 HOH A 144 544 175 HOH HOH . 
Q 6 HOH A 145 545 176 HOH HOH . 
Q 6 HOH A 146 546 177 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . B 2 20.455 18.153 2.563 1 20.36 ? PB ADP 301 A 1 
HETATM 2 O O1B ADP . . . B 2 20.543 17.001 3.563 1 22.59 ? O1B ADP 301 A 1 
HETATM 3 O O2B ADP . . . B 2 19.15 18.928 2.577 1 19.26 ? O2B ADP 301 A 1 
HETATM 4 O O3B ADP . . . B 2 21.67 19.04 2.674 1 20.21 ? O3B ADP 301 A 1 
HETATM 5 P PA ADP . . . B 2 20.481 17.96 -0.411 1 18.18 ? PA ADP 301 A 1 
HETATM 6 O O1A ADP . . . B 2 21.078 19.348 -0.457 1 18.08 ? O1A ADP 301 A 1 
HETATM 7 O O2A ADP . . . B 2 19.158 17.842 -1.048 1 18.8 ? O2A ADP 301 A 1 
HETATM 8 O O3A ADP . . . B 2 20.521 17.504 1.08 1 18.51 ? O3A ADP 301 A 1 
HETATM 9 O O5' ADP . . . B 2 21.455 16.872 -1.005 1 16.82 ? O5' ADP 301 A 1 
HETATM 10 C C5' ADP . . . B 2 22.761 16.661 -0.436 1 18.33 ? C5' ADP 301 A 1 
HETATM 11 C C4' ADP . . . B 2 23.539 15.77 -1.396 1 18.34 ? C4' ADP 301 A 1 
HETATM 12 O O4' ADP . . . B 2 23.689 16.413 -2.673 1 19.74 ? O4' ADP 301 A 1 
HETATM 13 C C3' ADP . . . B 2 24.954 15.423 -0.971 1 20.1 ? C3' ADP 301 A 1 
HETATM 14 O O3' ADP . . . B 2 24.962 14.385 0.001 1 19.61 ? O3' ADP 301 A 1 
HETATM 15 C C2' ADP . . . B 2 25.599 15.083 -2.304 1 18.36 ? C2' ADP 301 A 1 
HETATM 16 O O2' ADP . . . B 2 25.362 13.733 -2.697 1 19.08 ? O2' ADP 301 A 1 
HETATM 17 C C1' ADP . . . B 2 24.91 16.035 -3.266 1 18.49 ? C1' ADP 301 A 1 
HETATM 18 N N9 ADP . . . B 2 25.651 17.283 -3.594 1 19.25 ? N9 ADP 301 A 1 
HETATM 19 C C8 ADP . . . B 2 25.276 17.992 -4.681 1 21.37 ? C8 ADP 301 A 1 
HETATM 20 N N7 ADP . . . B 2 26.13 19.034 -4.84 1 21.34 ? N7 ADP 301 A 1 
HETATM 21 C C5 ADP . . . B 2 27.02 19.001 -3.855 1 20.73 ? C5 ADP 301 A 1 
HETATM 22 C C6 ADP . . . B 2 28.194 19.777 -3.444 1 23.44 ? C6 ADP 301 A 1 
HETATM 23 N N6 ADP . . . B 2 28.548 20.888 -4.146 1 31.72 ? N6 ADP 301 A 1 
HETATM 24 N N1 ADP . . . B 2 28.875 19.386 -2.371 1 24.89 ? N1 ADP 301 A 1 
HETATM 25 C C2 ADP . . . B 2 28.552 18.29 -1.654 1 24.79 ? C2 ADP 301 A 1 
HETATM 26 N N3 ADP . . . B 2 27.49 17.513 -1.948 1 21.32 ? N3 ADP 301 A 1 
HETATM 27 C C4 ADP . . . B 2 26.74 17.815 -3.036 1 20.74 ? C4 ADP 301 A 1 
#
_model_server_stats.io_time_ms              23 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           267 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           27 
#