data_4M7Y # _model_server_result.job_id KWchPDr1aiKIJid7WKVAYQ _model_server_result.datetime_utc '2024-10-10 15:22:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4m7y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 4M7Y # _exptl.entry_id 4M7Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 368.363 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N~3~-[(2R)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-N-pentyl-beta-alaninamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.17 _cell.angle_gamma 90 _cell.entry_id 4M7Y _cell.length_a 141.96 _cell.length_b 56.13 _cell.length_c 68.42 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4M7Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 Q N N # _chem_comp.formula 'C14 H29 N2 O7 P' _chem_comp.formula_weight 368.363 _chem_comp.id 2GH _chem_comp.mon_nstd_flag . _chem_comp.name N~3~-[(2R)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-N-pentyl-beta-alaninamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA CAJ 2GH sing 1 n n CAJ CAK 2GH sing 2 n n CAK CAL 2GH sing 3 n n CAL CAM 2GH sing 4 n n CAM NAQ 2GH sing 5 n n NAQ CAT 2GH sing 6 n n CAT CAO 2GH sing 7 n n CAT OAD 2GH doub 8 n n CAO CAN 2GH sing 9 n n CAN NAR 2GH sing 10 n n NAR CAU 2GH sing 11 n n OAG CAV 2GH sing 12 n n CAU OAE 2GH doub 13 n n CAU CAV 2GH sing 14 n n CAV CAW 2GH sing 15 n n OAF PAX 2GH doub 16 n n CAC CAW 2GH sing 17 n n CAW CAP 2GH sing 18 n n CAW CAB 2GH sing 19 n n CAP OAS 2GH sing 20 n n PAX OAS 2GH sing 21 n n PAX OAI 2GH sing 22 n n PAX OAH 2GH sing 23 n n OAH H1 2GH sing 24 n n OAI H2 2GH sing 25 n n CAP H3 2GH sing 26 n n CAP H4 2GH sing 27 n n CAB H5 2GH sing 28 n n CAB H6 2GH sing 29 n n CAB H7 2GH sing 30 n n CAC H8 2GH sing 31 n n CAC H9 2GH sing 32 n n CAC H10 2GH sing 33 n n CAV H11 2GH sing 34 n n OAG H12 2GH sing 35 n n NAR H13 2GH sing 36 n n CAN H14 2GH sing 37 n n CAN H15 2GH sing 38 n n CAO H16 2GH sing 39 n n CAO H17 2GH sing 40 n n NAQ H18 2GH sing 41 n n CAM H19 2GH sing 42 n n CAM H20 2GH sing 43 n n CAL H21 2GH sing 44 n n CAL H22 2GH sing 45 n n CAK H23 2GH sing 46 n n CAK H24 2GH sing 47 n n CAJ H25 2GH sing 48 n n CAJ H26 2GH sing 49 n n CAA H27 2GH sing 50 n n CAA H28 2GH sing 51 n n CAA H29 2GH sing 52 n n # _atom_sites.entry_id 4M7Y _atom_sites.fract_transf_matrix[1][1] 0.007044 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00139 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017816 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014898 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 2GH A 1 301 301 2GH 2GH . D 3 ADP A 1 302 302 ADP ADP . E 4 PO4 A 1 303 4 PO4 PO4 . F 4 PO4 A 1 304 6 PO4 PO4 . G 5 UNX A 1 305 1 UNX UNX . H 5 UNX A 1 306 5 UNX UNX . I 5 UNX A 1 307 7 UNX UNX . J 5 UNX A 1 308 8 UNX UNX . K 5 UNX A 1 309 13 UNX UNX . L 5 UNX A 1 310 14 UNX UNX . M 5 UNX A 1 311 16 UNX UNX . N 5 UNX A 1 312 17 UNX UNX . O 5 UNX A 1 313 22 UNX UNX . P 5 UNX A 1 314 23 UNX UNX . Q 2 2GH B 1 301 301 2GH 2GH . R 3 ADP B 1 302 302 ADP ADP . S 4 PO4 B 1 303 2 PO4 PO4 . T 4 PO4 B 1 304 3 PO4 PO4 . U 4 PO4 B 1 305 5 PO4 PO4 . V 5 UNX B 1 306 7 UNX UNX . W 5 UNX B 1 307 9 UNX UNX . X 5 UNX B 1 308 10 UNX UNX . Y 5 UNX B 1 309 11 UNX UNX . Z 5 UNX B 1 310 12 UNX UNX . AA 4 PO4 B 1 311 7 PO4 PO4 . BA 4 PO4 B 1 312 8 PO4 PO4 . CA 5 UNX B 1 313 4 UNX UNX . DA 5 UNX B 1 314 6 UNX UNX . EA 5 UNX B 1 315 11 UNX UNX . FA 5 UNX B 1 316 12 UNX UNX . GA 5 UNX B 1 317 15 UNX UNX . HA 5 UNX B 1 318 18 UNX UNX . IA 5 UNX B 1 319 19 UNX UNX . JA 6 HOH A 1 401 2 HOH HOH . JA 6 HOH A 2 402 4 HOH HOH . JA 6 HOH A 3 403 7 HOH HOH . JA 6 HOH A 4 404 9 HOH HOH . JA 6 HOH A 5 405 10 HOH HOH . JA 6 HOH A 6 406 13 HOH HOH . JA 6 HOH A 7 407 14 HOH HOH . JA 6 HOH A 8 408 15 HOH HOH . JA 6 HOH A 9 409 16 HOH HOH . JA 6 HOH A 10 410 19 HOH HOH . JA 6 HOH A 11 411 20 HOH HOH . JA 6 HOH A 12 412 21 HOH HOH . JA 6 HOH A 13 413 22 HOH HOH . JA 6 HOH A 14 414 23 HOH HOH . JA 6 HOH A 15 415 24 HOH HOH . JA 6 HOH A 16 416 25 HOH HOH . JA 6 HOH A 17 417 27 HOH HOH . JA 6 HOH A 18 418 28 HOH HOH . JA 6 HOH A 19 419 29 HOH HOH . JA 6 HOH A 20 420 36 HOH HOH . JA 6 HOH A 21 421 37 HOH HOH . JA 6 HOH A 22 422 38 HOH HOH . JA 6 HOH A 23 423 39 HOH HOH . JA 6 HOH A 24 424 40 HOH HOH . JA 6 HOH A 25 425 42 HOH HOH . JA 6 HOH A 26 426 47 HOH HOH . JA 6 HOH A 27 427 49 HOH HOH . JA 6 HOH A 28 428 50 HOH HOH . JA 6 HOH A 29 429 51 HOH HOH . JA 6 HOH A 30 430 52 HOH HOH . JA 6 HOH A 31 431 53 HOH HOH . JA 6 HOH A 32 432 56 HOH HOH . JA 6 HOH A 33 433 60 HOH HOH . JA 6 HOH A 34 434 62 HOH HOH . JA 6 HOH A 35 435 63 HOH HOH . JA 6 HOH A 36 436 65 HOH HOH . JA 6 HOH A 37 437 66 HOH HOH . JA 6 HOH A 38 438 70 HOH HOH . JA 6 HOH A 39 439 71 HOH HOH . JA 6 HOH A 40 440 72 HOH HOH . JA 6 HOH A 41 441 73 HOH HOH . JA 6 HOH A 42 442 80 HOH HOH . JA 6 HOH A 43 443 81 HOH HOH . JA 6 HOH A 44 444 82 HOH HOH . JA 6 HOH A 45 445 83 HOH HOH . JA 6 HOH A 46 446 85 HOH HOH . JA 6 HOH A 47 447 87 HOH HOH . JA 6 HOH A 48 448 89 HOH HOH . JA 6 HOH A 49 449 90 HOH HOH . JA 6 HOH A 50 450 96 HOH HOH . JA 6 HOH A 51 451 98 HOH HOH . JA 6 HOH A 52 452 102 HOH HOH . JA 6 HOH A 53 453 110 HOH HOH . JA 6 HOH A 54 454 124 HOH HOH . JA 6 HOH A 55 455 125 HOH HOH . JA 6 HOH A 56 456 126 HOH HOH . JA 6 HOH A 57 457 127 HOH HOH . JA 6 HOH A 58 458 128 HOH HOH . JA 6 HOH A 59 459 129 HOH HOH . JA 6 HOH A 60 460 130 HOH HOH . JA 6 HOH A 61 461 131 HOH HOH . JA 6 HOH A 62 462 133 HOH HOH . JA 6 HOH A 63 463 135 HOH HOH . JA 6 HOH A 64 464 136 HOH HOH . JA 6 HOH A 65 465 137 HOH HOH . JA 6 HOH A 66 466 138 HOH HOH . JA 6 HOH A 67 467 140 HOH HOH . JA 6 HOH A 68 468 141 HOH HOH . JA 6 HOH A 69 469 142 HOH HOH . JA 6 HOH A 70 470 143 HOH HOH . JA 6 HOH A 71 471 144 HOH HOH . JA 6 HOH A 72 472 145 HOH HOH . JA 6 HOH A 73 473 146 HOH HOH . JA 6 HOH A 74 474 147 HOH HOH . JA 6 HOH A 75 475 148 HOH HOH . JA 6 HOH A 76 476 149 HOH HOH . JA 6 HOH A 77 477 150 HOH HOH . JA 6 HOH A 78 478 151 HOH HOH . JA 6 HOH A 79 479 153 HOH HOH . JA 6 HOH A 80 480 154 HOH HOH . JA 6 HOH A 81 481 155 HOH HOH . JA 6 HOH A 82 482 156 HOH HOH . JA 6 HOH A 83 483 157 HOH HOH . JA 6 HOH A 84 484 160 HOH HOH . JA 6 HOH A 85 485 162 HOH HOH . JA 6 HOH A 86 486 163 HOH HOH . JA 6 HOH A 87 487 164 HOH HOH . JA 6 HOH A 88 488 165 HOH HOH . JA 6 HOH A 89 489 179 HOH HOH . JA 6 HOH A 90 490 184 HOH HOH . JA 6 HOH A 91 491 185 HOH HOH . JA 6 HOH A 92 492 186 HOH HOH . JA 6 HOH A 93 493 187 HOH HOH . JA 6 HOH A 94 494 188 HOH HOH . JA 6 HOH A 95 495 191 HOH HOH . JA 6 HOH A 96 496 193 HOH HOH . JA 6 HOH A 97 497 194 HOH HOH . JA 6 HOH A 98 498 195 HOH HOH . JA 6 HOH A 99 499 196 HOH HOH . JA 6 HOH A 100 500 197 HOH HOH . JA 6 HOH A 101 501 201 HOH HOH . JA 6 HOH A 102 502 202 HOH HOH . JA 6 HOH A 103 503 203 HOH HOH . JA 6 HOH A 104 504 204 HOH HOH . JA 6 HOH A 105 505 207 HOH HOH . JA 6 HOH A 106 506 211 HOH HOH . JA 6 HOH A 107 507 213 HOH HOH . JA 6 HOH A 108 508 214 HOH HOH . JA 6 HOH A 109 509 215 HOH HOH . JA 6 HOH A 110 510 217 HOH HOH . JA 6 HOH A 111 511 218 HOH HOH . JA 6 HOH A 112 512 219 HOH HOH . JA 6 HOH A 113 513 220 HOH HOH . JA 6 HOH A 114 514 221 HOH HOH . JA 6 HOH A 115 515 222 HOH HOH . JA 6 HOH A 116 516 232 HOH HOH . JA 6 HOH A 117 517 233 HOH HOH . KA 6 HOH B 1 401 5 HOH HOH . KA 6 HOH B 2 402 6 HOH HOH . KA 6 HOH B 3 403 18 HOH HOH . KA 6 HOH B 4 404 26 HOH HOH . KA 6 HOH B 5 405 31 HOH HOH . KA 6 HOH B 6 406 32 HOH HOH . KA 6 HOH B 7 407 34 HOH HOH . KA 6 HOH B 8 408 35 HOH HOH . KA 6 HOH B 9 409 41 HOH HOH . KA 6 HOH B 10 410 43 HOH HOH . KA 6 HOH B 11 411 45 HOH HOH . KA 6 HOH B 12 412 46 HOH HOH . KA 6 HOH B 13 413 48 HOH HOH . KA 6 HOH B 14 414 54 HOH HOH . KA 6 HOH B 15 415 55 HOH HOH . KA 6 HOH B 16 416 59 HOH HOH . KA 6 HOH B 17 417 61 HOH HOH . KA 6 HOH B 18 418 64 HOH HOH . KA 6 HOH B 19 419 68 HOH HOH . KA 6 HOH B 20 420 74 HOH HOH . KA 6 HOH B 21 421 77 HOH HOH . KA 6 HOH B 22 422 79 HOH HOH . KA 6 HOH B 23 423 84 HOH HOH . KA 6 HOH B 24 424 86 HOH HOH . KA 6 HOH B 25 425 91 HOH HOH . KA 6 HOH B 26 426 92 HOH HOH . KA 6 HOH B 27 427 93 HOH HOH . KA 6 HOH B 28 428 94 HOH HOH . KA 6 HOH B 29 429 95 HOH HOH . KA 6 HOH B 30 430 97 HOH HOH . KA 6 HOH B 31 431 100 HOH HOH . KA 6 HOH B 32 432 101 HOH HOH . KA 6 HOH B 33 433 105 HOH HOH . KA 6 HOH B 34 434 107 HOH HOH . KA 6 HOH B 35 435 112 HOH HOH . KA 6 HOH B 36 436 114 HOH HOH . KA 6 HOH B 37 437 116 HOH HOH . KA 6 HOH B 38 438 132 HOH HOH . KA 6 HOH B 39 439 158 HOH HOH . KA 6 HOH B 40 440 159 HOH HOH . KA 6 HOH B 41 441 161 HOH HOH . KA 6 HOH B 42 442 166 HOH HOH . KA 6 HOH B 43 443 167 HOH HOH . KA 6 HOH B 44 444 168 HOH HOH . KA 6 HOH B 45 445 169 HOH HOH . KA 6 HOH B 46 446 170 HOH HOH . KA 6 HOH B 47 447 171 HOH HOH . KA 6 HOH B 48 448 172 HOH HOH . KA 6 HOH B 49 449 173 HOH HOH . KA 6 HOH B 50 450 174 HOH HOH . KA 6 HOH B 51 451 175 HOH HOH . KA 6 HOH B 52 452 177 HOH HOH . KA 6 HOH B 53 453 178 HOH HOH . KA 6 HOH B 54 454 181 HOH HOH . KA 6 HOH B 55 455 182 HOH HOH . KA 6 HOH B 56 456 190 HOH HOH . KA 6 HOH B 57 457 192 HOH HOH . KA 6 HOH B 58 458 198 HOH HOH . KA 6 HOH B 59 459 199 HOH HOH . KA 6 HOH B 60 460 200 HOH HOH . KA 6 HOH B 61 461 205 HOH HOH . KA 6 HOH B 62 462 206 HOH HOH . KA 6 HOH B 63 463 209 HOH HOH . KA 6 HOH B 64 464 210 HOH HOH . KA 6 HOH B 65 465 212 HOH HOH . KA 6 HOH B 66 466 223 HOH HOH . KA 6 HOH B 67 467 224 HOH HOH . KA 6 HOH B 68 468 225 HOH HOH . KA 6 HOH B 69 469 226 HOH HOH . KA 6 HOH B 70 470 227 HOH HOH . KA 6 HOH B 71 471 228 HOH HOH . KA 6 HOH B 72 472 229 HOH HOH . KA 6 HOH B 73 473 230 HOH HOH . KA 6 HOH B 74 474 231 HOH HOH . KA 6 HOH B 75 475 234 HOH HOH . KA 6 HOH B 76 476 235 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAH 2GH . . . C 2 -9.172 23.211 -21.431 1 26.89 ? OAH 2GH 301 A 1 HETATM 2 P PAX 2GH . . . C 2 -7.775 23.425 -22.173 1 26.18 ? PAX 2GH 301 A 1 HETATM 3 O OAI 2GH . . . C 2 -7.031 24.738 -21.614 1 26.61 ? OAI 2GH 301 A 1 HETATM 4 O OAF 2GH . . . C 2 -7.859 23.465 -23.657 1 24.95 ? OAF 2GH 301 A 1 HETATM 5 O OAS 2GH . . . C 2 -6.854 22.225 -21.653 1 25.37 ? OAS 2GH 301 A 1 HETATM 6 C CAP 2GH . . . C 2 -5.59 22.057 -22.259 1 26.54 ? CAP 2GH 301 A 1 HETATM 7 C CAW 2GH . . . C 2 -5.481 20.661 -22.881 1 26.33 ? CAW 2GH 301 A 1 HETATM 8 C CAB 2GH . . . C 2 -5.618 19.639 -21.723 1 26.53 ? CAB 2GH 301 A 1 HETATM 9 C CAC 2GH . . . C 2 -4.1 20.543 -23.585 1 28.02 ? CAC 2GH 301 A 1 HETATM 10 C CAV 2GH . . . C 2 -6.67 20.45 -23.927 1 23.54 ? CAV 2GH 301 A 1 HETATM 11 O OAG 2GH . . . C 2 -6.653 21.537 -24.883 1 23.85 ? OAG 2GH 301 A 1 HETATM 12 C CAU 2GH . . . C 2 -6.544 19.099 -24.673 1 22.73 ? CAU 2GH 301 A 1 HETATM 13 O OAE 2GH . . . C 2 -6.523 18.017 -24.048 1 23.58 ? OAE 2GH 301 A 1 HETATM 14 N NAR 2GH . . . C 2 -6.481 19.2 -26.014 1 21.56 ? NAR 2GH 301 A 1 HETATM 15 C CAN 2GH . . . C 2 -6.386 18.012 -26.881 1 24.32 ? CAN 2GH 301 A 1 HETATM 16 C CAO 2GH . . . C 2 -4.927 17.511 -26.893 1 26.51 ? CAO 2GH 301 A 1 HETATM 17 C CAT 2GH . . . C 2 -4.9 16.113 -27.513 1 30.53 ? CAT 2GH 301 A 1 HETATM 18 O OAD 2GH . . . C 2 -5.225 15.134 -26.849 1 30.36 ? OAD 2GH 301 A 1 HETATM 19 N NAQ 2GH . . . C 2 -4.592 16.049 -28.794 1 34.02 ? NAQ 2GH 301 A 1 HETATM 20 C CAM 2GH . . . C 2 -4.572 14.731 -29.502 1 38.94 ? CAM 2GH 301 A 1 HETATM 21 C CAL 2GH . . . C 2 -4.847 14.916 -30.981 1 39.55 ? CAL 2GH 301 A 1 HETATM 22 C CAK 2GH . . . C 2 -3.606 15.508 -31.643 1 41.63 ? CAK 2GH 301 A 1 HETATM 23 C CAJ 2GH . . . C 2 -3.201 14.728 -32.883 1 44.73 ? CAJ 2GH 301 A 1 HETATM 24 C CAA 2GH . . . C 2 -1.696 14.955 -33.23 1 46 ? CAA 2GH 301 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 24 #