data_4M7Z # _model_server_result.job_id 4kMpb9K07UNicj9mSn2f0g _model_server_result.datetime_utc '2025-07-02 11:06:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4m7z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":401}' # _entry.id 4M7Z # _exptl.entry_id 4M7Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4M7Z _cell.length_a 85.298 _cell.length_b 111.988 _cell.length_c 156.925 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4M7Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,G,H,I,J,K,L,M,R,S,X,Z 1 1 B,D,N,O,P,Q,T,U,V,W,Y,AA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 B CYS 22 1_555 A SG CYS 95 B CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? disulf ? disulf2 A SG CYS 145 B CYS 140 1_555 A SG CYS 200 B CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf3 B SG CYS 22 H CYS 22 1_555 B SG CYS 95 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? disulf ? disulf4 B SG CYS 145 H CYS 140 1_555 B SG CYS 200 H CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf5 C SG CYS 23 C CYS 23 1_555 C SG CYS 93 C CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? disulf ? disulf6 C SG CYS 139 C CYS 134 1_555 C SG CYS 199 C CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? disulf ? disulf7 D SG CYS 23 L CYS 23 1_555 D SG CYS 93 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? disulf ? disulf8 D SG CYS 139 L CYS 134 1_555 D SG CYS 199 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? covale ? covale1 A ND2 ASN 88 B ASN 85 1_555 E C1 NAG . B NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? covale ? covale2 B ND2 ASN 88 H ASN 85 1_555 N C1 NAG . H NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? metalc ? metalc1 A OD2 ASP 58 B ASP 58 1_555 M CA CA . B CA 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.501 ? metalc ? metalc2 A OD1 ASP 58 B ASP 58 1_555 M CA CA . B CA 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.88 ? metalc ? metalc3 H O5 PG4 . B PG4 404 1_555 M CA CA . B CA 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? metalc ? metalc4 H O3 PG4 . B PG4 404 1_555 M CA CA . B CA 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc5 H O4 PG4 . B PG4 404 1_555 M CA CA . B CA 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.597 ? metalc ? metalc6 H O2 PG4 . B PG4 404 1_555 M CA CA . B CA 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.745 ? metalc ? metalc7 B OD2 ASP 58 H ASP 58 1_555 Q CA CA . H CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.633 ? metalc ? metalc8 B OD1 ASP 58 H ASP 58 1_555 Q CA CA . H CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.85 ? metalc ? metalc9 O O5 PG4 . H PG4 402 1_555 Q CA CA . H CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? metalc ? metalc10 O O4 PG4 . H PG4 402 1_555 Q CA CA . H CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.538 ? metalc ? metalc11 O O3 PG4 . H PG4 402 1_555 Q CA CA . H CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.609 ? metalc ? metalc12 O O2 PG4 . H PG4 402 1_555 Q CA CA . H CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.635 ? metalc ? metalc13 C OE1 GLU 84 C GLU 79 1_555 W CA CA . L CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.02 ? metalc ? metalc14 C OE2 GLU 86 C GLU 81 1_555 W CA CA . L CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc15 C OE1 GLU 86 C GLU 81 1_555 W CA CA . L CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.475 ? metalc ? metalc16 D OE1 GLU 84 L GLU 79 1_555 W CA CA . L CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.49 ? metalc ? metalc17 W CA CA . L CA 304 1_555 AA O HOH . L HOH 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.162 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 237 n n C1 O1 NAG sing 238 n n C1 O5 NAG sing 239 n n C1 H1 NAG sing 240 n n C2 C3 NAG sing 241 n n C2 N2 NAG sing 242 n n C2 H2 NAG sing 243 n n C3 C4 NAG sing 244 n n C3 O3 NAG sing 245 n n C3 H3 NAG sing 246 n n C4 C5 NAG sing 247 n n C4 O4 NAG sing 248 n n C4 H4 NAG sing 249 n n C5 C6 NAG sing 250 n n C5 O5 NAG sing 251 n n C5 H5 NAG sing 252 n n C6 O6 NAG sing 253 n n C6 H61 NAG sing 254 n n C6 H62 NAG sing 255 n n C7 C8 NAG sing 256 n n C7 N2 NAG sing 257 n n C7 O7 NAG doub 258 n n C8 H81 NAG sing 259 n n C8 H82 NAG sing 260 n n C8 H83 NAG sing 261 n n N2 HN2 NAG sing 262 n n O1 HO1 NAG sing 263 n n O3 HO3 NAG sing 264 n n O4 HO4 NAG sing 265 n n O6 HO6 NAG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 4M7Z _atom_sites.fract_transf_matrix[1][1] 0.011724 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00893 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006372 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 NAG B 1 401 401 NAG NAG . F 4 PG4 B 1 402 2 PG4 PG4 . G 4 PG4 B 1 403 3 PG4 PG4 . H 4 PG4 B 1 404 5 PG4 PG4 . I 4 PG4 B 1 405 7 PG4 PG4 . J 5 PEG B 1 406 1 PEG PEG . K 5 PEG B 1 407 2 PEG PEG . L 5 PEG B 1 408 5 PEG PEG . M 6 CA B 1 409 1 CA CA . N 3 NAG H 1 401 401 NAG NAG . O 4 PG4 H 1 402 4 PG4 PG4 . P 5 PEG H 1 403 3 PEG PEG . Q 6 CA H 1 404 3 CA CA . R 4 PG4 C 1 301 6 PG4 PG4 . S 5 PEG C 1 302 8 PEG PEG . T 4 PG4 L 1 301 1 PG4 PG4 . U 4 PG4 L 1 302 8 PG4 PG4 . V 5 PEG L 1 303 7 PEG PEG . W 6 CA L 1 304 2 CA CA . X 7 HOH B 1 501 7 HOH HOH . X 7 HOH B 2 502 9 HOH HOH . X 7 HOH B 3 503 11 HOH HOH . X 7 HOH B 4 504 18 HOH HOH . X 7 HOH B 5 505 24 HOH HOH . X 7 HOH B 6 506 26 HOH HOH . X 7 HOH B 7 507 36 HOH HOH . X 7 HOH B 8 508 37 HOH HOH . X 7 HOH B 9 509 40 HOH HOH . X 7 HOH B 10 510 42 HOH HOH . X 7 HOH B 11 511 43 HOH HOH . X 7 HOH B 12 512 44 HOH HOH . X 7 HOH B 13 513 46 HOH HOH . X 7 HOH B 14 514 47 HOH HOH . X 7 HOH B 15 515 51 HOH HOH . X 7 HOH B 16 516 54 HOH HOH . X 7 HOH B 17 517 59 HOH HOH . X 7 HOH B 18 518 60 HOH HOH . X 7 HOH B 19 519 66 HOH HOH . X 7 HOH B 20 520 67 HOH HOH . X 7 HOH B 21 521 71 HOH HOH . X 7 HOH B 22 522 76 HOH HOH . X 7 HOH B 23 523 77 HOH HOH . X 7 HOH B 24 524 78 HOH HOH . X 7 HOH B 25 525 79 HOH HOH . X 7 HOH B 26 526 80 HOH HOH . X 7 HOH B 27 527 81 HOH HOH . X 7 HOH B 28 528 85 HOH HOH . X 7 HOH B 29 529 87 HOH HOH . X 7 HOH B 30 530 88 HOH HOH . X 7 HOH B 31 531 89 HOH HOH . X 7 HOH B 32 532 90 HOH HOH . X 7 HOH B 33 533 91 HOH HOH . X 7 HOH B 34 534 92 HOH HOH . X 7 HOH B 35 535 95 HOH HOH . X 7 HOH B 36 536 100 HOH HOH . X 7 HOH B 37 537 102 HOH HOH . X 7 HOH B 38 538 107 HOH HOH . X 7 HOH B 39 539 109 HOH HOH . X 7 HOH B 40 540 116 HOH HOH . X 7 HOH B 41 541 119 HOH HOH . X 7 HOH B 42 542 120 HOH HOH . X 7 HOH B 43 543 121 HOH HOH . X 7 HOH B 44 544 122 HOH HOH . Y 7 HOH H 1 501 1 HOH HOH . Y 7 HOH H 2 502 4 HOH HOH . Y 7 HOH H 3 503 5 HOH HOH . Y 7 HOH H 4 504 8 HOH HOH . Y 7 HOH H 5 505 15 HOH HOH . Y 7 HOH H 6 506 25 HOH HOH . Y 7 HOH H 7 507 27 HOH HOH . Y 7 HOH H 8 508 29 HOH HOH . Y 7 HOH H 9 509 31 HOH HOH . Y 7 HOH H 10 510 33 HOH HOH . Y 7 HOH H 11 511 45 HOH HOH . Y 7 HOH H 12 512 48 HOH HOH . Y 7 HOH H 13 513 61 HOH HOH . Y 7 HOH H 14 514 62 HOH HOH . Y 7 HOH H 15 515 65 HOH HOH . Y 7 HOH H 16 516 69 HOH HOH . Y 7 HOH H 17 517 73 HOH HOH . Y 7 HOH H 18 518 86 HOH HOH . Y 7 HOH H 19 519 108 HOH HOH . Y 7 HOH H 20 520 112 HOH HOH . Y 7 HOH H 21 521 132 HOH HOH . Y 7 HOH H 22 522 135 HOH HOH . Z 7 HOH C 1 401 2 HOH HOH . Z 7 HOH C 2 402 12 HOH HOH . Z 7 HOH C 3 403 14 HOH HOH . Z 7 HOH C 4 404 16 HOH HOH . Z 7 HOH C 5 405 17 HOH HOH . Z 7 HOH C 6 406 28 HOH HOH . Z 7 HOH C 7 407 30 HOH HOH . Z 7 HOH C 8 408 32 HOH HOH . Z 7 HOH C 9 409 35 HOH HOH . Z 7 HOH C 10 410 41 HOH HOH . Z 7 HOH C 11 411 49 HOH HOH . Z 7 HOH C 12 412 50 HOH HOH . Z 7 HOH C 13 413 52 HOH HOH . Z 7 HOH C 14 414 53 HOH HOH . Z 7 HOH C 15 415 55 HOH HOH . Z 7 HOH C 16 416 56 HOH HOH . Z 7 HOH C 17 417 63 HOH HOH . Z 7 HOH C 18 418 64 HOH HOH . Z 7 HOH C 19 419 68 HOH HOH . Z 7 HOH C 20 420 70 HOH HOH . Z 7 HOH C 21 421 72 HOH HOH . Z 7 HOH C 22 422 74 HOH HOH . Z 7 HOH C 23 423 75 HOH HOH . Z 7 HOH C 24 424 83 HOH HOH . Z 7 HOH C 25 425 84 HOH HOH . Z 7 HOH C 26 426 94 HOH HOH . Z 7 HOH C 27 427 96 HOH HOH . Z 7 HOH C 28 428 97 HOH HOH . Z 7 HOH C 29 429 103 HOH HOH . Z 7 HOH C 30 430 104 HOH HOH . Z 7 HOH C 31 431 110 HOH HOH . Z 7 HOH C 32 432 114 HOH HOH . Z 7 HOH C 33 433 124 HOH HOH . Z 7 HOH C 34 434 125 HOH HOH . Z 7 HOH C 35 435 127 HOH HOH . Z 7 HOH C 36 436 128 HOH HOH . Z 7 HOH C 37 437 129 HOH HOH . Z 7 HOH C 38 438 130 HOH HOH . AA 7 HOH L 1 401 3 HOH HOH . AA 7 HOH L 2 402 6 HOH HOH . AA 7 HOH L 3 403 10 HOH HOH . AA 7 HOH L 4 404 13 HOH HOH . AA 7 HOH L 5 405 19 HOH HOH . AA 7 HOH L 6 406 21 HOH HOH . AA 7 HOH L 7 407 22 HOH HOH . AA 7 HOH L 8 408 34 HOH HOH . AA 7 HOH L 9 409 38 HOH HOH . AA 7 HOH L 10 410 39 HOH HOH . AA 7 HOH L 11 411 58 HOH HOH . AA 7 HOH L 12 412 82 HOH HOH . AA 7 HOH L 13 413 93 HOH HOH . AA 7 HOH L 14 414 106 HOH HOH . AA 7 HOH L 15 415 113 HOH HOH . AA 7 HOH L 16 416 115 HOH HOH . AA 7 HOH L 17 417 117 HOH HOH . AA 7 HOH L 18 418 123 HOH HOH . AA 7 HOH L 19 419 126 HOH HOH . AA 7 HOH L 20 420 134 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . N 3 -9.424 12.154 1.256 1 37.13 ? C1 NAG 401 H 1 HETATM 2 C C2 NAG . . . N 3 -10.876 12.618 1.268 1 37.13 ? C2 NAG 401 H 1 HETATM 3 C C3 NAG . . . N 3 -11.478 12.49 2.662 1 37.13 ? C3 NAG 401 H 1 HETATM 4 C C4 NAG . . . N 3 -11.211 11.108 3.248 1 37.13 ? C4 NAG 401 H 1 HETATM 5 C C5 NAG . . . N 3 -9.739 10.735 3.117 1 37.13 ? C5 NAG 401 H 1 HETATM 6 C C6 NAG . . . N 3 -9.485 9.324 3.633 1 37.13 ? C6 NAG 401 H 1 HETATM 7 C C7 NAG . . . N 3 -12.097 14.68 0.892 1 37.13 ? C7 NAG 401 H 1 HETATM 8 C C8 NAG . . . N 3 -11.983 16.154 0.638 1 37.13 ? C8 NAG 401 H 1 HETATM 9 N N2 NAG . . . N 3 -10.961 13.993 0.815 1 37.13 ? N2 NAG 401 H 1 HETATM 10 O O3 NAG . . . N 3 -12.891 12.714 2.594 1 37.13 ? O3 NAG 401 H 1 HETATM 11 O O4 NAG . . . N 3 -11.585 11.095 4.63 1 37.13 ? O4 NAG 401 H 1 HETATM 12 O O5 NAG . . . N 3 -9.347 10.818 1.748 1 37.13 ? O5 NAG 401 H 1 HETATM 13 O O6 NAG . . . N 3 -8.143 9.228 4.122 1 37.13 ? O6 NAG 401 H 1 HETATM 14 O O7 NAG . . . N 3 -13.163 14.147 1.152 1 37.13 ? O7 NAG 401 H 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 14 #