data_4M7Z # _model_server_result.job_id gQoXBjW9PAmJzI6Pvr4Y0Q _model_server_result.datetime_utc '2024-11-05 08:40:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4m7z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":402}' # _entry.id 4M7Z # _exptl.entry_id 4M7Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 194.226 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TETRAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4M7Z _cell.length_a 85.298 _cell.length_b 111.988 _cell.length_c 156.925 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4M7Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,G,H,I,J,K,L,M,R,S,X,Z 1 1 B,D,N,O,P,Q,T,U,V,W,Y,AA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N ? 4 O N N ? 4 R N N ? 4 T N N ? 4 U N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 B CYS 22 1_555 A SG CYS 95 B CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? disulf ? disulf2 A SG CYS 145 B CYS 140 1_555 A SG CYS 200 B CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf3 B SG CYS 22 H CYS 22 1_555 B SG CYS 95 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? disulf ? disulf4 B SG CYS 145 H CYS 140 1_555 B SG CYS 200 H CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf5 C SG CYS 23 C CYS 23 1_555 C SG CYS 93 C CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? disulf ? disulf6 C SG CYS 139 C CYS 134 1_555 C SG CYS 199 C CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? disulf ? disulf7 D SG CYS 23 L CYS 23 1_555 D SG CYS 93 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? disulf ? disulf8 D SG CYS 139 L CYS 134 1_555 D SG CYS 199 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? covale ? covale1 A ND2 ASN 88 B ASN 85 1_555 E C1 NAG . B NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? covale ? covale2 B ND2 ASN 88 H ASN 85 1_555 N C1 NAG . H NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? metalc ? metalc1 A OD2 ASP 58 B ASP 58 1_555 M CA CA . B CA 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.501 ? metalc ? metalc2 A OD1 ASP 58 B ASP 58 1_555 M CA CA . B CA 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.88 ? metalc ? metalc3 H O5 PG4 . B PG4 404 1_555 M CA CA . B CA 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? metalc ? metalc4 H O3 PG4 . B PG4 404 1_555 M CA CA . B CA 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc5 H O4 PG4 . B PG4 404 1_555 M CA CA . B CA 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.597 ? metalc ? metalc6 H O2 PG4 . B PG4 404 1_555 M CA CA . B CA 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.745 ? metalc ? metalc7 B OD2 ASP 58 H ASP 58 1_555 Q CA CA . H CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.633 ? metalc ? metalc8 B OD1 ASP 58 H ASP 58 1_555 Q CA CA . H CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.85 ? metalc ? metalc9 O O5 PG4 . H PG4 402 1_555 Q CA CA . H CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? metalc ? metalc10 O O4 PG4 . H PG4 402 1_555 Q CA CA . H CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.538 ? metalc ? metalc11 O O3 PG4 . H PG4 402 1_555 Q CA CA . H CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.609 ? metalc ? metalc12 O O2 PG4 . H PG4 402 1_555 Q CA CA . H CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.635 ? metalc ? metalc13 C OE1 GLU 84 C GLU 79 1_555 W CA CA . L CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.02 ? metalc ? metalc14 C OE2 GLU 86 C GLU 81 1_555 W CA CA . L CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc15 C OE1 GLU 86 C GLU 81 1_555 W CA CA . L CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.475 ? metalc ? metalc16 D OE1 GLU 84 L GLU 79 1_555 W CA CA . L CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.49 ? metalc ? metalc17 W CA CA . L CA 304 1_555 AA O HOH . L HOH 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.162 ? # _chem_comp.formula 'C8 H18 O5' _chem_comp.formula_weight 194.226 _chem_comp.id PG4 _chem_comp.mon_nstd_flag . _chem_comp.name 'TETRAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4M7Z _atom_sites.fract_transf_matrix[1][1] 0.011724 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00893 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006372 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 NAG B 1 401 401 NAG NAG . F 4 PG4 B 1 402 2 PG4 PG4 . G 4 PG4 B 1 403 3 PG4 PG4 . H 4 PG4 B 1 404 5 PG4 PG4 . I 4 PG4 B 1 405 7 PG4 PG4 . J 5 PEG B 1 406 1 PEG PEG . K 5 PEG B 1 407 2 PEG PEG . L 5 PEG B 1 408 5 PEG PEG . M 6 CA B 1 409 1 CA CA . N 3 NAG H 1 401 401 NAG NAG . O 4 PG4 H 1 402 4 PG4 PG4 . P 5 PEG H 1 403 3 PEG PEG . Q 6 CA H 1 404 3 CA CA . R 4 PG4 C 1 301 6 PG4 PG4 . S 5 PEG C 1 302 8 PEG PEG . T 4 PG4 L 1 301 1 PG4 PG4 . U 4 PG4 L 1 302 8 PG4 PG4 . V 5 PEG L 1 303 7 PEG PEG . W 6 CA L 1 304 2 CA CA . X 7 HOH B 1 501 7 HOH HOH . X 7 HOH B 2 502 9 HOH HOH . X 7 HOH B 3 503 11 HOH HOH . X 7 HOH B 4 504 18 HOH HOH . X 7 HOH B 5 505 24 HOH HOH . X 7 HOH B 6 506 26 HOH HOH . X 7 HOH B 7 507 36 HOH HOH . X 7 HOH B 8 508 37 HOH HOH . X 7 HOH B 9 509 40 HOH HOH . X 7 HOH B 10 510 42 HOH HOH . X 7 HOH B 11 511 43 HOH HOH . X 7 HOH B 12 512 44 HOH HOH . X 7 HOH B 13 513 46 HOH HOH . X 7 HOH B 14 514 47 HOH HOH . X 7 HOH B 15 515 51 HOH HOH . X 7 HOH B 16 516 54 HOH HOH . X 7 HOH B 17 517 59 HOH HOH . X 7 HOH B 18 518 60 HOH HOH . X 7 HOH B 19 519 66 HOH HOH . X 7 HOH B 20 520 67 HOH HOH . X 7 HOH B 21 521 71 HOH HOH . X 7 HOH B 22 522 76 HOH HOH . X 7 HOH B 23 523 77 HOH HOH . X 7 HOH B 24 524 78 HOH HOH . X 7 HOH B 25 525 79 HOH HOH . X 7 HOH B 26 526 80 HOH HOH . X 7 HOH B 27 527 81 HOH HOH . X 7 HOH B 28 528 85 HOH HOH . X 7 HOH B 29 529 87 HOH HOH . X 7 HOH B 30 530 88 HOH HOH . X 7 HOH B 31 531 89 HOH HOH . X 7 HOH B 32 532 90 HOH HOH . X 7 HOH B 33 533 91 HOH HOH . X 7 HOH B 34 534 92 HOH HOH . X 7 HOH B 35 535 95 HOH HOH . X 7 HOH B 36 536 100 HOH HOH . X 7 HOH B 37 537 102 HOH HOH . X 7 HOH B 38 538 107 HOH HOH . X 7 HOH B 39 539 109 HOH HOH . X 7 HOH B 40 540 116 HOH HOH . X 7 HOH B 41 541 119 HOH HOH . X 7 HOH B 42 542 120 HOH HOH . X 7 HOH B 43 543 121 HOH HOH . X 7 HOH B 44 544 122 HOH HOH . Y 7 HOH H 1 501 1 HOH HOH . Y 7 HOH H 2 502 4 HOH HOH . Y 7 HOH H 3 503 5 HOH HOH . Y 7 HOH H 4 504 8 HOH HOH . Y 7 HOH H 5 505 15 HOH HOH . Y 7 HOH H 6 506 25 HOH HOH . Y 7 HOH H 7 507 27 HOH HOH . Y 7 HOH H 8 508 29 HOH HOH . Y 7 HOH H 9 509 31 HOH HOH . Y 7 HOH H 10 510 33 HOH HOH . Y 7 HOH H 11 511 45 HOH HOH . Y 7 HOH H 12 512 48 HOH HOH . Y 7 HOH H 13 513 61 HOH HOH . Y 7 HOH H 14 514 62 HOH HOH . Y 7 HOH H 15 515 65 HOH HOH . Y 7 HOH H 16 516 69 HOH HOH . Y 7 HOH H 17 517 73 HOH HOH . Y 7 HOH H 18 518 86 HOH HOH . Y 7 HOH H 19 519 108 HOH HOH . Y 7 HOH H 20 520 112 HOH HOH . Y 7 HOH H 21 521 132 HOH HOH . Y 7 HOH H 22 522 135 HOH HOH . Z 7 HOH C 1 401 2 HOH HOH . Z 7 HOH C 2 402 12 HOH HOH . Z 7 HOH C 3 403 14 HOH HOH . Z 7 HOH C 4 404 16 HOH HOH . Z 7 HOH C 5 405 17 HOH HOH . Z 7 HOH C 6 406 28 HOH HOH . Z 7 HOH C 7 407 30 HOH HOH . Z 7 HOH C 8 408 32 HOH HOH . Z 7 HOH C 9 409 35 HOH HOH . Z 7 HOH C 10 410 41 HOH HOH . Z 7 HOH C 11 411 49 HOH HOH . Z 7 HOH C 12 412 50 HOH HOH . Z 7 HOH C 13 413 52 HOH HOH . Z 7 HOH C 14 414 53 HOH HOH . Z 7 HOH C 15 415 55 HOH HOH . Z 7 HOH C 16 416 56 HOH HOH . Z 7 HOH C 17 417 63 HOH HOH . Z 7 HOH C 18 418 64 HOH HOH . Z 7 HOH C 19 419 68 HOH HOH . Z 7 HOH C 20 420 70 HOH HOH . Z 7 HOH C 21 421 72 HOH HOH . Z 7 HOH C 22 422 74 HOH HOH . Z 7 HOH C 23 423 75 HOH HOH . Z 7 HOH C 24 424 83 HOH HOH . Z 7 HOH C 25 425 84 HOH HOH . Z 7 HOH C 26 426 94 HOH HOH . Z 7 HOH C 27 427 96 HOH HOH . Z 7 HOH C 28 428 97 HOH HOH . Z 7 HOH C 29 429 103 HOH HOH . Z 7 HOH C 30 430 104 HOH HOH . Z 7 HOH C 31 431 110 HOH HOH . Z 7 HOH C 32 432 114 HOH HOH . Z 7 HOH C 33 433 124 HOH HOH . Z 7 HOH C 34 434 125 HOH HOH . Z 7 HOH C 35 435 127 HOH HOH . Z 7 HOH C 36 436 128 HOH HOH . Z 7 HOH C 37 437 129 HOH HOH . Z 7 HOH C 38 438 130 HOH HOH . AA 7 HOH L 1 401 3 HOH HOH . AA 7 HOH L 2 402 6 HOH HOH . AA 7 HOH L 3 403 10 HOH HOH . AA 7 HOH L 4 404 13 HOH HOH . AA 7 HOH L 5 405 19 HOH HOH . AA 7 HOH L 6 406 21 HOH HOH . AA 7 HOH L 7 407 22 HOH HOH . AA 7 HOH L 8 408 34 HOH HOH . AA 7 HOH L 9 409 38 HOH HOH . AA 7 HOH L 10 410 39 HOH HOH . AA 7 HOH L 11 411 58 HOH HOH . AA 7 HOH L 12 412 82 HOH HOH . AA 7 HOH L 13 413 93 HOH HOH . AA 7 HOH L 14 414 106 HOH HOH . AA 7 HOH L 15 415 113 HOH HOH . AA 7 HOH L 16 416 115 HOH HOH . AA 7 HOH L 17 417 117 HOH HOH . AA 7 HOH L 18 418 123 HOH HOH . AA 7 HOH L 19 419 126 HOH HOH . AA 7 HOH L 20 420 134 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 PG4 . . . O 4 -11.301 -17.776 5.067 1 37.13 ? O1 PG4 402 H 1 HETATM 2 C C1 PG4 . . . O 4 -12.743 -17.855 5.022 1 37.13 ? C1 PG4 402 H 1 HETATM 3 C C2 PG4 . . . O 4 -13.423 -17.265 6.279 1 37.13 ? C2 PG4 402 H 1 HETATM 4 O O2 PG4 . . . O 4 -13.274 -15.831 6.433 1 37.13 ? O2 PG4 402 H 1 HETATM 5 C C3 PG4 . . . O 4 -12.043 -15.368 7.054 1 37.13 ? C3 PG4 402 H 1 HETATM 6 C C4 PG4 . . . O 4 -12.307 -14.82 8.464 1 37.13 ? C4 PG4 402 H 1 HETATM 7 O O3 PG4 . . . O 4 -12.689 -13.444 8.432 1 37.13 ? O3 PG4 402 H 1 HETATM 8 C C5 PG4 . . . O 4 -12.871 -12.821 9.719 1 37.13 ? C5 PG4 402 H 1 HETATM 9 C C6 PG4 . . . O 4 -13.987 -11.764 9.718 1 37.13 ? C6 PG4 402 H 1 HETATM 10 O O4 PG4 . . . O 4 -14.991 -12.115 8.751 1 37.13 ? O4 PG4 402 H 1 HETATM 11 C C7 PG4 . . . O 4 -16.26 -11.486 8.964 1 37.13 ? C7 PG4 402 H 1 HETATM 12 C C8 PG4 . . . O 4 -16.957 -11.21 7.626 1 37.13 ? C8 PG4 402 H 1 HETATM 13 O O5 PG4 . . . O 4 -16.593 -12.179 6.623 1 37.13 ? O5 PG4 402 H 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 13 #