data_4M88
#
_model_server_result.job_id            LVR3rQWKTtetflomBCSN7A 
_model_server_result.datetime_utc      '2024-12-27 00:42:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4m88 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":402}' 
#
_entry.id    4M88 
#
_exptl.entry_id    4M88 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          111.56 
_cell.angle_gamma         90 
_cell.entry_id            4M88 
_cell.length_a            36.076 
_cell.length_b            95.81 
_cell.length_c            50.3 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4M88 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
? 2 D N N 
? 2 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C ALA 67 A ALA 64 1_555 A N MSE 68 A MSE 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale2 A C MSE 68 A MSE 65 1_555 A N GLU 69 A GLU 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale3 A C PRO 78 A PRO 75 1_555 A N MSE 79 A MSE 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale4 A C MSE 79 A MSE 76 1_555 A N GLY 80 A GLY 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale5 A C ARG 86 A ARG 83 1_555 A N MSE 87 A MSE 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale6 A C MSE 87 A MSE 84 1_555 A N LEU 88 A LEU 85 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale7 A C GLN 137 A GLN 134 1_555 A N MSE 138 A MSE 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale8 A C MSE 138 A MSE 135 1_555 A N LEU 139 A LEU 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale9 A C GLY 140 A GLY 137 1_555 A N MSE 141 A MSE 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale10 A C MSE 141 A MSE 138 1_555 A N SER 142 A SER 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale11 A C GLY 157 A GLY 154 1_555 A N MSE 158 A MSE 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale12 A C MSE 158 A MSE 155 1_555 A N ALA 159 A ALA 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale13 A C LYS 262 A LYS 259 1_555 A N MSE 263 A MSE 260 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale14 A C MSE 263 A MSE 260 1_555 A N LEU 264 A LEU 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale15 A C ALA 273 A ALA 270 1_555 A N MSE 274 A MSE 271 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale16 A C MSE 274 A MSE 271 1_555 A N LYS 275 A LYS 272 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? 
covale ? covale17 A C GLN 280 A GLN 277 1_555 A N MSE 281 A MSE 278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale18 A C MSE 281 A MSE 278 1_555 A N GLN 282 A GLN 279 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale19 A C THR 321 A THR 318 1_555 A N MSE 322 A MSE 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale20 A C MSE 322 A MSE 319 1_555 A N GLY 323 A GLY 320 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 116 n n 
C1 C2 GOL sing 117 n n 
C1 H11 GOL sing 118 n n 
C1 H12 GOL sing 119 n n 
O1 HO1 GOL sing 120 n n 
C2 O2 GOL sing 121 n n 
C2 C3 GOL sing 122 n n 
C2 H2 GOL sing 123 n n 
O2 HO2 GOL sing 124 n n 
C3 O3 GOL sing 125 n n 
C3 H31 GOL sing 126 n n 
C3 H32 GOL sing 127 n n 
O3 HO3 GOL sing 128 n n 
#
_atom_sites.entry_id                     4M88 
_atom_sites.fract_transf_matrix[1][1]    0.027719 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.010954 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010437 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.021377 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GOL A 1 401 1 GOL GOL . 
C 2 GOL A 1 402 2 GOL GOL . 
D 2 GOL A 1 403 3 GOL GOL . 
E 2 GOL A 1 404 4 GOL GOL . 
F 3 HOH A 1 501 2 HOH HOH . 
F 3 HOH A 2 502 4 HOH HOH . 
F 3 HOH A 3 503 5 HOH HOH . 
F 3 HOH A 4 504 6 HOH HOH . 
F 3 HOH A 5 505 7 HOH HOH . 
F 3 HOH A 6 506 8 HOH HOH . 
F 3 HOH A 7 507 9 HOH HOH . 
F 3 HOH A 8 508 10 HOH HOH . 
F 3 HOH A 9 509 11 HOH HOH . 
F 3 HOH A 10 510 12 HOH HOH . 
F 3 HOH A 11 511 13 HOH HOH . 
F 3 HOH A 12 512 14 HOH HOH . 
F 3 HOH A 13 513 15 HOH HOH . 
F 3 HOH A 14 514 16 HOH HOH . 
F 3 HOH A 15 515 17 HOH HOH . 
F 3 HOH A 16 516 18 HOH HOH . 
F 3 HOH A 17 517 19 HOH HOH . 
F 3 HOH A 18 518 20 HOH HOH . 
F 3 HOH A 19 519 21 HOH HOH . 
F 3 HOH A 20 520 22 HOH HOH . 
F 3 HOH A 21 521 23 HOH HOH . 
F 3 HOH A 22 522 24 HOH HOH . 
F 3 HOH A 23 523 25 HOH HOH . 
F 3 HOH A 24 524 26 HOH HOH . 
F 3 HOH A 25 525 27 HOH HOH . 
F 3 HOH A 26 526 28 HOH HOH . 
F 3 HOH A 27 527 29 HOH HOH . 
F 3 HOH A 28 528 30 HOH HOH . 
F 3 HOH A 29 529 31 HOH HOH . 
F 3 HOH A 30 530 32 HOH HOH . 
F 3 HOH A 31 531 33 HOH HOH . 
F 3 HOH A 32 532 34 HOH HOH . 
F 3 HOH A 33 533 35 HOH HOH . 
F 3 HOH A 34 534 36 HOH HOH . 
F 3 HOH A 35 535 37 HOH HOH . 
F 3 HOH A 36 536 38 HOH HOH . 
F 3 HOH A 37 537 39 HOH HOH . 
F 3 HOH A 38 538 40 HOH HOH . 
F 3 HOH A 39 539 41 HOH HOH . 
F 3 HOH A 40 540 42 HOH HOH . 
F 3 HOH A 41 541 43 HOH HOH . 
F 3 HOH A 42 542 45 HOH HOH . 
F 3 HOH A 43 543 46 HOH HOH . 
F 3 HOH A 44 544 47 HOH HOH . 
F 3 HOH A 45 545 48 HOH HOH . 
F 3 HOH A 46 546 49 HOH HOH . 
F 3 HOH A 47 547 50 HOH HOH . 
F 3 HOH A 48 548 51 HOH HOH . 
F 3 HOH A 49 549 52 HOH HOH . 
F 3 HOH A 50 550 53 HOH HOH . 
F 3 HOH A 51 551 54 HOH HOH . 
F 3 HOH A 52 552 55 HOH HOH . 
F 3 HOH A 53 553 56 HOH HOH . 
F 3 HOH A 54 554 57 HOH HOH . 
F 3 HOH A 55 555 58 HOH HOH . 
F 3 HOH A 56 556 59 HOH HOH . 
F 3 HOH A 57 557 60 HOH HOH . 
F 3 HOH A 58 558 61 HOH HOH . 
F 3 HOH A 59 559 62 HOH HOH . 
F 3 HOH A 60 560 63 HOH HOH . 
F 3 HOH A 61 561 64 HOH HOH . 
F 3 HOH A 62 562 65 HOH HOH . 
F 3 HOH A 63 563 66 HOH HOH . 
F 3 HOH A 64 564 67 HOH HOH . 
F 3 HOH A 65 565 68 HOH HOH . 
F 3 HOH A 66 566 69 HOH HOH . 
F 3 HOH A 67 567 70 HOH HOH . 
F 3 HOH A 68 568 71 HOH HOH . 
F 3 HOH A 69 569 72 HOH HOH . 
F 3 HOH A 70 570 73 HOH HOH . 
F 3 HOH A 71 571 74 HOH HOH . 
F 3 HOH A 72 572 75 HOH HOH . 
F 3 HOH A 73 573 76 HOH HOH . 
F 3 HOH A 74 574 77 HOH HOH . 
F 3 HOH A 75 575 78 HOH HOH . 
F 3 HOH A 76 576 79 HOH HOH . 
F 3 HOH A 77 577 80 HOH HOH . 
F 3 HOH A 78 578 81 HOH HOH . 
F 3 HOH A 79 579 82 HOH HOH . 
F 3 HOH A 80 580 83 HOH HOH . 
F 3 HOH A 81 581 84 HOH HOH . 
F 3 HOH A 82 582 86 HOH HOH . 
F 3 HOH A 83 583 87 HOH HOH . 
F 3 HOH A 84 584 88 HOH HOH . 
F 3 HOH A 85 585 89 HOH HOH . 
F 3 HOH A 86 586 90 HOH HOH . 
F 3 HOH A 87 587 91 HOH HOH . 
F 3 HOH A 88 588 92 HOH HOH . 
F 3 HOH A 89 589 93 HOH HOH . 
F 3 HOH A 90 590 94 HOH HOH . 
F 3 HOH A 91 591 95 HOH HOH . 
F 3 HOH A 92 592 96 HOH HOH . 
F 3 HOH A 93 593 98 HOH HOH . 
F 3 HOH A 94 594 99 HOH HOH . 
F 3 HOH A 95 595 100 HOH HOH . 
F 3 HOH A 96 596 101 HOH HOH . 
F 3 HOH A 97 597 102 HOH HOH . 
F 3 HOH A 98 598 103 HOH HOH . 
F 3 HOH A 99 599 104 HOH HOH . 
F 3 HOH A 100 600 105 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . C 2 8.609 27.864 24.555 1 40.03 ? C1 GOL 402 A 1 
HETATM 2 O O1 GOL . . . C 2 7.61 27.869 25.547 1 32.86 ? O1 GOL 402 A 1 
HETATM 3 C C2 GOL . . . C 2 8.706 29.244 23.933 1 45.88 ? C2 GOL 402 A 1 
HETATM 4 O O2 GOL . . . C 2 7.943 30.152 24.703 1 52.34 ? O2 GOL 402 A 1 
HETATM 5 C C3 GOL . . . C 2 10.174 29.652 23.905 1 45.47 ? C3 GOL 402 A 1 
HETATM 6 O O3 GOL . . . C 2 10.258 31.057 23.97 1 45.53 ? O3 GOL 402 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           276 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           6 
#