data_4M8B # _model_server_result.job_id wsufiAbHTmYLA_l9Lu2X2Q _model_server_result.datetime_utc '2024-11-24 00:00:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4m8b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":301}' # _entry.id 4M8B # _exptl.entry_id 4M8B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4M8B _cell.length_a 90.293 _cell.length_b 103.401 _cell.length_c 73.178 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4M8B _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order hydrog WATSON-CRICK hydrog1 A N1 DG 1 A DG 1 1_555 B N3 DC 19 B DC 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N2 DG 1 A DG 1 1_555 B O2 DC 19 B DC 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O6 DG 1 A DG 1 1_555 B N4 DC 19 B DC 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N3 DC 2 A DC 2 1_555 B N1 DG 18 B DG 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N4 DC 2 A DC 2 1_555 B O6 DG 18 B DG 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A O2 DC 2 A DC 2 1_555 B N2 DG 18 B DG 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N1 DG 3 A DG 3 1_555 B N3 DC 17 B DC 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N2 DG 3 A DG 3 1_555 B O2 DC 17 B DC 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A O6 DG 3 A DG 3 1_555 B N4 DC 17 B DC 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N3 DC 4 A DC 4 1_555 B N1 DG 16 B DG 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N4 DC 4 A DC 4 1_555 B O6 DG 16 B DG 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A O2 DC 4 A DC 4 1_555 B N2 DG 16 B DG 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N1 DG 5 A DG 5 1_555 B N3 DC 15 B DC 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N2 DG 5 A DG 5 1_555 B O2 DC 15 B DC 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A O6 DG 5 A DG 5 1_555 B N4 DC 15 B DC 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A N3 DT 6 A DT 6 1_555 B N1 DA 14 B DA 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A O4 DT 6 A DT 6 1_555 B N6 DA 14 B DA 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A N3 DT 7 A DT 7 1_555 B N1 DA 13 B DA 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A O4 DT 7 A DT 7 1_555 B N6 DA 13 B DA 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A N1 DA 8 A DA 8 1_555 B N3 DT 12 B DT 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 A N6 DA 8 A DA 8 1_555 B O4 DT 12 B DT 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 A N1 DG 9 A DG 9 1_555 B N3 DC 11 B DC 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 A N2 DG 9 A DG 9 1_555 B O2 DC 11 B DC 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 A O6 DG 9 A DG 9 1_555 B N4 DC 11 B DC 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 A N3 DT 10 A DT 10 1_555 B N1 DA 10 B DA 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 A O4 DT 10 A DT 10 1_555 B N6 DA 10 B DA 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 A N1 DG 11 A DG 11 1_555 B N3 DC 9 B DC 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 A N2 DG 11 A DG 11 1_555 B O2 DC 9 B DC 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 A O6 DG 11 A DG 11 1_555 B N4 DC 9 B DC 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 A N3 DT 12 A DT 12 1_555 B N1 DA 8 B DA 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog31 A O4 DT 12 A DT 12 1_555 B N6 DA 8 B DA 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog32 A N3 DT 13 A DT 13 1_555 B N1 DA 7 B DA 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog33 A O4 DT 13 A DT 13 1_555 B N6 DA 7 B DA 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog34 A N3 DT 14 A DT 14 1_555 B N1 DA 6 B DA 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog35 A O4 DT 14 A DT 14 1_555 B N6 DA 6 B DA 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog36 A N1 DA 15 A DA 15 1_555 B N3 DT 5 B DT 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog37 A N6 DA 15 A DA 15 1_555 B O4 DT 5 B DT 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog38 A N3 DC 16 A DC 16 1_555 B N1 DG 4 B DG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog39 A N4 DC 16 A DC 16 1_555 B O6 DG 4 B DG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog40 A O2 DC 16 A DC 16 1_555 B N2 DG 4 B DG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog41 A N1 DG 17 A DG 17 1_555 B N3 DC 3 B DC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog42 A N2 DG 17 A DG 17 1_555 B O2 DC 3 B DC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog43 A O6 DG 17 A DG 17 1_555 B N4 DC 3 B DC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog44 A N3 DC 18 A DC 18 1_555 B N1 DG 2 B DG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog45 A N4 DC 18 A DC 18 1_555 B O6 DG 2 B DG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog46 A O2 DC 18 A DC 18 1_555 B N2 DG 2 B DG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog47 A N1 DG 19 A DG 19 1_555 B N3 DC 1 B DC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog48 A N2 DG 19 A DG 19 1_555 B O2 DC 1 B DC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog49 A O6 DG 19 A DG 19 1_555 B N4 DC 1 B DC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 232 n n C1 C2 EDO sing 233 n n C1 H11 EDO sing 234 n n C1 H12 EDO sing 235 n n O1 HO1 EDO sing 236 n n C2 O2 EDO sing 237 n n C2 H21 EDO sing 238 n n C2 H22 EDO sing 239 n n O2 HO2 EDO sing 240 n n # _atom_sites.entry_id 4M8B _atom_sites.fract_transf_matrix[1][1] 0.011075 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009671 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013665 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 EDO R 1 301 21 EDO EDO . E 5 HOH A 1 101 22 HOH HOH . E 5 HOH A 2 102 23 HOH HOH . E 5 HOH A 3 103 25 HOH HOH . E 5 HOH A 4 104 26 HOH HOH . E 5 HOH A 5 105 27 HOH HOH . E 5 HOH A 6 106 28 HOH HOH . E 5 HOH A 7 107 29 HOH HOH . E 5 HOH A 8 108 31 HOH HOH . E 5 HOH A 9 109 32 HOH HOH . E 5 HOH A 10 110 33 HOH HOH . E 5 HOH A 11 111 34 HOH HOH . E 5 HOH A 12 112 35 HOH HOH . E 5 HOH A 13 113 36 HOH HOH . E 5 HOH A 14 114 37 HOH HOH . E 5 HOH A 15 115 38 HOH HOH . E 5 HOH A 16 116 25 HOH HOH . E 5 HOH A 17 117 199 HOH HOH . E 5 HOH A 18 118 2 HOH HOH . F 5 HOH B 1 101 22 HOH HOH . F 5 HOH B 2 102 24 HOH HOH . F 5 HOH B 3 103 26 HOH HOH . F 5 HOH B 4 104 27 HOH HOH . F 5 HOH B 5 105 28 HOH HOH . F 5 HOH B 6 106 29 HOH HOH . F 5 HOH B 7 107 31 HOH HOH . F 5 HOH B 8 108 33 HOH HOH . F 5 HOH B 9 109 35 HOH HOH . F 5 HOH B 10 110 36 HOH HOH . F 5 HOH B 11 111 37 HOH HOH . F 5 HOH B 12 112 38 HOH HOH . F 5 HOH B 13 113 39 HOH HOH . F 5 HOH B 14 114 201 HOH HOH . F 5 HOH B 15 115 202 HOH HOH . F 5 HOH B 16 116 205 HOH HOH . G 5 HOH R 1 401 24 HOH HOH . G 5 HOH R 2 402 30 HOH HOH . G 5 HOH R 3 403 30 HOH HOH . G 5 HOH R 4 404 190 HOH HOH . G 5 HOH R 5 405 191 HOH HOH . G 5 HOH R 6 406 192 HOH HOH . G 5 HOH R 7 407 193 HOH HOH . G 5 HOH R 8 408 194 HOH HOH . G 5 HOH R 9 409 196 HOH HOH . G 5 HOH R 10 410 197 HOH HOH . G 5 HOH R 11 411 198 HOH HOH . G 5 HOH R 12 412 200 HOH HOH . G 5 HOH R 13 413 203 HOH HOH . G 5 HOH R 14 414 204 HOH HOH . G 5 HOH R 15 415 206 HOH HOH . G 5 HOH R 16 416 207 HOH HOH . G 5 HOH R 17 417 208 HOH HOH . G 5 HOH R 18 418 209 HOH HOH . G 5 HOH R 19 419 210 HOH HOH . G 5 HOH R 20 420 211 HOH HOH . G 5 HOH R 21 421 212 HOH HOH . G 5 HOH R 22 422 213 HOH HOH . G 5 HOH R 23 423 214 HOH HOH . G 5 HOH R 24 424 215 HOH HOH . G 5 HOH R 25 425 216 HOH HOH . G 5 HOH R 26 426 217 HOH HOH . G 5 HOH R 27 427 218 HOH HOH . G 5 HOH R 28 428 219 HOH HOH . G 5 HOH R 29 429 220 HOH HOH . G 5 HOH R 30 430 221 HOH HOH . G 5 HOH R 31 431 222 HOH HOH . G 5 HOH R 32 432 223 HOH HOH . G 5 HOH R 33 433 224 HOH HOH . G 5 HOH R 34 434 225 HOH HOH . G 5 HOH R 35 435 227 HOH HOH . G 5 HOH R 36 436 228 HOH HOH . G 5 HOH R 37 437 229 HOH HOH . G 5 HOH R 38 438 230 HOH HOH . G 5 HOH R 39 439 231 HOH HOH . G 5 HOH R 40 440 232 HOH HOH . G 5 HOH R 41 441 233 HOH HOH . G 5 HOH R 42 442 234 HOH HOH . G 5 HOH R 43 443 235 HOH HOH . G 5 HOH R 44 444 236 HOH HOH . G 5 HOH R 45 445 237 HOH HOH . G 5 HOH R 46 446 238 HOH HOH . G 5 HOH R 47 447 239 HOH HOH . G 5 HOH R 48 448 240 HOH HOH . G 5 HOH R 49 449 241 HOH HOH . G 5 HOH R 50 450 242 HOH HOH . G 5 HOH R 51 451 244 HOH HOH . G 5 HOH R 52 452 246 HOH HOH . G 5 HOH R 53 453 247 HOH HOH . G 5 HOH R 54 454 248 HOH HOH . G 5 HOH R 55 455 250 HOH HOH . G 5 HOH R 56 456 1 HOH HOH . G 5 HOH R 57 457 3 HOH HOH . G 5 HOH R 58 458 4 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . D 4 17.989 15.994 19.323 1 36.45 ? C1 EDO 301 R 1 HETATM 2 O O1 EDO . . . D 4 18.884 17.083 19.063 1 58.14 ? O1 EDO 301 R 1 HETATM 3 C C2 EDO . . . D 4 17.375 15.542 18.006 1 48.76 ? C2 EDO 301 R 1 HETATM 4 O O2 EDO . . . D 4 18.302 14.7 17.31 1 44.03 ? O2 EDO 301 R 1 # _model_server_stats.io_time_ms 84 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #