data_4M8E # _model_server_result.job_id 4dHMbJRv86dLfAKMB_UtTQ _model_server_result.datetime_utc '2025-03-13 17:01:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4m8e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":500}' # _entry.id 4M8E # _exptl.entry_id 4M8E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 310.43 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(3E,6Z,8E)-3,7-dimethyl-8-[(4S)-4-methyl-3,4-dihydronaphthalen-1(2H)-ylidene]octa-3,6-dienoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4M8E _cell.length_a 66.279 _cell.length_b 66.279 _cell.length_c 111.011 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4M8E _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_775 -y+2,-x+2,-z+1/2 0 -1 0 -1 0 0 0 0 -1 132.558 132.558 55.5055 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H26 O2' _chem_comp.formula_weight 310.43 _chem_comp.id 29V _chem_comp.mon_nstd_flag . _chem_comp.name '(3E,6Z,8E)-3,7-dimethyl-8-[(4S)-4-methyl-3,4-dihydronaphthalen-1(2H)-ylidene]octa-3,6-dienoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C19 C9 29V sing 1 n n C10 C9 29V doub 2 z n C10 C11 29V sing 3 n n C9 C8 29V sing 4 n n C12 C11 29V sing 5 n n C12 C13 29V doub 6 e n C14 C13 29V sing 7 n n C14 C15 29V sing 8 n n C13 C20 29V sing 9 n n C8 C7 29V doub 10 e n O1 C15 29V doub 11 n n C15 O2 29V sing 12 n n C7 C2' 29V sing 13 n n C7 C6 29V sing 14 n n C1 C6 29V doub 15 n y C1 C2 29V sing 16 n y C2' C1' 29V sing 17 n n C6 C5 29V sing 18 n y C2 C3 29V doub 19 n y C1' C18 29V sing 20 n n C5 C18 29V sing 21 n n C5 C4 29V doub 22 n y C3 C4 29V sing 23 n y C18 C4' 29V sing 24 n n C4' H1 29V sing 25 n n C4' H2 29V sing 26 n n C4' H3 29V sing 27 n n C1' H4 29V sing 28 n n C1' H5 29V sing 29 n n C2' H6 29V sing 30 n n C2' H7 29V sing 31 n n C8 H8 29V sing 32 n n C4 H9 29V sing 33 n n C2 H10 29V sing 34 n n C18 H11 29V sing 35 n n C3 H12 29V sing 36 n n C1 H13 29V sing 37 n n C19 H14 29V sing 38 n n C19 H15 29V sing 39 n n C19 H16 29V sing 40 n n C10 H17 29V sing 41 n n C11 H18 29V sing 42 n n C11 H19 29V sing 43 n n C12 H20 29V sing 44 n n C20 H21 29V sing 45 n n C20 H22 29V sing 46 n n C20 H23 29V sing 47 n n C14 H24 29V sing 48 n n C14 H25 29V sing 49 n n O2 H26 29V sing 50 n n # _atom_sites.entry_id 4M8E _atom_sites.fract_transf_matrix[1][1] 0.015088 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015088 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009008 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 29V A 1 500 500 29V S4M . D 4 HOH A 1 601 501 HOH HOH . D 4 HOH A 2 602 502 HOH HOH . D 4 HOH A 3 603 503 HOH HOH . D 4 HOH A 4 604 504 HOH HOH . D 4 HOH A 5 605 505 HOH HOH . D 4 HOH A 6 606 506 HOH HOH . D 4 HOH A 7 607 507 HOH HOH . D 4 HOH A 8 608 508 HOH HOH . D 4 HOH A 9 609 509 HOH HOH . D 4 HOH A 10 610 510 HOH HOH . D 4 HOH A 11 611 511 HOH HOH . D 4 HOH A 12 612 512 HOH HOH . D 4 HOH A 13 613 513 HOH HOH . D 4 HOH A 14 614 515 HOH HOH . D 4 HOH A 15 615 516 HOH HOH . D 4 HOH A 16 616 517 HOH HOH . D 4 HOH A 17 617 518 HOH HOH . D 4 HOH A 18 618 519 HOH HOH . D 4 HOH A 19 619 520 HOH HOH . D 4 HOH A 20 620 521 HOH HOH . D 4 HOH A 21 621 522 HOH HOH . D 4 HOH A 22 622 523 HOH HOH . D 4 HOH A 23 623 524 HOH HOH . D 4 HOH A 24 624 525 HOH HOH . D 4 HOH A 25 625 526 HOH HOH . D 4 HOH A 26 626 528 HOH HOH . D 4 HOH A 27 627 529 HOH HOH . D 4 HOH A 28 628 530 HOH HOH . D 4 HOH A 29 629 531 HOH HOH . D 4 HOH A 30 630 532 HOH HOH . D 4 HOH A 31 631 533 HOH HOH . D 4 HOH A 32 632 534 HOH HOH . D 4 HOH A 33 633 535 HOH HOH . D 4 HOH A 34 634 536 HOH HOH . D 4 HOH A 35 635 538 HOH HOH . D 4 HOH A 36 636 539 HOH HOH . D 4 HOH A 37 637 540 HOH HOH . D 4 HOH A 38 638 541 HOH HOH . D 4 HOH A 39 639 542 HOH HOH . D 4 HOH A 40 640 543 HOH HOH . D 4 HOH A 41 641 544 HOH HOH . D 4 HOH A 42 642 545 HOH HOH . D 4 HOH A 43 643 546 HOH HOH . D 4 HOH A 44 644 547 HOH HOH . D 4 HOH A 45 645 548 HOH HOH . D 4 HOH A 46 646 549 HOH HOH . D 4 HOH A 47 647 554 HOH HOH . D 4 HOH A 48 648 555 HOH HOH . D 4 HOH A 49 649 556 HOH HOH . D 4 HOH A 50 650 557 HOH HOH . D 4 HOH A 51 651 558 HOH HOH . D 4 HOH A 52 652 559 HOH HOH . D 4 HOH A 53 653 561 HOH HOH . D 4 HOH A 54 654 562 HOH HOH . D 4 HOH A 55 655 563 HOH HOH . D 4 HOH A 56 656 564 HOH HOH . D 4 HOH A 57 657 565 HOH HOH . D 4 HOH A 58 658 566 HOH HOH . D 4 HOH A 59 659 567 HOH HOH . D 4 HOH A 60 660 568 HOH HOH . D 4 HOH A 61 661 569 HOH HOH . D 4 HOH A 62 662 570 HOH HOH . D 4 HOH A 63 663 571 HOH HOH . D 4 HOH A 64 664 572 HOH HOH . D 4 HOH A 65 665 573 HOH HOH . D 4 HOH A 66 666 574 HOH HOH . D 4 HOH A 67 667 575 HOH HOH . D 4 HOH A 68 668 576 HOH HOH . D 4 HOH A 69 669 577 HOH HOH . D 4 HOH A 70 670 578 HOH HOH . D 4 HOH A 71 671 580 HOH HOH . D 4 HOH A 72 672 581 HOH HOH . D 4 HOH A 73 673 582 HOH HOH . D 4 HOH A 74 674 583 HOH HOH . D 4 HOH A 75 675 584 HOH HOH . D 4 HOH A 76 676 585 HOH HOH . D 4 HOH A 77 677 586 HOH HOH . D 4 HOH A 78 678 587 HOH HOH . D 4 HOH A 79 679 588 HOH HOH . D 4 HOH A 80 680 589 HOH HOH . D 4 HOH A 81 681 590 HOH HOH . D 4 HOH A 82 682 591 HOH HOH . D 4 HOH A 83 683 592 HOH HOH . D 4 HOH A 84 684 593 HOH HOH . D 4 HOH A 85 685 594 HOH HOH . D 4 HOH A 86 686 595 HOH HOH . D 4 HOH A 87 687 596 HOH HOH . D 4 HOH A 88 688 597 HOH HOH . D 4 HOH A 89 689 598 HOH HOH . D 4 HOH A 90 690 599 HOH HOH . D 4 HOH A 91 691 600 HOH HOH . D 4 HOH A 92 692 601 HOH HOH . D 4 HOH A 93 693 602 HOH HOH . D 4 HOH A 94 694 603 HOH HOH . D 4 HOH A 95 695 605 HOH HOH . D 4 HOH A 96 696 606 HOH HOH . D 4 HOH A 97 697 607 HOH HOH . D 4 HOH A 98 698 608 HOH HOH . D 4 HOH A 99 699 609 HOH HOH . D 4 HOH A 100 700 610 HOH HOH . D 4 HOH A 101 701 611 HOH HOH . D 4 HOH A 102 702 612 HOH HOH . D 4 HOH A 103 703 614 HOH HOH . D 4 HOH A 104 704 615 HOH HOH . D 4 HOH A 105 705 616 HOH HOH . D 4 HOH A 106 706 617 HOH HOH . D 4 HOH A 107 707 618 HOH HOH . D 4 HOH A 108 708 619 HOH HOH . D 4 HOH A 109 709 620 HOH HOH . D 4 HOH A 110 710 621 HOH HOH . D 4 HOH A 111 711 622 HOH HOH . D 4 HOH A 112 712 623 HOH HOH . D 4 HOH A 113 713 624 HOH HOH . D 4 HOH A 114 714 628 HOH HOH . D 4 HOH A 115 715 629 HOH HOH . D 4 HOH A 116 716 630 HOH HOH . D 4 HOH A 117 717 631 HOH HOH . D 4 HOH A 118 718 632 HOH HOH . D 4 HOH A 119 719 633 HOH HOH . D 4 HOH A 120 720 634 HOH HOH . D 4 HOH A 121 721 635 HOH HOH . D 4 HOH A 122 722 636 HOH HOH . D 4 HOH A 123 723 637 HOH HOH . D 4 HOH A 124 724 638 HOH HOH . D 4 HOH A 125 725 639 HOH HOH . D 4 HOH A 126 726 640 HOH HOH . D 4 HOH A 127 727 641 HOH HOH . D 4 HOH A 128 728 642 HOH HOH . D 4 HOH A 129 729 643 HOH HOH . E 4 HOH B 1 701 514 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4' 29V . . . C 3 64.898 48.67 35.027 1 37.02 ? C4' 29V 500 A 1 HETATM 2 C C1' 29V . . . C 3 64.242 49.321 32.702 1 38.48 ? C1' 29V 500 A 1 HETATM 3 C C2' 29V . . . C 3 64.047 48.856 31.252 1 39.37 ? C2' 29V 500 A 1 HETATM 4 C C8 29V . . . C 3 65.407 47.709 29.424 1 37.58 ? C8 29V 500 A 1 HETATM 5 C C5 29V . . . C 3 65.908 47.465 33.063 1 37.6 ? C5 29V 500 A 1 HETATM 6 C C6 29V . . . C 3 66.138 47.328 31.71 1 36.53 ? C6 29V 500 A 1 HETATM 7 C C4 29V . . . C 3 66.863 46.96 33.959 1 36.52 ? C4 29V 500 A 1 HETATM 8 C C2 29V . . . C 3 68.237 46.228 32.122 1 34.76 ? C2 29V 500 A 1 HETATM 9 C C18 29V . . . C 3 64.65 48.159 33.607 1 37.92 ? C18 29V 500 A 1 HETATM 10 C C3 29V . . . C 3 68.013 46.35 33.485 1 35.56 ? C3 29V 500 A 1 HETATM 11 C C1 29V . . . C 3 67.286 46.712 31.22 1 35.79 ? C1 29V 500 A 1 HETATM 12 C C7 29V . . . C 3 65.196 47.966 30.784 1 37.06 ? C7 29V 500 A 1 HETATM 13 C C9 29V . . . C 3 64.597 48.258 28.332 1 38.2 ? C9 29V 500 A 1 HETATM 14 C C19 29V . . . C 3 65.347 49.057 27.25 1 39.01 ? C19 29V 500 A 1 HETATM 15 C C10 29V . . . C 3 63.235 48.126 28.182 1 38.28 ? C10 29V 500 A 1 HETATM 16 C C11 29V . . . C 3 62.273 47.418 29.049 1 36.81 ? C11 29V 500 A 1 HETATM 17 C C12 29V . . . C 3 60.934 47.498 28.637 1 38.35 ? C12 29V 500 A 1 HETATM 18 C C13 29V . . . C 3 59.814 46.909 29.324 1 37.65 ? C13 29V 500 A 1 HETATM 19 C C20 29V . . . C 3 60.014 45.903 30.459 1 35.42 ? C20 29V 500 A 1 HETATM 20 C C14 29V . . . C 3 58.514 47.26 28.895 1 39.27 ? C14 29V 500 A 1 HETATM 21 C C15 29V . . . C 3 57.319 46.728 29.527 1 41.22 ? C15 29V 500 A 1 HETATM 22 O O1 29V . . . C 3 56.274 47.434 29.481 1 40.56 ? O1 29V 500 A 1 HETATM 23 O O2 29V . . . C 3 57.355 45.601 30.051 1 43.16 ? O2 29V 500 A 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 256 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 23 #