data_4M8J # _model_server_result.job_id MBGLiCX1vNTDfue0SGHMAQ _model_server_result.datetime_utc '2025-02-25 13:56:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4m8j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 4M8J # _exptl.entry_id 4M8J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 146.207 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-CARBOXY-N,N,N-TRIMETHYLPROPAN-1-AMINIUM _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4M8J _cell.length_a 129.075 _cell.length_b 129.075 _cell.length_c 160.717 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4M8J _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_675 -y+1,x-y+2,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 223.564458 0 3 'crystal symmetry operation' 3_465 -x+y-1,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -193.6125 111.782229 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C7 H16 N O2 1' _chem_comp.formula_weight 146.207 _chem_comp.id NM2 _chem_comp.mon_nstd_flag . _chem_comp.name 3-CARBOXY-N,N,N-TRIMETHYLPROPAN-1-AMINIUM _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 NM2 sing 237 n n N1 C8 NM2 sing 238 n n N1 C9 NM2 sing 239 n n N1 C10 NM2 sing 240 n n C2 C3 NM2 sing 241 n n O4 C5 NM2 sing 242 n n C5 O7 NM2 doub 243 n n C5 C6 NM2 sing 244 n n C6 C3 NM2 sing 245 n n C2 H21C NM2 sing 246 n n C2 H22C NM2 sing 247 n n C8 H81C NM2 sing 248 n n C8 H82C NM2 sing 249 n n C8 H83C NM2 sing 250 n n C9 H91C NM2 sing 251 n n C9 H92C NM2 sing 252 n n C9 H93C NM2 sing 253 n n C10 H101 NM2 sing 254 n n C10 H102 NM2 sing 255 n n C10 H103 NM2 sing 256 n n C3 H31C NM2 sing 257 n n C3 H32C NM2 sing 258 n n O4 H4 NM2 sing 259 n n C6 H61C NM2 sing 260 n n C6 H62C NM2 sing 261 n n # _atom_sites.entry_id 4M8J _atom_sites.fract_transf_matrix[1][1] 0.007747 _atom_sites.fract_transf_matrix[1][2] 0.004473 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008946 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006222 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NM2 A 1 601 1 NM2 NM2 . C 3 HOH A 1 701 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 NM2 . . . B 2 -48.076 91.009 8.698 1 79.76 ? N1 NM2 601 A 1 HETATM 2 C C8 NM2 . . . B 2 -49.404 91.555 8.49 1 48.43 ? C8 NM2 601 A 1 HETATM 3 O O4 NM2 . . . B 2 -43.412 90.752 9.517 1 74.78 ? O4 NM2 601 A 1 HETATM 4 C C5 NM2 . . . B 2 -43.949 90 8.663 1 84.6 ? C5 NM2 601 A 1 HETATM 5 O O7 NM2 . . . B 2 -43.707 88.763 8.67 1 73.7 ? O7 NM2 601 A 1 HETATM 6 C C6 NM2 . . . B 2 -44.884 90.589 7.641 1 92.79 ? C6 NM2 601 A 1 HETATM 7 C C2 NM2 . . . B 2 -47.135 91.694 7.79 1 54.79 ? C2 NM2 601 A 1 HETATM 8 C C9 NM2 . . . B 2 -47.701 91.187 10.09 1 99.8 ? C9 NM2 601 A 1 HETATM 9 C C10 NM2 . . . B 2 -48.119 89.588 8.418 1 79.4 ? C10 NM2 601 A 1 HETATM 10 C C3 NM2 . . . B 2 -45.704 91.679 8.314 1 60.03 ? C3 NM2 601 A 1 # _model_server_stats.io_time_ms 37 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 243 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 10 #