data_4M8T # _model_server_result.job_id HhAmbyeQI744ck9U-tK8ZQ _model_server_result.datetime_utc '2025-01-25 10:32:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4m8t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":801}' # _entry.id 4M8T # _exptl.entry_id 4M8T _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.245 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2E)-2-cyano-3-[3-(1H-pyrazol-4-yl)phenyl]prop-2-enamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4M8T _cell.length_a 46.99 _cell.length_b 46.99 _cell.length_c 291.1 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4M8T _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 194 A CYS 579 1_555 A SG CYS 194 A CYS 579 7_465 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? covale ? covale1 A SG CYS 51 A CYS 436 1_555 B C07 RMM . A RMM 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.733 ? metalc ? metalc1 A O GLY 86 A GLY 471 1_555 C NA NA . A NA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.587 ? metalc ? metalc2 A O HIS 88 A HIS 473 1_555 C NA NA . A NA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? metalc ? metalc3 A O ILE 91 A ILE 476 1_555 C NA NA . A NA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? metalc ? metalc4 A OG1 THR 93 A THR 478 1_555 C NA NA . A NA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? # _chem_comp.formula 'C13 H10 N4 O' _chem_comp.formula_weight 238.245 _chem_comp.id RMM _chem_comp.mon_nstd_flag . _chem_comp.name (2E)-2-cyano-3-[3-(1H-pyrazol-4-yl)phenyl]prop-2-enamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C10 C11 RMM doub 275 n y C10 C09 RMM sing 276 n y C11 C12 RMM sing 277 n y C09 C08 RMM doub 278 n y N01 C02 RMM trip 279 n n C17 C13 RMM sing 280 n y C17 N16 RMM doub 281 n y C12 C13 RMM sing 282 n n C12 C18 RMM doub 283 n y C02 C03 RMM sing 284 n n C08 C18 RMM sing 285 n y C08 C07 RMM sing 286 n n C13 C14 RMM doub 287 n y N16 N15 RMM sing 288 n y C03 C07 RMM doub 289 e n C03 C04 RMM sing 290 n n C14 N15 RMM sing 291 n y C04 N05 RMM sing 292 n n C04 O06 RMM doub 293 n n N05 H051 RMM sing 294 n n N05 H052 RMM sing 295 n n C07 H072 RMM sing 296 n n C09 H091 RMM sing 297 n n C10 H101 RMM sing 298 n n C11 H111 RMM sing 299 n n C14 H141 RMM sing 300 n n N15 H151 RMM sing 301 n n C17 H171 RMM sing 302 n n C18 H181 RMM sing 303 n n # _atom_sites.entry_id 4M8T _atom_sites.fract_transf_matrix[1][1] 0.021281 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021281 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003435 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RMM A 1 801 1 RMM RMM . C 3 NA A 1 802 1 NA NA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N01 RMM . . . B 2 -25.56 11.431 -22.436 1 61.52 ? N01 RMM 801 A 1 HETATM 2 C C02 RMM . . . B 2 -26.215 10.788 -21.754 1 62.56 ? C02 RMM 801 A 1 HETATM 3 C C03 RMM . . . B 2 -27.081 9.951 -20.874 1 61.89 ? C03 RMM 801 A 1 HETATM 4 C C04 RMM . . . B 2 -26.443 9.826 -19.534 1 55.37 ? C04 RMM 801 A 1 HETATM 5 N N05 RMM . . . B 2 -25.747 8.626 -19.181 1 57.46 ? N05 RMM 801 A 1 HETATM 6 O O06 RMM . . . B 2 -26.514 10.756 -18.743 1 54.42 ? O06 RMM 801 A 1 HETATM 7 C C07 RMM . . . B 2 -28.424 10.588 -20.721 1 67.68 ? C07 RMM 801 A 1 HETATM 8 C C08 RMM . . . B 2 -29.005 11.545 -21.707 1 58.2 ? C08 RMM 801 A 1 HETATM 9 C C09 RMM . . . B 2 -28.686 11.461 -23.031 1 58.38 ? C09 RMM 801 A 1 HETATM 10 C C10 RMM . . . B 2 -29.275 12.425 -24.002 1 53.57 ? C10 RMM 801 A 1 HETATM 11 C C11 RMM . . . B 2 -30.135 13.388 -23.565 1 52.86 ? C11 RMM 801 A 1 HETATM 12 C C12 RMM . . . B 2 -30.484 13.479 -22.118 1 50.08 ? C12 RMM 801 A 1 HETATM 13 C C13 RMM . . . B 2 -31.434 14.519 -21.631 1 48.23 ? C13 RMM 801 A 1 HETATM 14 C C14 RMM . . . B 2 -31.532 14.978 -20.349 1 49.12 ? C14 RMM 801 A 1 HETATM 15 N N15 RMM . . . B 2 -32.548 15.928 -20.324 1 46.33 ? N15 RMM 801 A 1 HETATM 16 N N16 RMM . . . B 2 -33.065 16.044 -21.566 1 51.19 ? N16 RMM 801 A 1 HETATM 17 C C17 RMM . . . B 2 -32.403 15.179 -22.415 1 47.01 ? C17 RMM 801 A 1 HETATM 18 C C18 RMM . . . B 2 -29.949 12.594 -21.231 1 47.56 ? C18 RMM 801 A 1 HETATM 19 H H051 RMM . . . B 2 -25.697 7.939 -19.774 1 68.96 ? H051 RMM 801 A 1 HETATM 20 H H052 RMM . . . B 2 -25.357 8.55 -18.364 1 68.96 ? H052 RMM 801 A 1 HETATM 21 H H072 RMM . . . B 2 -28.524 10.939 -19.822 1 81.21 ? H072 RMM 801 A 1 HETATM 22 H H091 RMM . . . B 2 -28.07 10.778 -23.339 1 70.06 ? H091 RMM 801 A 1 HETATM 23 H H101 RMM . . . B 2 -29.046 12.368 -24.943 1 64.29 ? H101 RMM 801 A 1 HETATM 24 H H111 RMM . . . B 2 -30.522 14.014 -24.196 1 63.43 ? H111 RMM 801 A 1 HETATM 25 H H141 RMM . . . B 2 -30.99 14.696 -19.595 1 58.95 ? H141 RMM 801 A 1 HETATM 26 H H151 RMM . . . B 2 -32.817 16.395 -19.594 1 55.6 ? H151 RMM 801 A 1 HETATM 27 H H171 RMM . . . B 2 -32.568 15.054 -23.363 1 56.41 ? H171 RMM 801 A 1 HETATM 28 H H181 RMM . . . B 2 -30.177 12.652 -20.29 1 57.08 ? H181 RMM 801 A 1 # _model_server_stats.io_time_ms 65 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 263 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 28 #