data_4M8X # _model_server_result.job_id HsEivOnNQjukrByTQ-b5-A _model_server_result.datetime_utc '2024-10-19 19:28:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4m8x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":101}' # _entry.id 4M8X # _exptl.entry_id 4M8X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 728.787 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIETHYL ({4-[(2S,3R)-2-({[(3R,3AS,6AR)-HEXAHYDROFURO[2,3-B]FURAN-3-YLOXY]CARBONYL}AMINO)-3-HYDROXY-4-{ISOBUTYL[(4-METHOXYPHENYL)SULFONYL]AMINO}BUTYL]PHENOXY}METHYL)PHOSPHONATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4M8X _cell.length_a 61.756 _cell.length_b 61.756 _cell.length_c 83.352 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4M8X _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C33 H49 N2 O12 P S' _chem_comp.formula_weight 728.787 _chem_comp.id KGQ _chem_comp.mon_nstd_flag . _chem_comp.name 'DIETHYL ({4-[(2S,3R)-2-({[(3R,3AS,6AR)-HEXAHYDROFURO[2,3-B]FURAN-3-YLOXY]CARBONYL}AMINO)-3-HYDROXY-4-{ISOBUTYL[(4-METHOXYPHENYL)SULFONYL]AMINO}BUTYL]PHENOXY}METHYL)PHOSPHONATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N C6 KGQ sing 173 n n N C4 KGQ sing 174 n n N HN KGQ sing 175 n n C C1 KGQ sing 176 n n C C5 KGQ sing 177 n n C C32 KGQ sing 178 n n C H KGQ sing 179 n n O C15 KGQ sing 180 n n O C14 KGQ sing 181 n n C6 C8 KGQ sing 182 n n C6 C7 KGQ sing 183 n n C6 H6 KGQ sing 184 n n C8 C9 KGQ sing 185 n n C8 H81 KGQ sing 186 n n C8 H82 KGQ sing 187 n n C9 C11 KGQ doub 188 n y C9 C10 KGQ sing 189 n y C11 C13 KGQ sing 190 n y C11 H11 KGQ sing 191 n n C13 C14 KGQ doub 192 n y C13 H13 KGQ sing 193 n n C14 C12 KGQ sing 194 n y C15 P KGQ sing 195 n n C15 H151 KGQ sing 196 n n C15 H152 KGQ sing 197 n n P O1 KGQ sing 198 n n P O3 KGQ sing 199 n n P O2 KGQ doub 200 n n O3 C18 KGQ sing 201 n n C18 C19 KGQ sing 202 n n C18 H181 KGQ sing 203 n n C18 H182 KGQ sing 204 n n C19 H191 KGQ sing 205 n n C19 H192 KGQ sing 206 n n C19 H193 KGQ sing 207 n n O1 C16 KGQ sing 208 n n C16 C17 KGQ sing 209 n n C16 H161 KGQ sing 210 n n C16 H162 KGQ sing 211 n n C17 H171 KGQ sing 212 n n C17 H172 KGQ sing 213 n n C17 H173 KGQ sing 214 n n C12 C10 KGQ doub 215 n y C12 H12 KGQ sing 216 n n C10 H10 KGQ sing 217 n n C7 C20 KGQ sing 218 n n C7 O8 KGQ sing 219 n n C7 H7 KGQ sing 220 n n O8 HO8 KGQ sing 221 n n C20 N1 KGQ sing 222 n n C20 H201 KGQ sing 223 n n C20 H202 KGQ sing 224 n n N1 S KGQ sing 225 n n N1 C21 KGQ sing 226 n n C21 C22 KGQ sing 227 n n C21 H211 KGQ sing 228 n n C21 H212 KGQ sing 229 n n C22 C29 KGQ sing 230 n n C22 C30 KGQ sing 231 n n C22 H22 KGQ sing 232 n n C30 H301 KGQ sing 233 n n C30 H302 KGQ sing 234 n n C30 H303 KGQ sing 235 n n C29 H291 KGQ sing 236 n n C29 H292 KGQ sing 237 n n C29 H293 KGQ sing 238 n n S O9 KGQ doub 239 n n S C23 KGQ sing 240 n n S O10 KGQ doub 241 n n C23 C24 KGQ doub 242 n y C23 C28 KGQ sing 243 n y C28 C27 KGQ doub 244 n y C28 H28 KGQ sing 245 n n C27 C26 KGQ sing 246 n y C27 H27 KGQ sing 247 n n C26 O5 KGQ sing 248 n n C26 C25 KGQ doub 249 n y O5 C31 KGQ sing 250 n n C31 H311 KGQ sing 251 n n C31 H312 KGQ sing 252 n n C31 H313 KGQ sing 253 n n C25 C24 KGQ sing 254 n y C25 H25 KGQ sing 255 n n C24 H24 KGQ sing 256 n n C4 O7 KGQ doub 257 n n C4 O6 KGQ sing 258 n n O6 C5 KGQ sing 259 n n C5 C3 KGQ sing 260 n n C5 H5 KGQ sing 261 n n C3 O4 KGQ sing 262 n n C3 H31 KGQ sing 263 n n C3 H32A KGQ sing 264 n n O4 C32 KGQ sing 265 n n C32 O11 KGQ sing 266 n n C32 H32 KGQ sing 267 n n O11 C2 KGQ sing 268 n n C2 C1 KGQ sing 269 n n C2 H21 KGQ sing 270 n n C2 H22A KGQ sing 271 n n C1 H11A KGQ sing 272 n n C1 H12A KGQ sing 273 n n # _atom_sites.entry_id 4M8X _atom_sites.fract_transf_matrix[1][1] 0.016193 _atom_sites.fract_transf_matrix[1][2] 0.009349 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018698 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011997 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 KGQ B 1 101 1 KGQ GS1 . D 2 KGQ B 1 102 1 KGQ GS1 . E 3 HOH A 1 101 1 HOH HOH . E 3 HOH A 2 102 39 HOH HOH . E 3 HOH A 3 103 42 HOH HOH . E 3 HOH A 4 104 43 HOH HOH . E 3 HOH A 5 105 45 HOH HOH . E 3 HOH A 6 106 46 HOH HOH . E 3 HOH A 7 107 47 HOH HOH . E 3 HOH A 8 108 48 HOH HOH . E 3 HOH A 9 109 49 HOH HOH . E 3 HOH A 10 110 53 HOH HOH . E 3 HOH A 11 111 57 HOH HOH . E 3 HOH A 12 112 59 HOH HOH . E 3 HOH A 13 113 61 HOH HOH . E 3 HOH A 14 114 64 HOH HOH . E 3 HOH A 15 115 65 HOH HOH . E 3 HOH A 16 116 66 HOH HOH . E 3 HOH A 17 117 67 HOH HOH . E 3 HOH A 18 118 68 HOH HOH . E 3 HOH A 19 119 69 HOH HOH . E 3 HOH A 20 120 72 HOH HOH . E 3 HOH A 21 121 73 HOH HOH . E 3 HOH A 22 122 74 HOH HOH . E 3 HOH A 23 123 75 HOH HOH . E 3 HOH A 24 124 76 HOH HOH . E 3 HOH A 25 125 79 HOH HOH . E 3 HOH A 26 126 84 HOH HOH . E 3 HOH A 27 127 85 HOH HOH . F 3 HOH B 1 201 2 HOH HOH . F 3 HOH B 2 202 3 HOH HOH . F 3 HOH B 3 203 4 HOH HOH . F 3 HOH B 4 204 6 HOH HOH . F 3 HOH B 5 205 7 HOH HOH . F 3 HOH B 6 206 8 HOH HOH . F 3 HOH B 7 207 9 HOH HOH . F 3 HOH B 8 208 10 HOH HOH . F 3 HOH B 9 209 11 HOH HOH . F 3 HOH B 10 210 12 HOH HOH . F 3 HOH B 11 211 13 HOH HOH . F 3 HOH B 12 212 15 HOH HOH . F 3 HOH B 13 213 16 HOH HOH . F 3 HOH B 14 214 18 HOH HOH . F 3 HOH B 15 215 19 HOH HOH . F 3 HOH B 16 216 20 HOH HOH . F 3 HOH B 17 217 22 HOH HOH . F 3 HOH B 18 218 23 HOH HOH . F 3 HOH B 19 219 24 HOH HOH . F 3 HOH B 20 220 26 HOH HOH . F 3 HOH B 21 221 27 HOH HOH . F 3 HOH B 22 222 29 HOH HOH . F 3 HOH B 23 223 30 HOH HOH . F 3 HOH B 24 224 31 HOH HOH . F 3 HOH B 25 225 32 HOH HOH . F 3 HOH B 26 226 33 HOH HOH . F 3 HOH B 27 227 34 HOH HOH . F 3 HOH B 28 228 38 HOH HOH . F 3 HOH B 29 229 40 HOH HOH . F 3 HOH B 30 230 41 HOH HOH . F 3 HOH B 31 231 44 HOH HOH . F 3 HOH B 32 232 50 HOH HOH . F 3 HOH B 33 233 51 HOH HOH . F 3 HOH B 34 234 52 HOH HOH . F 3 HOH B 35 235 54 HOH HOH . F 3 HOH B 36 236 56 HOH HOH . F 3 HOH B 37 237 58 HOH HOH . F 3 HOH B 38 238 60 HOH HOH . F 3 HOH B 39 239 62 HOH HOH . F 3 HOH B 40 240 70 HOH HOH . F 3 HOH B 41 241 78 HOH HOH . F 3 HOH B 42 242 80 HOH HOH . F 3 HOH B 43 243 81 HOH HOH . F 3 HOH B 44 244 83 HOH HOH . F 3 HOH B 45 245 86 HOH HOH . F 3 HOH B 46 246 87 HOH HOH . F 3 HOH B 47 247 88 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N KGQ . A . C 2 -11.856 52.458 2.311 0.5 41.09 ? N KGQ 101 B 1 HETATM 2 C C KGQ . A . C 2 -13.677 51.018 -1.399 0.5 43.78 ? C KGQ 101 B 1 HETATM 3 O O KGQ . A . C 2 -14.872 47.144 2.077 0.5 50.32 ? O KGQ 101 B 1 HETATM 4 C C6 KGQ . A . C 2 -11.946 52.551 3.802 0.5 41.45 ? C6 KGQ 101 B 1 HETATM 5 C C8 KGQ . A . C 2 -11.54 51.158 4.36 0.5 40.15 ? C8 KGQ 101 B 1 HETATM 6 C C9 KGQ . A . C 2 -12.427 50.051 3.758 0.5 41.4 ? C9 KGQ 101 B 1 HETATM 7 C C11 KGQ . A . C 2 -11.869 48.99 3.026 0.5 43.48 ? C11 KGQ 101 B 1 HETATM 8 C C13 KGQ . A . C 2 -12.679 48.005 2.467 0.5 43.99 ? C13 KGQ 101 B 1 HETATM 9 C C14 KGQ . A . C 2 -14.062 48.088 2.633 0.5 45.96 ? C14 KGQ 101 B 1 HETATM 10 C C15 KGQ . A . C 2 -15.851 47.839 1.298 0.5 51.3 ? C15 KGQ 101 B 1 HETATM 11 P P KGQ . A . C 2 -16.7 46.63 0.205 0.5 54.01 ? P KGQ 101 B 1 HETATM 12 O O3 KGQ . A . C 2 -18.327 46.804 0.277 0.5 48.64 ? O3 KGQ 101 B 1 HETATM 13 C C18 KGQ . A . C 2 -19.218 46.068 1.14 0.5 49.49 ? C18 KGQ 101 B 1 HETATM 14 C C19 KGQ . A . C 2 -20.097 47.059 1.953 0.5 47.64 ? C19 KGQ 101 B 1 HETATM 15 O O2 KGQ . A . C 2 -16.217 47.106 -1.27 0.5 55.71 ? O2 KGQ 101 B 1 HETATM 16 O O1 KGQ . A . C 2 -16.084 45.144 0.405 0.5 54.07 ? O1 KGQ 101 B 1 HETATM 17 C C16 KGQ . A . C 2 -14.843 44.811 -0.245 0.5 53.63 ? C16 KGQ 101 B 1 HETATM 18 C C17 KGQ . A . C 2 -14.57 43.307 -0.126 0.5 52.8 ? C17 KGQ 101 B 1 HETATM 19 C C12 KGQ . A . C 2 -14.623 49.148 3.346 0.5 44.32 ? C12 KGQ 101 B 1 HETATM 20 C C10 KGQ . A . C 2 -13.808 50.121 3.922 0.5 42.03 ? C10 KGQ 101 B 1 HETATM 21 C C7 KGQ . A . C 2 -10.919 53.574 4.266 0.5 41.75 ? C7 KGQ 101 B 1 HETATM 22 O O8 KGQ . A . C 2 -9.688 52.854 4.221 0.5 39.72 ? O8 KGQ 101 B 1 HETATM 23 C C20 KGQ . A . C 2 -11.129 54.159 5.694 0.5 43.76 ? C20 KGQ 101 B 1 HETATM 24 N N1 KGQ . A . C 2 -12.362 54.988 5.871 0.5 45.1 ? N1 KGQ 101 B 1 HETATM 25 C C21 KGQ . A . C 2 -12.877 55.439 4.551 0.5 46.39 ? C21 KGQ 101 B 1 HETATM 26 C C22 KGQ . A . C 2 -12.664 56.936 4.305 0.5 44.61 ? C22 KGQ 101 B 1 HETATM 27 C C30 KGQ . A . C 2 -11.173 57.24 4.188 0.5 46.6 ? C30 KGQ 101 B 1 HETATM 28 C C29 KGQ . A . C 2 -13.308 57.764 5.416 0.5 46.91 ? C29 KGQ 101 B 1 HETATM 29 S S KGQ . A . C 2 -13.538 54.111 6.767 0.5 46.34 ? S KGQ 101 B 1 HETATM 30 O O10 KGQ . A . C 2 -14.937 54.479 6.346 0.5 44.19 ? O10 KGQ 101 B 1 HETATM 31 O O9 KGQ . A . C 2 -13.35 52.605 6.682 0.5 43.84 ? O9 KGQ 101 B 1 HETATM 32 C C23 KGQ . A . C 2 -13.309 54.419 8.519 0.5 48.46 ? C23 KGQ 101 B 1 HETATM 33 C C28 KGQ . A . C 2 -12.394 53.636 9.243 0.5 48.02 ? C28 KGQ 101 B 1 HETATM 34 C C27 KGQ . A . C 2 -12.199 53.887 10.6 0.5 48.94 ? C27 KGQ 101 B 1 HETATM 35 C C26 KGQ . A . C 2 -12.928 54.905 11.237 0.5 49.97 ? C26 KGQ 101 B 1 HETATM 36 O O5 KGQ . A . C 2 -12.768 55.163 12.572 0.5 52.99 ? O5 KGQ 101 B 1 HETATM 37 C C31 KGQ . A . C 2 -12.976 56.549 12.854 0.5 52.24 ? C31 KGQ 101 B 1 HETATM 38 C C25 KGQ . A . C 2 -13.834 55.667 10.519 0.5 49.35 ? C25 KGQ 101 B 1 HETATM 39 C C24 KGQ . A . C 2 -14.027 55.429 9.158 0.5 49.51 ? C24 KGQ 101 B 1 HETATM 40 C C4 KGQ . A . C 2 -12.753 52.858 1.386 0.5 41.8 ? C4 KGQ 101 B 1 HETATM 41 O O7 KGQ . A . C 2 -13.875 53.364 1.596 0.5 40.81 ? O7 KGQ 101 B 1 HETATM 42 O O6 KGQ . A . C 2 -12.354 52.603 0.088 0.5 43.05 ? O6 KGQ 101 B 1 HETATM 43 C C5 KGQ . A . C 2 -13.438 52.453 -0.874 0.5 43.82 ? C5 KGQ 101 B 1 HETATM 44 C C3 KGQ . A . C 2 -12.947 53.128 -2.136 0.5 44.29 ? C3 KGQ 101 B 1 HETATM 45 O O4 KGQ . A . C 2 -12.045 52.152 -2.724 0.5 43.31 ? O4 KGQ 101 B 1 HETATM 46 C C32 KGQ . A . C 2 -12.593 50.815 -2.457 0.5 42.47 ? C32 KGQ 101 B 1 HETATM 47 O O11 KGQ . A . C 2 -11.59 49.951 -1.831 0.5 42.01 ? O11 KGQ 101 B 1 HETATM 48 C C2 KGQ . A . C 2 -12.275 49.099 -0.882 0.5 42.31 ? C2 KGQ 101 B 1 HETATM 49 C C1 KGQ . A . C 2 -13.45 49.902 -0.365 0.5 42.5 ? C1 KGQ 101 B 1 # _model_server_stats.io_time_ms 49 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 49 #