data_4M94 # _model_server_result.job_id srv2qh_fs8GWDgq3lDTpYw _model_server_result.datetime_utc '2024-10-18 15:23:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4m94 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":302}' # _entry.id 4M94 # _exptl.entry_id 4M94 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4M94 _cell.length_a 53.957 _cell.length_b 145.722 _cell.length_c 46.876 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4M94 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B O3' DG 5 B DG 5 1_555 B P QBT 6 B QBT 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.589 ? covale ? covale2 B C5 QBT 6 B QBT 6 1_555 B C7 DT 7 B DT 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.584 ? hydrog WATSON-CRICK hydrog1 B N1 DA 1 B DA 1 1_555 C N3 DT 8 G DT 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 B N6 DA 1 B DA 1 1_555 C O4 DT 8 G DT 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 B N3 DT 2 B DT 2 1_555 C N1 DA 7 G DA 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 B O4 DT 2 B DT 2 1_555 C N6 DA 7 G DA 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 B N3 DC 3 B DC 3 1_555 C N1 DG 6 G DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 B N4 DC 3 B DC 3 1_555 C O6 DG 6 G DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 B O2 DC 3 B DC 3 1_555 C N2 DG 6 G DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 B N3 DC 4 B DC 4 1_555 C N1 DG 5 G DG 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 B N4 DC 4 B DC 4 1_555 C O6 DG 5 G DG 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 B O2 DC 4 B DC 4 1_555 C N2 DG 5 G DG 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 B N1 DG 5 B DG 5 1_555 C N3 DC 4 G DC 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 B N2 DG 5 B DG 5 1_555 C O2 DC 4 G DC 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 B O6 DG 5 B DG 5 1_555 C N4 DC 4 G DC 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 B N3 QBT 6 B QBT 6 1_555 C N1 DA 3 G DA 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 B O4 QBT 6 B QBT 6 1_555 C N6 DA 3 G DA 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 B N3 DT 7 B DT 7 1_555 C N1 DA 2 G DA 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 B O4 DT 7 B DT 7 1_555 C N6 DA 2 G DA 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 B N1 DA 8 B DA 8 1_555 C N3 DT 1 G DT 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 B N6 DA 8 B DA 8 1_555 C O4 DT 1 G DT 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 232 n n C1 C2 EDO sing 233 n n C1 H11 EDO sing 234 n n C1 H12 EDO sing 235 n n O1 HO1 EDO sing 236 n n C2 O2 EDO sing 237 n n C2 H21 EDO sing 238 n n C2 H22 EDO sing 239 n n O2 HO2 EDO sing 240 n n # _atom_sites.entry_id 4M94 _atom_sites.fract_transf_matrix[1][1] 0.018533 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006862 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021333 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 EDO A 1 301 508 EDO EDO . E 4 EDO A 1 302 509 EDO EDO . F 4 EDO A 1 303 510 EDO EDO . G 4 EDO A 1 304 511 EDO EDO . H 5 HOH A 1 401 301 HOH HOH . H 5 HOH A 2 402 302 HOH HOH . H 5 HOH A 3 403 303 HOH HOH . H 5 HOH A 4 404 304 HOH HOH . H 5 HOH A 5 405 305 HOH HOH . H 5 HOH A 6 406 306 HOH HOH . H 5 HOH A 7 407 307 HOH HOH . H 5 HOH A 8 408 308 HOH HOH . H 5 HOH A 9 409 309 HOH HOH . H 5 HOH A 10 410 310 HOH HOH . H 5 HOH A 11 411 311 HOH HOH . H 5 HOH A 12 412 312 HOH HOH . H 5 HOH A 13 413 313 HOH HOH . H 5 HOH A 14 414 314 HOH HOH . H 5 HOH A 15 415 315 HOH HOH . H 5 HOH A 16 416 316 HOH HOH . H 5 HOH A 17 417 317 HOH HOH . H 5 HOH A 18 418 318 HOH HOH . H 5 HOH A 19 419 319 HOH HOH . H 5 HOH A 20 420 320 HOH HOH . H 5 HOH A 21 421 321 HOH HOH . H 5 HOH A 22 422 323 HOH HOH . H 5 HOH A 23 423 324 HOH HOH . H 5 HOH A 24 424 326 HOH HOH . H 5 HOH A 25 425 327 HOH HOH . H 5 HOH A 26 426 328 HOH HOH . H 5 HOH A 27 427 330 HOH HOH . H 5 HOH A 28 428 331 HOH HOH . H 5 HOH A 29 429 332 HOH HOH . H 5 HOH A 30 430 333 HOH HOH . H 5 HOH A 31 431 334 HOH HOH . H 5 HOH A 32 432 335 HOH HOH . H 5 HOH A 33 433 336 HOH HOH . H 5 HOH A 34 434 337 HOH HOH . H 5 HOH A 35 435 338 HOH HOH . H 5 HOH A 36 436 339 HOH HOH . H 5 HOH A 37 437 341 HOH HOH . H 5 HOH A 38 438 342 HOH HOH . H 5 HOH A 39 439 343 HOH HOH . H 5 HOH A 40 440 344 HOH HOH . H 5 HOH A 41 441 345 HOH HOH . H 5 HOH A 42 442 346 HOH HOH . H 5 HOH A 43 443 347 HOH HOH . H 5 HOH A 44 444 348 HOH HOH . H 5 HOH A 45 445 349 HOH HOH . H 5 HOH A 46 446 350 HOH HOH . H 5 HOH A 47 447 351 HOH HOH . H 5 HOH A 48 448 352 HOH HOH . H 5 HOH A 49 449 353 HOH HOH . H 5 HOH A 50 450 354 HOH HOH . H 5 HOH A 51 451 355 HOH HOH . H 5 HOH A 52 452 356 HOH HOH . H 5 HOH A 53 453 357 HOH HOH . H 5 HOH A 54 454 358 HOH HOH . H 5 HOH A 55 455 359 HOH HOH . H 5 HOH A 56 456 360 HOH HOH . H 5 HOH A 57 457 361 HOH HOH . H 5 HOH A 58 458 362 HOH HOH . H 5 HOH A 59 459 363 HOH HOH . H 5 HOH A 60 460 364 HOH HOH . H 5 HOH A 61 461 366 HOH HOH . H 5 HOH A 62 462 367 HOH HOH . H 5 HOH A 63 463 369 HOH HOH . H 5 HOH A 64 464 370 HOH HOH . H 5 HOH A 65 465 371 HOH HOH . H 5 HOH A 66 466 372 HOH HOH . H 5 HOH A 67 467 374 HOH HOH . H 5 HOH A 68 468 375 HOH HOH . H 5 HOH A 69 469 376 HOH HOH . H 5 HOH A 70 470 377 HOH HOH . H 5 HOH A 71 471 378 HOH HOH . H 5 HOH A 72 472 379 HOH HOH . H 5 HOH A 73 473 380 HOH HOH . H 5 HOH A 74 474 381 HOH HOH . H 5 HOH A 75 475 384 HOH HOH . H 5 HOH A 76 476 385 HOH HOH . H 5 HOH A 77 477 387 HOH HOH . H 5 HOH A 78 478 388 HOH HOH . H 5 HOH A 79 479 389 HOH HOH . H 5 HOH A 80 480 390 HOH HOH . H 5 HOH A 81 481 392 HOH HOH . H 5 HOH A 82 482 393 HOH HOH . H 5 HOH A 83 483 394 HOH HOH . H 5 HOH A 84 484 395 HOH HOH . H 5 HOH A 85 485 396 HOH HOH . H 5 HOH A 86 486 397 HOH HOH . H 5 HOH A 87 487 398 HOH HOH . H 5 HOH A 88 488 400 HOH HOH . H 5 HOH A 89 489 401 HOH HOH . H 5 HOH A 90 490 403 HOH HOH . H 5 HOH A 91 491 404 HOH HOH . H 5 HOH A 92 492 406 HOH HOH . H 5 HOH A 93 493 407 HOH HOH . H 5 HOH A 94 494 409 HOH HOH . H 5 HOH A 95 495 410 HOH HOH . H 5 HOH A 96 496 411 HOH HOH . H 5 HOH A 97 497 412 HOH HOH . H 5 HOH A 98 498 414 HOH HOH . H 5 HOH A 99 499 415 HOH HOH . H 5 HOH A 100 500 416 HOH HOH . H 5 HOH A 101 501 417 HOH HOH . H 5 HOH A 102 502 419 HOH HOH . H 5 HOH A 103 503 420 HOH HOH . H 5 HOH A 104 504 421 HOH HOH . H 5 HOH A 105 505 422 HOH HOH . H 5 HOH A 106 506 425 HOH HOH . H 5 HOH A 107 507 426 HOH HOH . H 5 HOH A 108 508 427 HOH HOH . H 5 HOH A 109 509 428 HOH HOH . H 5 HOH A 110 510 429 HOH HOH . H 5 HOH A 111 511 433 HOH HOH . H 5 HOH A 112 512 434 HOH HOH . H 5 HOH A 113 513 435 HOH HOH . H 5 HOH A 114 514 436 HOH HOH . H 5 HOH A 115 515 437 HOH HOH . H 5 HOH A 116 516 438 HOH HOH . H 5 HOH A 117 517 439 HOH HOH . H 5 HOH A 118 518 440 HOH HOH . H 5 HOH A 119 519 441 HOH HOH . H 5 HOH A 120 520 442 HOH HOH . H 5 HOH A 121 521 443 HOH HOH . H 5 HOH A 122 522 444 HOH HOH . H 5 HOH A 123 523 446 HOH HOH . H 5 HOH A 124 524 448 HOH HOH . H 5 HOH A 125 525 449 HOH HOH . H 5 HOH A 126 526 450 HOH HOH . H 5 HOH A 127 527 451 HOH HOH . H 5 HOH A 128 528 452 HOH HOH . H 5 HOH A 129 529 453 HOH HOH . H 5 HOH A 130 530 454 HOH HOH . H 5 HOH A 131 531 455 HOH HOH . H 5 HOH A 132 532 456 HOH HOH . H 5 HOH A 133 533 457 HOH HOH . H 5 HOH A 134 534 458 HOH HOH . H 5 HOH A 135 535 459 HOH HOH . H 5 HOH A 136 536 460 HOH HOH . H 5 HOH A 137 537 461 HOH HOH . H 5 HOH A 138 538 463 HOH HOH . H 5 HOH A 139 539 464 HOH HOH . H 5 HOH A 140 540 465 HOH HOH . H 5 HOH A 141 541 466 HOH HOH . H 5 HOH A 142 542 467 HOH HOH . H 5 HOH A 143 543 468 HOH HOH . I 5 HOH B 1 101 368 HOH HOH . J 5 HOH G 1 101 423 HOH HOH . J 5 HOH G 2 102 424 HOH HOH . J 5 HOH G 3 103 430 HOH HOH . J 5 HOH G 4 104 431 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . E 4 -4.026 27.49 23.651 1 31.99 ? C1 EDO 302 A 1 HETATM 2 O O1 EDO . . . E 4 -4.342 28.886 23.519 1 35.51 ? O1 EDO 302 A 1 HETATM 3 C C2 EDO . . . E 4 -2.853 27.351 24.615 1 31.47 ? C2 EDO 302 A 1 HETATM 4 O O2 EDO . . . E 4 -3.235 27.882 25.886 1 32.24 ? O2 EDO 302 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 261 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #