data_4M99 # _model_server_result.job_id z7nR_HQBZz47E1H2EGArzg _model_server_result.datetime_utc '2025-01-11 09:58:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4m99 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":501}' # _entry.id 4M99 # _exptl.entry_id 4M99 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 809.571 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ACETYL COENZYME *A' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4M99 _cell.length_a 97.66 _cell.length_b 97.66 _cell.length_c 173.91 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4M99 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 F N N ? 2 G N N # _chem_comp.formula 'C23 H38 N7 O17 P3 S' _chem_comp.formula_weight 809.571 _chem_comp.id ACO _chem_comp.mon_nstd_flag . _chem_comp.name 'ACETYL COENZYME *A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A ACO sing 1 n y N1A C6A ACO doub 2 n y C2A N3A ACO doub 3 n y C2A H2A ACO sing 4 n n N3A C4A ACO sing 5 n y C4A C5A ACO doub 6 n y C4A N9A ACO sing 7 n y C5A C6A ACO sing 8 n y C5A N7A ACO sing 9 n y C6A N6A ACO sing 10 n n N6A H61A ACO sing 11 n n N6A H62A ACO sing 12 n n N7A C8A ACO doub 13 n y C8A N9A ACO sing 14 n y C8A H8A ACO sing 15 n n N9A C1B ACO sing 16 n n C1B C2B ACO sing 17 n n C1B O4B ACO sing 18 n n C1B H1B ACO sing 19 n n C2B O2B ACO sing 20 n n C2B C3B ACO sing 21 n n C2B H2B ACO sing 22 n n O2B HO2A ACO sing 23 n n C3B O3B ACO sing 24 n n C3B C4B ACO sing 25 n n C3B H3B ACO sing 26 n n O3B P3B ACO sing 27 n n P3B O7A ACO doub 28 n n P3B O8A ACO sing 29 n n P3B O9A ACO sing 30 n n O8A HOA8 ACO sing 31 n n O9A HOA9 ACO sing 32 n n C4B O4B ACO sing 33 n n C4B C5B ACO sing 34 n n C4B H4B ACO sing 35 n n C5B O5B ACO sing 36 n n C5B H51A ACO sing 37 n n C5B H52A ACO sing 38 n n O5B P1A ACO sing 39 n n P1A O1A ACO doub 40 n n P1A O2A ACO sing 41 n n P1A O3A ACO sing 42 n n O2A HOA2 ACO sing 43 n n O3A P2A ACO sing 44 n n P2A O4A ACO doub 45 n n P2A O5A ACO sing 46 n n P2A O6A ACO sing 47 n n O5A HOA5 ACO sing 48 n n O6A CCP ACO sing 49 n n CBP CCP ACO sing 50 n n CBP CDP ACO sing 51 n n CBP CEP ACO sing 52 n n CBP CAP ACO sing 53 n n CCP H121 ACO sing 54 n n CCP H122 ACO sing 55 n n CDP H131 ACO sing 56 n n CDP H132 ACO sing 57 n n CDP H133 ACO sing 58 n n CEP H141 ACO sing 59 n n CEP H142 ACO sing 60 n n CEP H143 ACO sing 61 n n CAP OAP ACO sing 62 n n CAP C9P ACO sing 63 n n CAP H10 ACO sing 64 n n OAP HO1 ACO sing 65 n n C9P O9P ACO doub 66 n n C9P N8P ACO sing 67 n n N8P C7P ACO sing 68 n n N8P HN8 ACO sing 69 n n C7P C6P ACO sing 70 n n C7P H71 ACO sing 71 n n C7P H72 ACO sing 72 n n C6P C5P ACO sing 73 n n C6P H61 ACO sing 74 n n C6P H62 ACO sing 75 n n C5P O5P ACO doub 76 n n C5P N4P ACO sing 77 n n N4P C3P ACO sing 78 n n N4P HN4 ACO sing 79 n n C3P C2P ACO sing 80 n n C3P H31 ACO sing 81 n n C3P H32 ACO sing 82 n n C2P S1P ACO sing 83 n n C2P H21 ACO sing 84 n n C2P H22 ACO sing 85 n n S1P C ACO sing 86 n n C O ACO doub 87 n n C CH3 ACO sing 88 n n CH3 HH31 ACO sing 89 n n CH3 HH32 ACO sing 90 n n CH3 HH33 ACO sing 91 n n # _atom_sites.entry_id 4M99 _atom_sites.fract_transf_matrix[1][1] 0.01024 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01024 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00575 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 ACO A 1 501 3 ACO ACO . E 3 NA A 1 502 3 NA NA . F 2 ACO B 1 501 2 ACO ACO . G 2 ACO C 1 501 1 ACO ACO . H 4 HOH A 1 601 1 HOH HOH . H 4 HOH A 2 602 4 HOH HOH . H 4 HOH A 3 603 9 HOH HOH . H 4 HOH A 4 604 10 HOH HOH . H 4 HOH A 5 605 11 HOH HOH . H 4 HOH A 6 606 17 HOH HOH . H 4 HOH A 7 607 18 HOH HOH . H 4 HOH A 8 608 23 HOH HOH . H 4 HOH A 9 609 24 HOH HOH . H 4 HOH A 10 610 27 HOH HOH . H 4 HOH A 11 611 34 HOH HOH . H 4 HOH A 12 612 39 HOH HOH . H 4 HOH A 13 613 40 HOH HOH . H 4 HOH A 14 614 41 HOH HOH . H 4 HOH A 15 615 42 HOH HOH . H 4 HOH A 16 616 43 HOH HOH . H 4 HOH A 17 617 46 HOH HOH . H 4 HOH A 18 618 47 HOH HOH . H 4 HOH A 19 619 49 HOH HOH . H 4 HOH A 20 620 50 HOH HOH . H 4 HOH A 21 621 51 HOH HOH . H 4 HOH A 22 622 52 HOH HOH . H 4 HOH A 23 623 53 HOH HOH . H 4 HOH A 24 624 57 HOH HOH . H 4 HOH A 25 625 59 HOH HOH . H 4 HOH A 26 626 60 HOH HOH . H 4 HOH A 27 627 61 HOH HOH . H 4 HOH A 28 628 62 HOH HOH . H 4 HOH A 29 629 63 HOH HOH . H 4 HOH A 30 630 68 HOH HOH . H 4 HOH A 31 631 71 HOH HOH . H 4 HOH A 32 632 72 HOH HOH . H 4 HOH A 33 633 75 HOH HOH . H 4 HOH A 34 634 76 HOH HOH . H 4 HOH A 35 635 79 HOH HOH . H 4 HOH A 36 636 83 HOH HOH . H 4 HOH A 37 637 86 HOH HOH . H 4 HOH A 38 638 105 HOH HOH . H 4 HOH A 39 639 107 HOH HOH . H 4 HOH A 40 640 109 HOH HOH . H 4 HOH A 41 641 111 HOH HOH . H 4 HOH A 42 642 114 HOH HOH . H 4 HOH A 43 643 115 HOH HOH . H 4 HOH A 44 644 118 HOH HOH . H 4 HOH A 45 645 120 HOH HOH . H 4 HOH A 46 646 124 HOH HOH . H 4 HOH A 47 647 130 HOH HOH . H 4 HOH A 48 648 132 HOH HOH . H 4 HOH A 49 649 133 HOH HOH . H 4 HOH A 50 650 135 HOH HOH . H 4 HOH A 51 651 137 HOH HOH . H 4 HOH A 52 652 138 HOH HOH . H 4 HOH A 53 653 139 HOH HOH . H 4 HOH A 54 654 140 HOH HOH . H 4 HOH A 55 655 141 HOH HOH . H 4 HOH A 56 656 142 HOH HOH . H 4 HOH A 57 657 143 HOH HOH . H 4 HOH A 58 658 144 HOH HOH . H 4 HOH A 59 659 146 HOH HOH . H 4 HOH A 60 660 147 HOH HOH . I 4 HOH B 1 601 7 HOH HOH . I 4 HOH B 2 602 8 HOH HOH . I 4 HOH B 3 603 14 HOH HOH . I 4 HOH B 4 604 15 HOH HOH . I 4 HOH B 5 605 16 HOH HOH . I 4 HOH B 6 606 19 HOH HOH . I 4 HOH B 7 607 26 HOH HOH . I 4 HOH B 8 608 31 HOH HOH . I 4 HOH B 9 609 32 HOH HOH . I 4 HOH B 10 610 33 HOH HOH . I 4 HOH B 11 611 37 HOH HOH . I 4 HOH B 12 612 38 HOH HOH . I 4 HOH B 13 613 45 HOH HOH . I 4 HOH B 14 614 54 HOH HOH . I 4 HOH B 15 615 58 HOH HOH . I 4 HOH B 16 616 65 HOH HOH . I 4 HOH B 17 617 66 HOH HOH . I 4 HOH B 18 618 67 HOH HOH . I 4 HOH B 19 619 69 HOH HOH . I 4 HOH B 20 620 81 HOH HOH . I 4 HOH B 21 621 82 HOH HOH . I 4 HOH B 22 622 84 HOH HOH . I 4 HOH B 23 623 85 HOH HOH . I 4 HOH B 24 624 93 HOH HOH . I 4 HOH B 25 625 94 HOH HOH . I 4 HOH B 26 626 95 HOH HOH . I 4 HOH B 27 627 102 HOH HOH . I 4 HOH B 28 628 106 HOH HOH . I 4 HOH B 29 629 108 HOH HOH . I 4 HOH B 30 630 123 HOH HOH . I 4 HOH B 31 631 126 HOH HOH . I 4 HOH B 32 632 128 HOH HOH . I 4 HOH B 33 633 134 HOH HOH . J 4 HOH C 1 601 2 HOH HOH . J 4 HOH C 2 602 3 HOH HOH . J 4 HOH C 3 603 5 HOH HOH . J 4 HOH C 4 604 6 HOH HOH . J 4 HOH C 5 605 12 HOH HOH . J 4 HOH C 6 606 13 HOH HOH . J 4 HOH C 7 607 20 HOH HOH . J 4 HOH C 8 608 21 HOH HOH . J 4 HOH C 9 609 22 HOH HOH . J 4 HOH C 10 610 25 HOH HOH . J 4 HOH C 11 611 28 HOH HOH . J 4 HOH C 12 612 29 HOH HOH . J 4 HOH C 13 613 30 HOH HOH . J 4 HOH C 14 614 35 HOH HOH . J 4 HOH C 15 615 36 HOH HOH . J 4 HOH C 16 616 44 HOH HOH . J 4 HOH C 17 617 48 HOH HOH . J 4 HOH C 18 618 55 HOH HOH . J 4 HOH C 19 619 56 HOH HOH . J 4 HOH C 20 620 64 HOH HOH . J 4 HOH C 21 621 70 HOH HOH . J 4 HOH C 22 622 73 HOH HOH . J 4 HOH C 23 623 74 HOH HOH . J 4 HOH C 24 624 77 HOH HOH . J 4 HOH C 25 625 78 HOH HOH . J 4 HOH C 26 626 88 HOH HOH . J 4 HOH C 27 627 89 HOH HOH . J 4 HOH C 28 628 90 HOH HOH . J 4 HOH C 29 629 91 HOH HOH . J 4 HOH C 30 630 96 HOH HOH . J 4 HOH C 31 631 97 HOH HOH . J 4 HOH C 32 632 104 HOH HOH . J 4 HOH C 33 633 110 HOH HOH . J 4 HOH C 34 634 112 HOH HOH . J 4 HOH C 35 635 113 HOH HOH . J 4 HOH C 36 636 116 HOH HOH . J 4 HOH C 37 637 117 HOH HOH . J 4 HOH C 38 638 121 HOH HOH . J 4 HOH C 39 639 122 HOH HOH . J 4 HOH C 40 640 125 HOH HOH . J 4 HOH C 41 641 127 HOH HOH . J 4 HOH C 42 642 129 HOH HOH . J 4 HOH C 43 643 131 HOH HOH . J 4 HOH C 44 644 136 HOH HOH . J 4 HOH C 45 645 149 HOH HOH . J 4 HOH C 46 646 161 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A ACO . . . F 2 -15.58 17.115 -6.849 1 71.08 ? N1A ACO 501 B 1 HETATM 2 C C2A ACO . . . F 2 -15.171 17.118 -5.56 1 71.87 ? C2A ACO 501 B 1 HETATM 3 N N3A ACO . . . F 2 -15.681 17.933 -4.612 1 78.82 ? N3A ACO 501 B 1 HETATM 4 C C4A ACO . . . F 2 -16.663 18.824 -4.914 1 81.65 ? C4A ACO 501 B 1 HETATM 5 C C5A ACO . . . F 2 -17.154 18.879 -6.305 1 80.76 ? C5A ACO 501 B 1 HETATM 6 C C6A ACO . . . F 2 -16.549 17.951 -7.295 1 72.38 ? C6A ACO 501 B 1 HETATM 7 N N6A ACO . . . F 2 -16.963 17.955 -8.588 1 63.39 ? N6A ACO 501 B 1 HETATM 8 N N7A ACO . . . F 2 -18.109 19.828 -6.345 1 84.44 ? N7A ACO 501 B 1 HETATM 9 C C8A ACO . . . F 2 -18.222 20.336 -5.092 1 89.23 ? C8A ACO 501 B 1 HETATM 10 N N9A ACO . . . F 2 -17.363 19.747 -4.235 1 90.35 ? N9A ACO 501 B 1 HETATM 11 C C1B ACO . . . F 2 -17.264 20.089 -2.788 1 93.59 ? C1B ACO 501 B 1 HETATM 12 C C2B ACO . . . F 2 -16.128 21.058 -2.484 1 95.24 ? C2B ACO 501 B 1 HETATM 13 O O2B ACO . . . F 2 -15.026 20.38 -1.877 1 99.07 ? O2B ACO 501 B 1 HETATM 14 C C3B ACO . . . F 2 -16.714 22.021 -1.479 1 100.23 ? C3B ACO 501 B 1 HETATM 15 O O3B ACO . . . F 2 -16.523 21.498 -0.169 1 107.8 ? O3B ACO 501 B 1 HETATM 16 P P3B ACO . . . F 2 -15.866 22.338 1.038 1 111.11 ? P3B ACO 501 B 1 HETATM 17 O O7A ACO . . . F 2 -15.871 23.782 0.584 1 98.43 ? O7A ACO 501 B 1 HETATM 18 O O8A ACO . . . F 2 -16.833 22.054 2.162 1 111.87 ? O8A ACO 501 B 1 HETATM 19 O O9A ACO . . . F 2 -14.5 21.71 1.207 1 103.99 ? O9A ACO 501 B 1 HETATM 20 C C4B ACO . . . F 2 -18.202 21.98 -1.744 1 94.18 ? C4B ACO 501 B 1 HETATM 21 O O4B ACO . . . F 2 -18.48 20.737 -2.395 1 89.9 ? O4B ACO 501 B 1 HETATM 22 C C5B ACO . . . F 2 -18.626 23.14 -2.63 1 91.58 ? C5B ACO 501 B 1 HETATM 23 O O5B ACO . . . F 2 -19.954 22.877 -3.054 1 90.82 ? O5B ACO 501 B 1 HETATM 24 P P1A ACO . . . F 2 -20.636 23.651 -4.289 1 95.95 ? P1A ACO 501 B 1 HETATM 25 O O1A ACO . . . F 2 -19.55 23.993 -5.281 1 95.73 ? O1A ACO 501 B 1 HETATM 26 O O2A ACO . . . F 2 -21.547 24.739 -3.773 1 95.7 ? O2A ACO 501 B 1 HETATM 27 O O3A ACO . . . F 2 -21.522 22.417 -4.834 1 92.94 ? O3A ACO 501 B 1 HETATM 28 P P2A ACO . . . F 2 -22.913 22.563 -5.63 1 97.06 ? P2A ACO 501 B 1 HETATM 29 O O4A ACO . . . F 2 -24.053 22.284 -4.671 1 93.48 ? O4A ACO 501 B 1 HETATM 30 O O5A ACO . . . F 2 -22.876 23.834 -6.451 1 88.44 ? O5A ACO 501 B 1 HETATM 31 O O6A ACO . . . F 2 -22.782 21.295 -6.615 1 95.44 ? O6A ACO 501 B 1 HETATM 32 C CBP ACO . . . F 2 -21.481 19.947 -8.201 1 81.41 ? CBP ACO 501 B 1 HETATM 33 C CCP ACO . . . F 2 -21.47 20.875 -6.992 1 87.22 ? CCP ACO 501 B 1 HETATM 34 C CDP ACO . . . F 2 -22.866 19.916 -8.844 1 77.04 ? CDP ACO 501 B 1 HETATM 35 C CEP ACO . . . F 2 -21.067 18.543 -7.772 1 75.66 ? CEP ACO 501 B 1 HETATM 36 C CAP ACO . . . F 2 -20.432 20.532 -9.15 1 82.55 ? CAP ACO 501 B 1 HETATM 37 O OAP ACO . . . F 2 -19.257 20.885 -8.397 1 80.88 ? OAP ACO 501 B 1 HETATM 38 C C9P ACO . . . F 2 -20.066 19.617 -10.294 1 74.41 ? C9P ACO 501 B 1 HETATM 39 O O9P ACO . . . F 2 -19.043 18.949 -10.253 1 69.66 ? O9P ACO 501 B 1 HETATM 40 N N8P ACO . . . F 2 -20.897 19.612 -11.334 1 65.35 ? N8P ACO 501 B 1 HETATM 41 C C7P ACO . . . F 2 -20.465 19.166 -12.634 1 66.24 ? C7P ACO 501 B 1 HETATM 42 C C6P ACO . . . F 2 -20.369 20.302 -13.646 1 69.47 ? C6P ACO 501 B 1 HETATM 43 C C5P ACO . . . F 2 -20.043 19.672 -14.976 1 60.48 ? C5P ACO 501 B 1 HETATM 44 O O5P ACO . . . F 2 -19.872 18.473 -15.06 1 57.27 ? O5P ACO 501 B 1 HETATM 45 N N4P ACO . . . F 2 -19.968 20.463 -16.032 1 65.47 ? N4P ACO 501 B 1 HETATM 46 C C3P ACO . . . F 2 -20.465 20.007 -17.314 1 59.15 ? C3P ACO 501 B 1 HETATM 47 C C2P ACO . . . F 2 -20.434 21.156 -18.299 1 57.94 ? C2P ACO 501 B 1 HETATM 48 S S1P ACO . . . F 2 -21.076 20.635 -19.85 1 68.88 ? S1P ACO 501 B 1 HETATM 49 C C ACO . . . F 2 -20.117 21.623 -20.801 1 56.15 ? C ACO 501 B 1 HETATM 50 O O ACO . . . F 2 -19.164 22.19 -20.291 1 57.53 ? O ACO 501 B 1 HETATM 51 C CH3 ACO . . . F 2 -20.439 21.802 -22.248 1 51.54 ? CH3 ACO 501 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 51 #