data_4M9W # _model_server_result.job_id KkLbggO6cSTNAaqku6JbMg _model_server_result.datetime_utc '2024-11-25 11:40:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4m9w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":200}' # _entry.id 4M9W # _exptl.entry_id 4M9W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.84 _cell.angle_gamma 90 _cell.entry_id 4M9W _cell.length_a 40.183 _cell.length_b 87.488 _cell.length_c 42.29 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4M9W _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,F 1 1 B,D,E,G 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O PRO 31 A PRO 31 1_555 C NA NA . A NA 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.488 ? metalc ? metalc2 A O ILE 34 A ILE 34 1_555 C NA NA . A NA 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? metalc ? metalc3 A O ASP 35 A ASP 35 1_555 C NA NA . A NA 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.855 ? metalc ? metalc4 A O VAL 37 A VAL 37 1_555 C NA NA . A NA 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc5 C NA NA . A NA 200 1_555 F O HOH . A HOH 323 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? metalc ? metalc6 C NA NA . A NA 200 1_555 F O HOH . A HOH 351 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.622 ? metalc ? metalc7 B O PRO 31 B PRO 31 1_555 D NA NA . B NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc8 B O ILE 34 B ILE 34 1_555 D NA NA . B NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc9 B O ASP 35 B ASP 35 1_555 D NA NA . B NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.767 ? metalc ? metalc10 B O VAL 37 B VAL 37 1_555 D NA NA . B NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc11 D NA NA . B NA 201 1_555 G O HOH . B HOH 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.674 ? metalc ? metalc12 D NA NA . B NA 201 1_555 G O HOH . B HOH 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.415 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4M9W _atom_sites.fract_transf_matrix[1][1] 0.024886 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002547 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01143 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02377 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NA A 1 200 200 NA NA . D 2 NA B 1 201 200 NA NA . E 3 MES B 1 202 300 MES MES . F 4 HOH A 1 301 3 HOH HOH . F 4 HOH A 2 302 5 HOH HOH . F 4 HOH A 3 303 6 HOH HOH . F 4 HOH A 4 304 9 HOH HOH . F 4 HOH A 5 305 12 HOH HOH . F 4 HOH A 6 306 13 HOH HOH . F 4 HOH A 7 307 14 HOH HOH . F 4 HOH A 8 308 15 HOH HOH . F 4 HOH A 9 309 18 HOH HOH . F 4 HOH A 10 310 20 HOH HOH . F 4 HOH A 11 311 22 HOH HOH . F 4 HOH A 12 312 23 HOH HOH . F 4 HOH A 13 313 24 HOH HOH . F 4 HOH A 14 314 26 HOH HOH . F 4 HOH A 15 315 28 HOH HOH . F 4 HOH A 16 316 35 HOH HOH . F 4 HOH A 17 317 36 HOH HOH . F 4 HOH A 18 318 38 HOH HOH . F 4 HOH A 19 319 40 HOH HOH . F 4 HOH A 20 320 44 HOH HOH . F 4 HOH A 21 321 45 HOH HOH . F 4 HOH A 22 322 48 HOH HOH . F 4 HOH A 23 323 49 HOH HOH . F 4 HOH A 24 324 50 HOH HOH . F 4 HOH A 25 325 53 HOH HOH . F 4 HOH A 26 326 54 HOH HOH . F 4 HOH A 27 327 55 HOH HOH . F 4 HOH A 28 328 56 HOH HOH . F 4 HOH A 29 329 57 HOH HOH . F 4 HOH A 30 330 63 HOH HOH . F 4 HOH A 31 331 65 HOH HOH . F 4 HOH A 32 332 66 HOH HOH . F 4 HOH A 33 333 67 HOH HOH . F 4 HOH A 34 334 69 HOH HOH . F 4 HOH A 35 335 71 HOH HOH . F 4 HOH A 36 336 72 HOH HOH . F 4 HOH A 37 337 74 HOH HOH . F 4 HOH A 38 338 77 HOH HOH . F 4 HOH A 39 339 82 HOH HOH . F 4 HOH A 40 340 83 HOH HOH . F 4 HOH A 41 341 87 HOH HOH . F 4 HOH A 42 342 88 HOH HOH . F 4 HOH A 43 343 89 HOH HOH . F 4 HOH A 44 344 92 HOH HOH . F 4 HOH A 45 345 94 HOH HOH . F 4 HOH A 46 346 97 HOH HOH . F 4 HOH A 47 347 101 HOH HOH . F 4 HOH A 48 348 103 HOH HOH . F 4 HOH A 49 349 106 HOH HOH . F 4 HOH A 50 350 107 HOH HOH . F 4 HOH A 51 351 108 HOH HOH . F 4 HOH A 52 352 109 HOH HOH . F 4 HOH A 53 353 112 HOH HOH . F 4 HOH A 54 354 114 HOH HOH . F 4 HOH A 55 355 115 HOH HOH . F 4 HOH A 56 356 116 HOH HOH . F 4 HOH A 57 357 118 HOH HOH . F 4 HOH A 58 358 122 HOH HOH . F 4 HOH A 59 359 123 HOH HOH . F 4 HOH A 60 360 124 HOH HOH . F 4 HOH A 61 361 135 HOH HOH . F 4 HOH A 62 362 136 HOH HOH . F 4 HOH A 63 363 137 HOH HOH . F 4 HOH A 64 364 138 HOH HOH . F 4 HOH A 65 365 139 HOH HOH . F 4 HOH A 66 366 140 HOH HOH . F 4 HOH A 67 367 141 HOH HOH . F 4 HOH A 68 368 142 HOH HOH . F 4 HOH A 69 369 143 HOH HOH . F 4 HOH A 70 370 144 HOH HOH . F 4 HOH A 71 371 145 HOH HOH . F 4 HOH A 72 372 153 HOH HOH . F 4 HOH A 73 373 154 HOH HOH . F 4 HOH A 74 374 166 HOH HOH . F 4 HOH A 75 375 167 HOH HOH . F 4 HOH A 76 376 168 HOH HOH . F 4 HOH A 77 377 169 HOH HOH . F 4 HOH A 78 378 170 HOH HOH . F 4 HOH A 79 379 171 HOH HOH . F 4 HOH A 80 380 174 HOH HOH . G 4 HOH B 1 301 4 HOH HOH . G 4 HOH B 2 302 7 HOH HOH . G 4 HOH B 3 303 8 HOH HOH . G 4 HOH B 4 304 10 HOH HOH . G 4 HOH B 5 305 11 HOH HOH . G 4 HOH B 6 306 17 HOH HOH . G 4 HOH B 7 307 19 HOH HOH . G 4 HOH B 8 308 25 HOH HOH . G 4 HOH B 9 309 27 HOH HOH . G 4 HOH B 10 310 29 HOH HOH . G 4 HOH B 11 311 31 HOH HOH . G 4 HOH B 12 312 33 HOH HOH . G 4 HOH B 13 313 34 HOH HOH . G 4 HOH B 14 314 37 HOH HOH . G 4 HOH B 15 315 39 HOH HOH . G 4 HOH B 16 316 42 HOH HOH . G 4 HOH B 17 317 51 HOH HOH . G 4 HOH B 18 318 59 HOH HOH . G 4 HOH B 19 319 61 HOH HOH . G 4 HOH B 20 320 68 HOH HOH . G 4 HOH B 21 321 70 HOH HOH . G 4 HOH B 22 322 73 HOH HOH . G 4 HOH B 23 323 75 HOH HOH . G 4 HOH B 24 324 76 HOH HOH . G 4 HOH B 25 325 78 HOH HOH . G 4 HOH B 26 326 86 HOH HOH . G 4 HOH B 27 327 95 HOH HOH . G 4 HOH B 28 328 96 HOH HOH . G 4 HOH B 29 329 105 HOH HOH . G 4 HOH B 30 330 111 HOH HOH . G 4 HOH B 31 331 119 HOH HOH . G 4 HOH B 32 332 120 HOH HOH . G 4 HOH B 33 333 127 HOH HOH . G 4 HOH B 34 334 131 HOH HOH . G 4 HOH B 35 335 132 HOH HOH . G 4 HOH B 36 336 133 HOH HOH . G 4 HOH B 37 337 134 HOH HOH . G 4 HOH B 38 338 146 HOH HOH . G 4 HOH B 39 339 147 HOH HOH . G 4 HOH B 40 340 148 HOH HOH . G 4 HOH B 41 341 149 HOH HOH . G 4 HOH B 42 342 150 HOH HOH . G 4 HOH B 43 343 151 HOH HOH . G 4 HOH B 44 344 152 HOH HOH . G 4 HOH B 45 345 155 HOH HOH . G 4 HOH B 46 346 156 HOH HOH . G 4 HOH B 47 347 157 HOH HOH . G 4 HOH B 48 348 158 HOH HOH . G 4 HOH B 49 349 159 HOH HOH . G 4 HOH B 50 350 160 HOH HOH . G 4 HOH B 51 351 161 HOH HOH . G 4 HOH B 52 352 162 HOH HOH . G 4 HOH B 53 353 163 HOH HOH . G 4 HOH B 54 354 164 HOH HOH . G 4 HOH B 55 355 165 HOH HOH . G 4 HOH B 56 356 172 HOH HOH . G 4 HOH B 57 357 173 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 0.378 _atom_site.Cartn_y -7.554 _atom_site.Cartn_z 3.51 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 36.89 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 200 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #