data_4MA4 # _model_server_result.job_id Ijw3MIBNTmdjvEzRyPHjDg _model_server_result.datetime_utc '2024-11-22 21:21:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ma4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":602}' # _entry.id 4MA4 # _exptl.entry_id 4MA4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 104.061 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MALONIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4MA4 _cell.length_a 102.508 _cell.length_b 102.508 _cell.length_c 260.606 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4MA4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_665 -y+1,-x+1,-z+1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 51.254 88.774532 43.434333 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 F N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 206 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 205 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id E _struct_conn.ptnr2_label_atom_id SG2 _struct_conn.ptnr2_label_comp_id GSH _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id GSH _struct_conn.ptnr2_auth_seq_id 604 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.375 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C3 H4 O4' _chem_comp.formula_weight 104.061 _chem_comp.id MLA _chem_comp.mon_nstd_flag . _chem_comp.name 'MALONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'DICARBOXYLIC ACID C3;PROPANEDIOLIC ACID;METHANEDICARBOXYLIC ACID' # _atom_sites.entry_id 4MA4 _atom_sites.fract_transf_matrix[1][1] 0.009755 _atom_sites.fract_transf_matrix[1][2] 0.005632 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011264 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003837 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ADP A 1 601 1 ADP ADP . C 3 MLA A 1 602 1 MLA MLA . D 4 ACY A 1 603 1 ACY ACY . E 5 GSH A 1 604 1 GSH GTT . F 3 MLA A 1 605 1 MLA MLA . G 6 F6P A 1 606 1 F6P F6P . H 7 HOH A 1 701 1 HOH HOH . H 7 HOH A 2 702 2 HOH HOH . H 7 HOH A 3 703 3 HOH HOH . H 7 HOH A 4 704 4 HOH HOH . H 7 HOH A 5 705 5 HOH HOH . H 7 HOH A 6 706 6 HOH HOH . H 7 HOH A 7 707 7 HOH HOH . H 7 HOH A 8 708 10 HOH HOH . H 7 HOH A 9 709 11 HOH HOH . H 7 HOH A 10 710 12 HOH HOH . H 7 HOH A 11 711 14 HOH HOH . H 7 HOH A 12 712 16 HOH HOH . H 7 HOH A 13 713 17 HOH HOH . H 7 HOH A 14 714 18 HOH HOH . H 7 HOH A 15 715 19 HOH HOH . H 7 HOH A 16 716 21 HOH HOH . H 7 HOH A 17 717 23 HOH HOH . H 7 HOH A 18 718 24 HOH HOH . H 7 HOH A 19 719 27 HOH HOH . H 7 HOH A 20 720 28 HOH HOH . H 7 HOH A 21 721 30 HOH HOH . H 7 HOH A 22 722 31 HOH HOH . H 7 HOH A 23 723 33 HOH HOH . H 7 HOH A 24 724 34 HOH HOH . H 7 HOH A 25 725 35 HOH HOH . H 7 HOH A 26 726 37 HOH HOH . H 7 HOH A 27 727 38 HOH HOH . H 7 HOH A 28 728 39 HOH HOH . H 7 HOH A 29 729 40 HOH HOH . H 7 HOH A 30 730 41 HOH HOH . H 7 HOH A 31 731 42 HOH HOH . H 7 HOH A 32 732 43 HOH HOH . H 7 HOH A 33 733 44 HOH HOH . H 7 HOH A 34 734 47 HOH HOH . H 7 HOH A 35 735 49 HOH HOH . H 7 HOH A 36 736 51 HOH HOH . H 7 HOH A 37 737 52 HOH HOH . H 7 HOH A 38 738 55 HOH HOH . H 7 HOH A 39 739 56 HOH HOH . H 7 HOH A 40 740 57 HOH HOH . H 7 HOH A 41 741 58 HOH HOH . H 7 HOH A 42 742 59 HOH HOH . H 7 HOH A 43 743 60 HOH HOH . H 7 HOH A 44 744 62 HOH HOH . H 7 HOH A 45 745 65 HOH HOH . H 7 HOH A 46 746 67 HOH HOH . H 7 HOH A 47 747 68 HOH HOH . H 7 HOH A 48 748 71 HOH HOH . H 7 HOH A 49 749 73 HOH HOH . H 7 HOH A 50 750 74 HOH HOH . H 7 HOH A 51 751 75 HOH HOH . H 7 HOH A 52 752 80 HOH HOH . H 7 HOH A 53 753 81 HOH HOH . H 7 HOH A 54 754 83 HOH HOH . H 7 HOH A 55 755 85 HOH HOH . H 7 HOH A 56 756 86 HOH HOH . H 7 HOH A 57 757 87 HOH HOH . H 7 HOH A 58 758 88 HOH HOH . H 7 HOH A 59 759 89 HOH HOH . H 7 HOH A 60 760 91 HOH HOH . H 7 HOH A 61 761 92 HOH HOH . H 7 HOH A 62 762 94 HOH HOH . H 7 HOH A 63 763 96 HOH HOH . H 7 HOH A 64 764 99 HOH HOH . H 7 HOH A 65 765 100 HOH HOH . H 7 HOH A 66 766 101 HOH HOH . H 7 HOH A 67 767 102 HOH HOH . H 7 HOH A 68 768 103 HOH HOH . H 7 HOH A 69 769 105 HOH HOH . H 7 HOH A 70 770 107 HOH HOH . H 7 HOH A 71 771 108 HOH HOH . H 7 HOH A 72 772 110 HOH HOH . H 7 HOH A 73 773 111 HOH HOH . H 7 HOH A 74 774 112 HOH HOH . H 7 HOH A 75 775 113 HOH HOH . H 7 HOH A 76 776 116 HOH HOH . H 7 HOH A 77 777 117 HOH HOH . H 7 HOH A 78 778 118 HOH HOH . H 7 HOH A 79 779 119 HOH HOH . H 7 HOH A 80 780 120 HOH HOH . H 7 HOH A 81 781 121 HOH HOH . H 7 HOH A 82 782 126 HOH HOH . H 7 HOH A 83 783 128 HOH HOH . H 7 HOH A 84 784 129 HOH HOH . H 7 HOH A 85 785 132 HOH HOH . H 7 HOH A 86 786 133 HOH HOH . H 7 HOH A 87 787 138 HOH HOH . H 7 HOH A 88 788 139 HOH HOH . H 7 HOH A 89 789 147 HOH HOH . H 7 HOH A 90 790 148 HOH HOH . H 7 HOH A 91 791 150 HOH HOH . H 7 HOH A 92 792 151 HOH HOH . H 7 HOH A 93 793 153 HOH HOH . H 7 HOH A 94 794 156 HOH HOH . H 7 HOH A 95 795 158 HOH HOH . H 7 HOH A 96 796 162 HOH HOH . H 7 HOH A 97 797 164 HOH HOH . H 7 HOH A 98 798 166 HOH HOH . H 7 HOH A 99 799 169 HOH HOH . H 7 HOH A 100 800 170 HOH HOH . H 7 HOH A 101 801 171 HOH HOH . H 7 HOH A 102 802 177 HOH HOH . H 7 HOH A 103 803 178 HOH HOH . H 7 HOH A 104 804 179 HOH HOH . H 7 HOH A 105 805 185 HOH HOH . H 7 HOH A 106 806 188 HOH HOH . H 7 HOH A 107 807 191 HOH HOH . H 7 HOH A 108 808 197 HOH HOH . H 7 HOH A 109 809 199 HOH HOH . H 7 HOH A 110 810 201 HOH HOH . H 7 HOH A 111 811 203 HOH HOH . H 7 HOH A 112 812 211 HOH HOH . H 7 HOH A 113 813 212 HOH HOH . H 7 HOH A 114 814 224 HOH HOH . H 7 HOH A 115 815 227 HOH HOH . H 7 HOH A 116 816 228 HOH HOH . H 7 HOH A 117 817 237 HOH HOH . H 7 HOH A 118 818 242 HOH HOH . H 7 HOH A 119 819 247 HOH HOH . H 7 HOH A 120 820 252 HOH HOH . H 7 HOH A 121 821 263 HOH HOH . H 7 HOH A 122 822 266 HOH HOH . H 7 HOH A 123 823 276 HOH HOH . H 7 HOH A 124 824 280 HOH HOH . H 7 HOH A 125 825 285 HOH HOH . H 7 HOH A 126 826 288 HOH HOH . H 7 HOH A 127 827 289 HOH HOH . H 7 HOH A 128 828 290 HOH HOH . H 7 HOH A 129 829 291 HOH HOH . H 7 HOH A 130 830 312 HOH HOH . H 7 HOH A 131 831 322 HOH HOH . H 7 HOH A 132 832 323 HOH HOH . H 7 HOH A 133 833 326 HOH HOH . H 7 HOH A 134 834 1 HOH HOH . H 7 HOH A 135 835 2 HOH HOH . H 7 HOH A 136 836 3 HOH HOH . H 7 HOH A 137 837 4 HOH HOH . H 7 HOH A 138 838 5 HOH HOH . H 7 HOH A 139 839 6 HOH HOH . H 7 HOH A 140 840 7 HOH HOH . H 7 HOH A 141 841 8 HOH HOH . H 7 HOH A 142 842 9 HOH HOH . H 7 HOH A 143 843 10 HOH HOH . H 7 HOH A 144 844 11 HOH HOH . H 7 HOH A 145 845 14 HOH HOH . H 7 HOH A 146 846 15 HOH HOH . H 7 HOH A 147 847 16 HOH HOH . H 7 HOH A 148 848 17 HOH HOH . H 7 HOH A 149 849 18 HOH HOH . H 7 HOH A 150 850 19 HOH HOH . H 7 HOH A 151 851 22 HOH HOH . H 7 HOH A 152 852 23 HOH HOH . H 7 HOH A 153 853 39 HOH HOH . H 7 HOH A 154 854 45 HOH HOH . H 7 HOH A 155 855 46 HOH HOH . H 7 HOH A 156 856 1 HOH HOH . H 7 HOH A 157 857 3 HOH HOH . H 7 HOH A 158 858 4 HOH HOH . H 7 HOH A 159 859 6 HOH HOH . H 7 HOH A 160 860 2 HOH HOH . H 7 HOH A 161 861 5 HOH HOH . H 7 HOH A 162 862 6 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MLA . . . C 3 -37.213 72.596 28.24 1 67.04 ? C1 MLA 602 A 1 HETATM 2 O O1A MLA . . . C 3 -37.434 72.672 29.521 1 62.19 ? O1A MLA 602 A 1 HETATM 3 O O1B MLA . . . C 3 -36.098 72.472 27.609 1 44.08 ? O1B MLA 602 A 1 HETATM 4 C C2 MLA . . . C 3 -38.488 72.739 27.473 1 61.06 ? C2 MLA 602 A 1 HETATM 5 C C3 MLA . . . C 3 -39.533 72.346 28.526 1 60.45 ? C3 MLA 602 A 1 HETATM 6 O O3A MLA . . . C 3 -40.625 72.952 28.605 1 50.93 ? O3A MLA 602 A 1 HETATM 7 O O3B MLA . . . C 3 -39.213 71.421 29.312 1 56.54 ? O3B MLA 602 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 263 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 7 #