data_4MAV
#
_model_server_result.job_id            iu_m58Qzz_R5kX7W3uyBRw 
_model_server_result.datetime_utc      '2024-12-03 01:45:41' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4mav 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":403}' 
#
_entry.id    4MAV 
#
_exptl.entry_id    4MAV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              150.13 
_entity.id                          4 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            alpha-D-ribofuranose 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4MAV 
_cell.length_a            60.809 
_cell.length_b            66.943 
_cell.length_c            106.54 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4MAV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 5 A CYS 5 1_555 A SG CYS 30 A CYS 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? 
disulf ? disulf2 A SG CYS 278 A CYS 279 1_555 A SG CYS 342 A CYS 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? 
covale ? covale1 A ND2 ASN 39 A ASN 39 1_555 B C1 NAG . A NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.413 ? 
#
_chem_comp.formula           'C5 H10 O5' 
_chem_comp.formula_weight    150.13 
_chem_comp.id                RIB 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              alpha-D-ribofuranose 
_chem_comp.type              'd-saccharide, alpha linking' 
_chem_comp.pdbx_synonyms     alpha-D-ribose;D-ribose;ribose 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O5 C5 RIB sing 320 n n 
O5 HO5 RIB sing 321 n n 
C5 C4 RIB sing 322 n n 
C5 H51 RIB sing 323 n n 
C5 H52 RIB sing 324 n n 
C4 O4 RIB sing 325 n n 
C4 C3 RIB sing 326 n n 
C4 H4 RIB sing 327 n n 
O4 C1 RIB sing 328 n n 
C3 O3 RIB sing 329 n n 
C3 C2 RIB sing 330 n n 
C3 H3 RIB sing 331 n n 
O3 HO3 RIB sing 332 n n 
C2 O2 RIB sing 333 n n 
C2 C1 RIB sing 334 n n 
C2 H2 RIB sing 335 n n 
O2 HO2 RIB sing 336 n n 
C1 O1 RIB sing 337 n n 
C1 H1 RIB sing 338 n n 
O1 HO1 RIB sing 339 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
RIB DRibfa 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
RIB a-D-ribofuranose 'COMMON NAME' GMML 1 
RIB a-D-Ribf 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
RIB Rib 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     4MAV 
_atom_sites.fract_transf_matrix[1][1]    0.016445 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014938 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009386 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NAG A 1 401 401 NAG NAG . 
C 3 GOL A 1 402 1 GOL GOL . 
D 4 RIB A 1 403 1 RIB RIB . 
E 5 HOH A 1 501 1 HOH HOH . 
E 5 HOH A 2 502 2 HOH HOH . 
E 5 HOH A 3 503 3 HOH HOH . 
E 5 HOH A 4 504 4 HOH HOH . 
E 5 HOH A 5 505 5 HOH HOH . 
E 5 HOH A 6 506 6 HOH HOH . 
E 5 HOH A 7 507 7 HOH HOH . 
E 5 HOH A 8 508 8 HOH HOH . 
E 5 HOH A 9 509 9 HOH HOH . 
E 5 HOH A 10 510 10 HOH HOH . 
E 5 HOH A 11 511 11 HOH HOH . 
E 5 HOH A 12 512 12 HOH HOH . 
E 5 HOH A 13 513 13 HOH HOH . 
E 5 HOH A 14 514 14 HOH HOH . 
E 5 HOH A 15 515 15 HOH HOH . 
E 5 HOH A 16 516 16 HOH HOH . 
E 5 HOH A 17 517 17 HOH HOH . 
E 5 HOH A 18 518 18 HOH HOH . 
E 5 HOH A 19 519 19 HOH HOH . 
E 5 HOH A 20 520 20 HOH HOH . 
E 5 HOH A 21 521 21 HOH HOH . 
E 5 HOH A 22 522 22 HOH HOH . 
E 5 HOH A 23 523 23 HOH HOH . 
E 5 HOH A 24 524 24 HOH HOH . 
E 5 HOH A 25 525 25 HOH HOH . 
E 5 HOH A 26 526 26 HOH HOH . 
E 5 HOH A 27 527 27 HOH HOH . 
E 5 HOH A 28 528 28 HOH HOH . 
E 5 HOH A 29 529 29 HOH HOH . 
E 5 HOH A 30 530 30 HOH HOH . 
E 5 HOH A 31 531 31 HOH HOH . 
E 5 HOH A 32 532 32 HOH HOH . 
E 5 HOH A 33 533 34 HOH HOH . 
E 5 HOH A 34 534 35 HOH HOH . 
E 5 HOH A 35 535 36 HOH HOH . 
E 5 HOH A 36 536 37 HOH HOH . 
E 5 HOH A 37 537 38 HOH HOH . 
E 5 HOH A 38 538 39 HOH HOH . 
E 5 HOH A 39 539 40 HOH HOH . 
E 5 HOH A 40 540 41 HOH HOH . 
E 5 HOH A 41 541 42 HOH HOH . 
E 5 HOH A 42 542 43 HOH HOH . 
E 5 HOH A 43 543 44 HOH HOH . 
E 5 HOH A 44 544 46 HOH HOH . 
E 5 HOH A 45 545 47 HOH HOH . 
E 5 HOH A 46 546 48 HOH HOH . 
E 5 HOH A 47 547 49 HOH HOH . 
E 5 HOH A 48 548 50 HOH HOH . 
E 5 HOH A 49 549 51 HOH HOH . 
E 5 HOH A 50 550 53 HOH HOH . 
E 5 HOH A 51 551 54 HOH HOH . 
E 5 HOH A 52 552 55 HOH HOH . 
E 5 HOH A 53 553 56 HOH HOH . 
E 5 HOH A 54 554 57 HOH HOH . 
E 5 HOH A 55 555 58 HOH HOH . 
E 5 HOH A 56 556 59 HOH HOH . 
E 5 HOH A 57 557 61 HOH HOH . 
E 5 HOH A 58 558 63 HOH HOH . 
E 5 HOH A 59 559 64 HOH HOH . 
E 5 HOH A 60 560 65 HOH HOH . 
E 5 HOH A 61 561 66 HOH HOH . 
E 5 HOH A 62 562 67 HOH HOH . 
E 5 HOH A 63 563 69 HOH HOH . 
E 5 HOH A 64 564 73 HOH HOH . 
E 5 HOH A 65 565 74 HOH HOH . 
E 5 HOH A 66 566 75 HOH HOH . 
E 5 HOH A 67 567 76 HOH HOH . 
E 5 HOH A 68 568 78 HOH HOH . 
E 5 HOH A 69 569 79 HOH HOH . 
E 5 HOH A 70 570 80 HOH HOH . 
E 5 HOH A 71 571 82 HOH HOH . 
E 5 HOH A 72 572 83 HOH HOH . 
E 5 HOH A 73 573 84 HOH HOH . 
E 5 HOH A 74 574 86 HOH HOH . 
E 5 HOH A 75 575 89 HOH HOH . 
E 5 HOH A 76 576 90 HOH HOH . 
E 5 HOH A 77 577 91 HOH HOH . 
E 5 HOH A 78 578 578 HOH HOH . 
E 5 HOH A 79 579 94 HOH HOH . 
E 5 HOH A 80 580 95 HOH HOH . 
E 5 HOH A 81 581 99 HOH HOH . 
E 5 HOH A 82 582 101 HOH HOH . 
E 5 HOH A 83 583 103 HOH HOH . 
E 5 HOH A 84 584 104 HOH HOH . 
E 5 HOH A 85 585 105 HOH HOH . 
E 5 HOH A 86 586 106 HOH HOH . 
E 5 HOH A 87 587 109 HOH HOH . 
E 5 HOH A 88 588 110 HOH HOH . 
E 5 HOH A 89 589 112 HOH HOH . 
E 5 HOH A 90 590 113 HOH HOH . 
E 5 HOH A 91 591 114 HOH HOH . 
E 5 HOH A 92 592 115 HOH HOH . 
E 5 HOH A 93 593 116 HOH HOH . 
E 5 HOH A 94 594 117 HOH HOH . 
E 5 HOH A 95 595 118 HOH HOH . 
E 5 HOH A 96 596 596 HOH HOH . 
E 5 HOH A 97 597 120 HOH HOH . 
E 5 HOH A 98 598 121 HOH HOH . 
E 5 HOH A 99 599 122 HOH HOH . 
E 5 HOH A 100 600 123 HOH HOH . 
E 5 HOH A 101 601 124 HOH HOH . 
E 5 HOH A 102 602 125 HOH HOH . 
E 5 HOH A 103 603 126 HOH HOH . 
E 5 HOH A 104 604 127 HOH HOH . 
E 5 HOH A 105 605 128 HOH HOH . 
E 5 HOH A 106 606 129 HOH HOH . 
E 5 HOH A 107 607 130 HOH HOH . 
E 5 HOH A 108 608 131 HOH HOH . 
E 5 HOH A 109 609 132 HOH HOH . 
E 5 HOH A 110 610 133 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O5 RIB . . . D 4 27.202 0.223 -10.9 0.7 43.16 ? O5 RIB 403 A 1 
HETATM 2 C C5 RIB . . . D 4 26.474 1.421 -10.743 0.7 40.27 ? C5 RIB 403 A 1 
HETATM 3 C C4 RIB . . . D 4 25.189 0.835 -10.237 0.7 38.04 ? C4 RIB 403 A 1 
HETATM 4 O O4 RIB . . . D 4 24.907 1.076 -8.868 0.7 37.5 ? O4 RIB 403 A 1 
HETATM 5 C C3 RIB . . . D 4 23.935 1.281 -10.9 0.7 38.21 ? C3 RIB 403 A 1 
HETATM 6 O O3 RIB . . . D 4 23.824 0.723 -12.188 0.7 37.78 ? O3 RIB 403 A 1 
HETATM 7 C C2 RIB . . . D 4 23 0.713 -9.873 0.7 39.46 ? C2 RIB 403 A 1 
HETATM 8 O O2 RIB . . . D 4 23.077 -0.705 -9.594 0.7 40.06 ? O2 RIB 403 A 1 
HETATM 9 C C1 RIB . . . D 4 23.595 1.479 -8.746 0.7 37.81 ? C1 RIB 403 A 1 
HETATM 10 O O1 RIB . . . D 4 23.076 1.124 -7.491 0.7 38.57 ? O1 RIB 403 A 1 
#
_model_server_stats.io_time_ms              86 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           311 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           10 
#