data_4MB2 # _model_server_result.job_id GwVwVSOlZpdSJPs6ZA7o6g _model_server_result.datetime_utc '2025-03-04 08:48:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4mb2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":301}' # _entry.id 4MB2 # _exptl.entry_id 4MB2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.38 _cell.angle_gamma 90 _cell.entry_id 4MB2 _cell.length_a 266.428 _cell.length_b 60.909 _cell.length_c 75.241 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4MB2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,J,K 1 1 C,D,H,I,L,M 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 G N N ? 2 H N N ? 2 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 E O1B ATP . A ATP 301 1_555 F MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? metalc ? metalc2 E O3G ATP . A ATP 301 1_555 F MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.516 ? metalc ? metalc3 E O1A ATP . A ATP 301 1_555 F MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.825 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 4MB2 _atom_sites.fract_transf_matrix[1][1] 0.003753 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000156 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016418 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013302 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 ATP A 1 301 301 ATP ATP . F 3 MG A 1 302 302 MG MG . G 2 ATP B 1 301 301 ATP ATP . H 2 ATP C 1 301 301 ATP ATP . I 2 ATP D 1 301 301 ATP ATP . J 4 HOH A 1 401 401 HOH HOH . J 4 HOH A 2 402 402 HOH HOH . J 4 HOH A 3 403 403 HOH HOH . J 4 HOH A 4 404 404 HOH HOH . J 4 HOH A 5 405 405 HOH HOH . J 4 HOH A 6 406 406 HOH HOH . J 4 HOH A 7 407 407 HOH HOH . J 4 HOH A 8 408 408 HOH HOH . J 4 HOH A 9 409 409 HOH HOH . J 4 HOH A 10 410 410 HOH HOH . J 4 HOH A 11 411 411 HOH HOH . J 4 HOH A 12 412 412 HOH HOH . J 4 HOH A 13 413 413 HOH HOH . J 4 HOH A 14 414 414 HOH HOH . J 4 HOH A 15 415 415 HOH HOH . J 4 HOH A 16 416 416 HOH HOH . J 4 HOH A 17 417 417 HOH HOH . J 4 HOH A 18 418 418 HOH HOH . J 4 HOH A 19 419 419 HOH HOH . J 4 HOH A 20 420 420 HOH HOH . J 4 HOH A 21 421 421 HOH HOH . J 4 HOH A 22 422 422 HOH HOH . J 4 HOH A 23 423 423 HOH HOH . J 4 HOH A 24 424 424 HOH HOH . J 4 HOH A 25 425 425 HOH HOH . J 4 HOH A 26 426 426 HOH HOH . J 4 HOH A 27 427 427 HOH HOH . J 4 HOH A 28 428 428 HOH HOH . J 4 HOH A 29 429 429 HOH HOH . J 4 HOH A 30 430 430 HOH HOH . J 4 HOH A 31 431 431 HOH HOH . J 4 HOH A 32 432 432 HOH HOH . J 4 HOH A 33 433 433 HOH HOH . J 4 HOH A 34 434 434 HOH HOH . J 4 HOH A 35 435 435 HOH HOH . J 4 HOH A 36 436 436 HOH HOH . J 4 HOH A 37 437 437 HOH HOH . J 4 HOH A 38 438 438 HOH HOH . J 4 HOH A 39 439 439 HOH HOH . J 4 HOH A 40 440 440 HOH HOH . J 4 HOH A 41 441 441 HOH HOH . J 4 HOH A 42 442 442 HOH HOH . J 4 HOH A 43 443 443 HOH HOH . J 4 HOH A 44 444 444 HOH HOH . J 4 HOH A 45 445 445 HOH HOH . J 4 HOH A 46 446 446 HOH HOH . J 4 HOH A 47 447 447 HOH HOH . J 4 HOH A 48 448 448 HOH HOH . J 4 HOH A 49 449 449 HOH HOH . J 4 HOH A 50 450 450 HOH HOH . J 4 HOH A 51 451 451 HOH HOH . J 4 HOH A 52 452 452 HOH HOH . K 4 HOH B 1 401 401 HOH HOH . K 4 HOH B 2 402 402 HOH HOH . K 4 HOH B 3 403 403 HOH HOH . K 4 HOH B 4 404 404 HOH HOH . K 4 HOH B 5 405 405 HOH HOH . K 4 HOH B 6 406 406 HOH HOH . K 4 HOH B 7 407 407 HOH HOH . K 4 HOH B 8 408 408 HOH HOH . K 4 HOH B 9 409 409 HOH HOH . K 4 HOH B 10 410 410 HOH HOH . K 4 HOH B 11 411 411 HOH HOH . K 4 HOH B 12 412 412 HOH HOH . K 4 HOH B 13 413 413 HOH HOH . K 4 HOH B 14 414 414 HOH HOH . K 4 HOH B 15 415 415 HOH HOH . K 4 HOH B 16 416 416 HOH HOH . K 4 HOH B 17 417 417 HOH HOH . K 4 HOH B 18 418 418 HOH HOH . K 4 HOH B 19 419 419 HOH HOH . K 4 HOH B 20 420 420 HOH HOH . K 4 HOH B 21 421 421 HOH HOH . K 4 HOH B 22 422 422 HOH HOH . K 4 HOH B 23 423 423 HOH HOH . K 4 HOH B 24 424 424 HOH HOH . K 4 HOH B 25 425 425 HOH HOH . K 4 HOH B 26 426 426 HOH HOH . K 4 HOH B 27 427 427 HOH HOH . K 4 HOH B 28 428 428 HOH HOH . K 4 HOH B 29 429 429 HOH HOH . K 4 HOH B 30 430 430 HOH HOH . K 4 HOH B 31 431 431 HOH HOH . K 4 HOH B 32 432 432 HOH HOH . K 4 HOH B 33 433 433 HOH HOH . K 4 HOH B 34 434 434 HOH HOH . K 4 HOH B 35 435 435 HOH HOH . K 4 HOH B 36 436 436 HOH HOH . K 4 HOH B 37 437 437 HOH HOH . K 4 HOH B 38 438 438 HOH HOH . K 4 HOH B 39 439 439 HOH HOH . K 4 HOH B 40 440 440 HOH HOH . K 4 HOH B 41 441 441 HOH HOH . K 4 HOH B 42 442 442 HOH HOH . K 4 HOH B 43 443 443 HOH HOH . K 4 HOH B 44 444 444 HOH HOH . K 4 HOH B 45 445 445 HOH HOH . K 4 HOH B 46 446 446 HOH HOH . K 4 HOH B 47 447 447 HOH HOH . K 4 HOH B 48 448 448 HOH HOH . K 4 HOH B 49 449 449 HOH HOH . K 4 HOH B 50 450 450 HOH HOH . K 4 HOH B 51 451 451 HOH HOH . K 4 HOH B 52 452 452 HOH HOH . K 4 HOH B 53 453 453 HOH HOH . K 4 HOH B 54 454 454 HOH HOH . K 4 HOH B 55 455 455 HOH HOH . K 4 HOH B 56 456 456 HOH HOH . K 4 HOH B 57 457 457 HOH HOH . L 4 HOH C 1 401 401 HOH HOH . L 4 HOH C 2 402 402 HOH HOH . L 4 HOH C 3 403 403 HOH HOH . L 4 HOH C 4 404 404 HOH HOH . L 4 HOH C 5 405 405 HOH HOH . L 4 HOH C 6 406 406 HOH HOH . L 4 HOH C 7 407 407 HOH HOH . L 4 HOH C 8 408 408 HOH HOH . L 4 HOH C 9 409 409 HOH HOH . L 4 HOH C 10 410 410 HOH HOH . L 4 HOH C 11 411 411 HOH HOH . L 4 HOH C 12 412 412 HOH HOH . L 4 HOH C 13 413 413 HOH HOH . L 4 HOH C 14 414 414 HOH HOH . L 4 HOH C 15 415 415 HOH HOH . L 4 HOH C 16 416 416 HOH HOH . L 4 HOH C 17 417 417 HOH HOH . L 4 HOH C 18 418 418 HOH HOH . L 4 HOH C 19 419 419 HOH HOH . L 4 HOH C 20 420 420 HOH HOH . L 4 HOH C 21 421 421 HOH HOH . L 4 HOH C 22 422 422 HOH HOH . L 4 HOH C 23 423 423 HOH HOH . L 4 HOH C 24 424 424 HOH HOH . L 4 HOH C 25 425 425 HOH HOH . L 4 HOH C 26 426 426 HOH HOH . L 4 HOH C 27 427 427 HOH HOH . L 4 HOH C 28 428 428 HOH HOH . L 4 HOH C 29 429 429 HOH HOH . L 4 HOH C 30 430 430 HOH HOH . L 4 HOH C 31 431 431 HOH HOH . L 4 HOH C 32 432 432 HOH HOH . L 4 HOH C 33 433 433 HOH HOH . L 4 HOH C 34 434 434 HOH HOH . L 4 HOH C 35 435 435 HOH HOH . L 4 HOH C 36 436 436 HOH HOH . L 4 HOH C 37 437 437 HOH HOH . L 4 HOH C 38 438 438 HOH HOH . L 4 HOH C 39 439 439 HOH HOH . M 4 HOH D 1 401 401 HOH HOH . M 4 HOH D 2 402 402 HOH HOH . M 4 HOH D 3 403 403 HOH HOH . M 4 HOH D 4 404 404 HOH HOH . M 4 HOH D 5 405 405 HOH HOH . M 4 HOH D 6 406 406 HOH HOH . M 4 HOH D 7 407 407 HOH HOH . M 4 HOH D 8 408 408 HOH HOH . M 4 HOH D 9 409 409 HOH HOH . M 4 HOH D 10 410 410 HOH HOH . M 4 HOH D 11 411 411 HOH HOH . M 4 HOH D 12 412 412 HOH HOH . M 4 HOH D 13 413 413 HOH HOH . M 4 HOH D 14 414 414 HOH HOH . M 4 HOH D 15 415 415 HOH HOH . M 4 HOH D 16 416 416 HOH HOH . M 4 HOH D 17 417 417 HOH HOH . M 4 HOH D 18 418 418 HOH HOH . M 4 HOH D 19 419 419 HOH HOH . M 4 HOH D 20 420 420 HOH HOH . M 4 HOH D 21 421 421 HOH HOH . M 4 HOH D 22 422 422 HOH HOH . M 4 HOH D 23 423 423 HOH HOH . M 4 HOH D 24 424 424 HOH HOH . M 4 HOH D 25 425 425 HOH HOH . M 4 HOH D 26 426 426 HOH HOH . M 4 HOH D 27 427 427 HOH HOH . M 4 HOH D 28 428 428 HOH HOH . M 4 HOH D 29 429 429 HOH HOH . M 4 HOH D 30 430 430 HOH HOH . M 4 HOH D 31 431 431 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . E 2 13.352 -3.373 1.71 1 107.33 ? PG ATP 301 A 1 HETATM 2 O O1G ATP . . . E 2 14.408 -4.25 1.071 1 90.98 ? O1G ATP 301 A 1 HETATM 3 O O2G ATP . . . E 2 12.137 -3.147 0.84 1 98.51 ? O2G ATP 301 A 1 HETATM 4 O O3G ATP . . . E 2 13.884 -2.125 2.387 1 80.98 ? O3G ATP 301 A 1 HETATM 5 P PB ATP . . . E 2 11.75 -3.605 3.986 1 129.16 ? PB ATP 301 A 1 HETATM 6 O O1B ATP . . . E 2 11.718 -2.101 3.793 1 102.25 ? O1B ATP 301 A 1 HETATM 7 O O2B ATP . . . E 2 10.451 -4.377 3.905 1 98.99 ? O2B ATP 301 A 1 HETATM 8 O O3B ATP . . . E 2 12.781 -4.254 2.929 1 108.64 ? O3B ATP 301 A 1 HETATM 9 P PA ATP . . . E 2 13.996 -3.652 5.789 1 118.5 ? PA ATP 301 A 1 HETATM 10 O O1A ATP . . . E 2 14.554 -2.424 5.092 1 70.49 ? O1A ATP 301 A 1 HETATM 11 O O2A ATP . . . E 2 14.767 -4.951 5.713 1 101.17 ? O2A ATP 301 A 1 HETATM 12 O O3A ATP . . . E 2 12.449 -3.953 5.402 1 104.49 ? O3A ATP 301 A 1 HETATM 13 O O5' ATP . . . E 2 13.809 -3.26 7.341 1 82.65 ? O5' ATP 301 A 1 HETATM 14 C C5' ATP . . . E 2 14.912 -2.731 8.07 1 65.61 ? C5' ATP 301 A 1 HETATM 15 C C4' ATP . . . E 2 14.604 -1.33 8.576 1 46.3 ? C4' ATP 301 A 1 HETATM 16 O O4' ATP . . . E 2 14.969 -1.281 9.954 1 36.58 ? O4' ATP 301 A 1 HETATM 17 C C3' ATP . . . E 2 15.427 -0.249 7.883 1 32.25 ? C3' ATP 301 A 1 HETATM 18 O O3' ATP . . . E 2 14.694 0.978 7.83 1 30.36 ? O3' ATP 301 A 1 HETATM 19 C C2' ATP . . . E 2 16.572 0.013 8.817 1 32.34 ? C2' ATP 301 A 1 HETATM 20 O O2' ATP . . . E 2 17.043 1.364 8.697 1 31.62 ? O2' ATP 301 A 1 HETATM 21 C C1' ATP . . . E 2 15.934 -0.261 10.158 1 29.65 ? C1' ATP 301 A 1 HETATM 22 N N9 ATP . . . E 2 16.932 -0.735 11.114 1 38.08 ? N9 ATP 301 A 1 HETATM 23 C C8 ATP . . . E 2 17.847 -1.683 10.868 1 35 ? C8 ATP 301 A 1 HETATM 24 N N7 ATP . . . E 2 18.589 -1.898 11.977 1 29.77 ? N7 ATP 301 A 1 HETATM 25 C C5 ATP . . . E 2 18.154 -1.063 12.93 1 29.95 ? C5 ATP 301 A 1 HETATM 26 C C6 ATP . . . E 2 18.509 -0.788 14.336 1 24.5 ? C6 ATP 301 A 1 HETATM 27 N N6 ATP . . . E 2 19.542 -1.437 14.901 1 36.64 ? N6 ATP 301 A 1 HETATM 28 N N1 ATP . . . E 2 17.829 0.186 14.967 1 34.7 ? N1 ATP 301 A 1 HETATM 29 C C2 ATP . . . E 2 16.778 0.847 14.385 1 28.43 ? C2 ATP 301 A 1 HETATM 30 N N3 ATP . . . E 2 16.43 0.667 13.104 1 27.86 ? N3 ATP 301 A 1 HETATM 31 C C4 ATP . . . E 2 17.061 -0.277 12.352 1 29.93 ? C4 ATP 301 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 241 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 31 #