data_4MBF # _model_server_result.job_id CHyqlSG3c7idZMUOHf6yHw _model_server_result.datetime_utc '2024-11-24 17:05:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4mbf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 4MBF # _exptl.entry_id 4MBF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 381.399 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '6-({(2R,3S)-3-carboxy-2-methyl-3-[(3-oxopropyl)amino]-2-sulfinopropyl}oxy)-6-oxohexanoic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4MBF _cell.length_a 49.517 _cell.length_b 55.197 _cell.length_c 84.042 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4MBF _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 52 A CYS 77 1_555 A SG CYS 98 A CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? covale ? covale1 A OG SER 45 A SER 70 1_555 D CAJ 2AW . A 2AW 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.53 ? # _chem_comp.formula 'C14 H23 N O9 S' _chem_comp.formula_weight 381.399 _chem_comp.id 2AW _chem_comp.mon_nstd_flag . _chem_comp.name '6-({(2R,3S)-3-carboxy-2-methyl-3-[(3-oxopropyl)amino]-2-sulfinopropyl}oxy)-6-oxohexanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OAE CAV 2AW doub 1 n n CAV CAP 2AW sing 2 n n CAV OAS 2AW sing 3 n n CAP CAN 2AW sing 4 n n OAS CG1 2AW sing 5 n n CAN CAM 2AW sing 6 n n CG1 CB 2AW sing 7 n n CG2 CB 2AW sing 8 n n OAF SAX 2AW doub 9 n n CB SAX 2AW sing 10 n n CB CA 2AW sing 11 n n CAM CAO 2AW sing 12 n n SAX OAG 2AW sing 13 n n OAH CAT 2AW doub 14 n n CAT OAC 2AW sing 15 n n CAT CAO 2AW sing 16 n n CA N 2AW sing 17 n n CA C 2AW sing 18 n n N CAL 2AW sing 19 n n O C 2AW doub 20 n n C OXT 2AW sing 21 n n CAL CAK 2AW sing 22 n n CAK CAJ 2AW sing 23 n n CAJ OAB 2AW doub 24 n n OAC H1 2AW sing 25 n n CAO H2 2AW sing 26 n n CAO H3 2AW sing 27 n n CAM H4 2AW sing 28 n n CAM H5 2AW sing 29 n n CAN H6 2AW sing 30 n n CAN H7 2AW sing 31 n n CAP H8 2AW sing 32 n n CAP H9 2AW sing 33 n n CG1 H10 2AW sing 34 n n CG1 H11 2AW sing 35 n n CG2 H12 2AW sing 36 n n CG2 H13 2AW sing 37 n n CG2 H14 2AW sing 38 n n CA H17 2AW sing 39 n n OXT H18 2AW sing 40 n n CAL H19 2AW sing 41 n n CAK H20 2AW sing 42 n n CAK H21 2AW sing 43 n n CAJ H22 2AW sing 44 n n N H23 2AW sing 45 n n CAL H24 2AW sing 46 n n OAG H15 2AW sing 47 n n # _atom_sites.entry_id 4MBF _atom_sites.fract_transf_matrix[1][1] 0.020195 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018117 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011899 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MA4 A 1 301 400 MA4 MA4 . C 2 MA4 A 1 302 400 MA4 MA4 . D 3 2AW A 1 303 1 2AW DRG . E 3 2AW A 1 304 1 2AW DRG . F 4 HOH A 1 401 2 HOH HOH . F 4 HOH A 2 402 3 HOH HOH . F 4 HOH A 3 403 4 HOH HOH . F 4 HOH A 4 404 5 HOH HOH . F 4 HOH A 5 405 6 HOH HOH . F 4 HOH A 6 406 7 HOH HOH . F 4 HOH A 7 407 8 HOH HOH . F 4 HOH A 8 408 9 HOH HOH . F 4 HOH A 9 409 10 HOH HOH . F 4 HOH A 10 410 11 HOH HOH . F 4 HOH A 11 411 12 HOH HOH . F 4 HOH A 12 412 13 HOH HOH . F 4 HOH A 13 413 14 HOH HOH . F 4 HOH A 14 414 15 HOH HOH . F 4 HOH A 15 415 16 HOH HOH . F 4 HOH A 16 416 17 HOH HOH . F 4 HOH A 17 417 18 HOH HOH . F 4 HOH A 18 418 19 HOH HOH . F 4 HOH A 19 419 20 HOH HOH . F 4 HOH A 20 420 21 HOH HOH . F 4 HOH A 21 421 22 HOH HOH . F 4 HOH A 22 422 23 HOH HOH . F 4 HOH A 23 423 24 HOH HOH . F 4 HOH A 24 424 25 HOH HOH . F 4 HOH A 25 425 26 HOH HOH . F 4 HOH A 26 426 28 HOH HOH . F 4 HOH A 27 427 29 HOH HOH . F 4 HOH A 28 428 30 HOH HOH . F 4 HOH A 29 429 31 HOH HOH . F 4 HOH A 30 430 32 HOH HOH . F 4 HOH A 31 431 33 HOH HOH . F 4 HOH A 32 432 34 HOH HOH . F 4 HOH A 33 433 35 HOH HOH . F 4 HOH A 34 434 36 HOH HOH . F 4 HOH A 35 435 37 HOH HOH . F 4 HOH A 36 436 38 HOH HOH . F 4 HOH A 37 437 39 HOH HOH . F 4 HOH A 38 438 40 HOH HOH . F 4 HOH A 39 439 41 HOH HOH . F 4 HOH A 40 440 42 HOH HOH . F 4 HOH A 41 441 43 HOH HOH . F 4 HOH A 42 442 44 HOH HOH . F 4 HOH A 43 443 45 HOH HOH . F 4 HOH A 44 444 47 HOH HOH . F 4 HOH A 45 445 48 HOH HOH . F 4 HOH A 46 446 49 HOH HOH . F 4 HOH A 47 447 51 HOH HOH . F 4 HOH A 48 448 52 HOH HOH . F 4 HOH A 49 449 53 HOH HOH . F 4 HOH A 50 450 54 HOH HOH . F 4 HOH A 51 451 55 HOH HOH . F 4 HOH A 52 452 56 HOH HOH . F 4 HOH A 53 453 57 HOH HOH . F 4 HOH A 54 454 58 HOH HOH . F 4 HOH A 55 455 59 HOH HOH . F 4 HOH A 56 456 60 HOH HOH . F 4 HOH A 57 457 61 HOH HOH . F 4 HOH A 58 458 62 HOH HOH . F 4 HOH A 59 459 63 HOH HOH . F 4 HOH A 60 460 64 HOH HOH . F 4 HOH A 61 461 65 HOH HOH . F 4 HOH A 62 462 66 HOH HOH . F 4 HOH A 63 463 67 HOH HOH . F 4 HOH A 64 464 68 HOH HOH . F 4 HOH A 65 465 69 HOH HOH . F 4 HOH A 66 466 70 HOH HOH . F 4 HOH A 67 467 71 HOH HOH . F 4 HOH A 68 468 72 HOH HOH . F 4 HOH A 69 469 73 HOH HOH . F 4 HOH A 70 470 74 HOH HOH . F 4 HOH A 71 471 75 HOH HOH . F 4 HOH A 72 472 76 HOH HOH . F 4 HOH A 73 473 77 HOH HOH . F 4 HOH A 74 474 78 HOH HOH . F 4 HOH A 75 475 79 HOH HOH . F 4 HOH A 76 476 80 HOH HOH . F 4 HOH A 77 477 81 HOH HOH . F 4 HOH A 78 478 82 HOH HOH . F 4 HOH A 79 479 83 HOH HOH . F 4 HOH A 80 480 84 HOH HOH . F 4 HOH A 81 481 85 HOH HOH . F 4 HOH A 82 482 86 HOH HOH . F 4 HOH A 83 483 87 HOH HOH . F 4 HOH A 84 484 88 HOH HOH . F 4 HOH A 85 485 89 HOH HOH . F 4 HOH A 86 486 90 HOH HOH . F 4 HOH A 87 487 91 HOH HOH . F 4 HOH A 88 488 92 HOH HOH . F 4 HOH A 89 489 93 HOH HOH . F 4 HOH A 90 490 94 HOH HOH . F 4 HOH A 91 491 95 HOH HOH . F 4 HOH A 92 492 96 HOH HOH . F 4 HOH A 93 493 97 HOH HOH . F 4 HOH A 94 494 98 HOH HOH . F 4 HOH A 95 495 99 HOH HOH . F 4 HOH A 96 496 100 HOH HOH . F 4 HOH A 97 497 101 HOH HOH . F 4 HOH A 98 498 102 HOH HOH . F 4 HOH A 99 499 103 HOH HOH . F 4 HOH A 100 500 104 HOH HOH . F 4 HOH A 101 501 105 HOH HOH . F 4 HOH A 102 502 106 HOH HOH . F 4 HOH A 103 503 107 HOH HOH . F 4 HOH A 104 504 108 HOH HOH . F 4 HOH A 105 505 109 HOH HOH . F 4 HOH A 106 506 110 HOH HOH . F 4 HOH A 107 507 111 HOH HOH . F 4 HOH A 108 508 112 HOH HOH . F 4 HOH A 109 509 113 HOH HOH . F 4 HOH A 110 510 114 HOH HOH . F 4 HOH A 111 511 115 HOH HOH . F 4 HOH A 112 512 116 HOH HOH . F 4 HOH A 113 513 117 HOH HOH . F 4 HOH A 114 514 118 HOH HOH . F 4 HOH A 115 515 119 HOH HOH . F 4 HOH A 116 516 120 HOH HOH . F 4 HOH A 117 517 121 HOH HOH . F 4 HOH A 118 518 122 HOH HOH . F 4 HOH A 119 519 123 HOH HOH . F 4 HOH A 120 520 124 HOH HOH . F 4 HOH A 121 521 125 HOH HOH . F 4 HOH A 122 522 127 HOH HOH . F 4 HOH A 123 523 129 HOH HOH . F 4 HOH A 124 524 130 HOH HOH . F 4 HOH A 125 525 131 HOH HOH . F 4 HOH A 126 526 132 HOH HOH . F 4 HOH A 127 527 133 HOH HOH . F 4 HOH A 128 528 134 HOH HOH . F 4 HOH A 129 529 135 HOH HOH . F 4 HOH A 130 530 136 HOH HOH . F 4 HOH A 131 531 137 HOH HOH . F 4 HOH A 132 532 138 HOH HOH . F 4 HOH A 133 533 139 HOH HOH . F 4 HOH A 134 534 140 HOH HOH . F 4 HOH A 135 535 141 HOH HOH . F 4 HOH A 136 536 142 HOH HOH . F 4 HOH A 137 537 143 HOH HOH . F 4 HOH A 138 538 144 HOH HOH . F 4 HOH A 139 539 146 HOH HOH . F 4 HOH A 140 540 147 HOH HOH . F 4 HOH A 141 541 148 HOH HOH . F 4 HOH A 142 542 149 HOH HOH . F 4 HOH A 143 543 150 HOH HOH . F 4 HOH A 144 544 151 HOH HOH . F 4 HOH A 145 545 153 HOH HOH . F 4 HOH A 146 546 155 HOH HOH . F 4 HOH A 147 547 156 HOH HOH . F 4 HOH A 148 548 157 HOH HOH . F 4 HOH A 149 549 159 HOH HOH . F 4 HOH A 150 550 160 HOH HOH . F 4 HOH A 151 551 161 HOH HOH . F 4 HOH A 152 552 163 HOH HOH . F 4 HOH A 153 553 164 HOH HOH . F 4 HOH A 154 554 166 HOH HOH . F 4 HOH A 155 555 167 HOH HOH . F 4 HOH A 156 556 168 HOH HOH . F 4 HOH A 157 557 169 HOH HOH . F 4 HOH A 158 558 170 HOH HOH . F 4 HOH A 159 559 172 HOH HOH . F 4 HOH A 160 560 173 HOH HOH . F 4 HOH A 161 561 174 HOH HOH . F 4 HOH A 162 562 175 HOH HOH . F 4 HOH A 163 563 176 HOH HOH . F 4 HOH A 164 564 177 HOH HOH . F 4 HOH A 165 565 178 HOH HOH . F 4 HOH A 166 566 179 HOH HOH . F 4 HOH A 167 567 180 HOH HOH . F 4 HOH A 168 568 181 HOH HOH . F 4 HOH A 169 569 182 HOH HOH . F 4 HOH A 170 570 183 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAC 2AW . A . D 3 13.768 33.055 3.129 0.6 26.09 ? OAC 2AW 303 A 1 HETATM 2 O OAC 2AW . B . D 3 10.333 31.857 3.746 0.2 16.49 ? OAC 2AW 303 A 1 HETATM 3 C CAT 2AW . A . D 3 12.837 33.838 2.885 0.6 25.77 ? CAT 2AW 303 A 1 HETATM 4 C CAT 2AW . B . D 3 11.108 32.811 3.523 0.2 16.99 ? CAT 2AW 303 A 1 HETATM 5 O OAH 2AW . A . D 3 12.996 35.007 2.462 0.6 26.51 ? OAH 2AW 303 A 1 HETATM 6 O OAH 2AW . B . D 3 12.348 32.808 3.684 0.2 16.15 ? OAH 2AW 303 A 1 HETATM 7 C CAO 2AW . A . D 3 11.415 33.314 3.186 0.6 25.84 ? CAO 2AW 303 A 1 HETATM 8 C CAO 2AW . B . D 3 10.475 34.108 3.011 0.2 18.47 ? CAO 2AW 303 A 1 HETATM 9 C CAM 2AW . A . D 3 10.313 33.959 2.317 0.6 25.13 ? CAM 2AW 303 A 1 HETATM 10 C CAM 2AW . B . D 3 11.149 34.504 1.695 0.2 20.43 ? CAM 2AW 303 A 1 HETATM 11 C CAN 2AW . A . D 3 10.544 33.67 0.827 0.6 25.43 ? CAN 2AW 303 A 1 HETATM 12 C CAN 2AW . B . D 3 10.558 33.679 0.551 0.2 21.68 ? CAN 2AW 303 A 1 HETATM 13 C CAP 2AW . A . D 3 9.391 34.223 -0.023 0.6 25.19 ? CAP 2AW 303 A 1 HETATM 14 C CAP 2AW . B . D 3 9.702 34.596 -0.319 0.2 22.85 ? CAP 2AW 303 A 1 HETATM 15 C CAV 2AW . A . D 3 9.379 35.751 -0.031 0.6 26.98 ? CAV 2AW 303 A 1 HETATM 16 C CAV 2AW . B . D 3 9.669 35.982 0.323 0.2 24.64 ? CAV 2AW 303 A 1 HETATM 17 O OAE 2AW . A . D 3 10.176 36.371 -0.736 0.6 28.65 ? OAE 2AW 303 A 1 HETATM 18 O OAE 2AW . B . D 3 10.663 36.709 0.317 0.2 24.6 ? OAE 2AW 303 A 1 HETATM 19 O OAS 2AW . A . D 3 8.439 36.3 0.799 0.6 27.62 ? OAS 2AW 303 A 1 HETATM 20 O OAS 2AW . B . D 3 8.488 36.319 0.898 0.2 25.69 ? OAS 2AW 303 A 1 HETATM 21 C CG1 2AW . A . D 3 8.494 37.714 1.043 0.6 28.22 ? CG1 2AW 303 A 1 HETATM 22 C CG1 2AW . B . D 3 8.488 37.732 1.06 0.2 27.73 ? CG1 2AW 303 A 1 HETATM 23 C CB 2AW . . . D 3 7.313 38.169 1.924 0.8 27.82 ? CB 2AW 303 A 1 HETATM 24 C CG2 2AW . . . D 3 6.009 38.127 1.118 0.8 29.02 ? CG2 2AW 303 A 1 HETATM 25 S SAX 2AW . . . D 3 7.615 40.012 2.452 0.8 32.89 ? SAX 2AW 303 A 1 HETATM 26 O OAF 2AW . . . D 3 8.179 40.7 1.217 0.8 35.28 ? OAF 2AW 303 A 1 HETATM 27 O OAG 2AW . . . D 3 8.701 40.045 3.527 0.8 31.12 ? OAG 2AW 303 A 1 HETATM 28 C CA 2AW . . . D 3 7.196 37.28 3.184 0.8 28.01 ? CA 2AW 303 A 1 HETATM 29 C C 2AW . . . D 3 6.041 37.764 4.076 0.8 28.05 ? C 2AW 303 A 1 HETATM 30 O OXT 2AW . . . D 3 6.253 38.75 4.827 0.8 28.96 ? OXT 2AW 303 A 1 HETATM 31 O O 2AW . . . D 3 4.964 37.138 4 0.8 29.06 ? O 2AW 303 A 1 HETATM 32 N N 2AW . . . D 3 8.447 37.352 3.957 0.8 25.93 ? N 2AW 303 A 1 HETATM 33 C CAL 2AW . . . D 3 8.795 36.361 4.767 0.8 24.23 ? CAL 2AW 303 A 1 HETATM 34 C CAK 2AW . . . D 3 7.953 35.123 4.811 0.8 20.83 ? CAK 2AW 303 A 1 HETATM 35 C CAJ 2AW . . . D 3 8.519 34.063 5.733 0.8 18.64 ? CAJ 2AW 303 A 1 HETATM 36 O OAB 2AW . . . D 3 9.524 34.201 6.419 0.8 14.18 ? OAB 2AW 303 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 36 #