data_4MBI # _model_server_result.job_id ly1IJP5CBygogR-woFy53A _model_server_result.datetime_utc '2025-07-13 17:42:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4mbi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 4MBI # _exptl.entry_id 4MBI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 271.321 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "N,N-dimethyl-N'-[3-(1H-pyrazol-4-yl)pyrazolo[1,5-a]pyrimidin-5-yl]ethane-1,2-diamine" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4MBI _cell.length_a 97.877 _cell.length_b 97.877 _cell.length_c 80.625 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4MBI _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C13 H17 N7' _chem_comp.formula_weight 271.321 _chem_comp.id 26K _chem_comp.mon_nstd_flag . _chem_comp.name "N,N-dimethyl-N'-[3-(1H-pyrazol-4-yl)pyrazolo[1,5-a]pyrimidin-5-yl]ethane-1,2-diamine" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 N1 26K sing 1 n n N1 C2 26K sing 2 n n N1 C3 26K sing 3 n n C4 C3 26K sing 4 n n C4 N2 26K sing 5 n n N2 C5 26K sing 6 n n C5 C6 26K sing 7 n y C5 N7 26K doub 8 n y C6 C7 26K doub 9 n y N7 C8 26K sing 10 n y C7 N3 26K sing 11 n y C8 N3 26K sing 12 n y C8 C9 26K doub 13 n y N3 N6 26K sing 14 n y C12 C10 26K doub 15 n y C12 N5 26K sing 16 n y N6 C13 26K doub 17 n y C9 C10 26K sing 18 n n C9 C13 26K sing 19 n y C10 C11 26K sing 20 n y N5 N4 26K sing 21 n y C11 N4 26K doub 22 n y C4 H2 26K sing 23 n n C4 H3 26K sing 24 n n C6 H4 26K sing 25 n n C7 H5 26K sing 26 n n C13 H6 26K sing 27 n n C2 H7 26K sing 28 n n C2 H8 26K sing 29 n n C2 H9 26K sing 30 n n C1 H10 26K sing 31 n n C1 H11 26K sing 32 n n C1 H12 26K sing 33 n n C3 H13 26K sing 34 n n C3 H14 26K sing 35 n n N2 H15 26K sing 36 n n C12 H16 26K sing 37 n n N5 H17 26K sing 38 n n C11 H18 26K sing 39 n n # _atom_sites.entry_id 4MBI _atom_sites.fract_transf_matrix[1][1] 0.010217 _atom_sites.fract_transf_matrix[1][2] 0.005899 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011797 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012403 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 26K A 1 401 1 26K LIG . C 3 HOH A 1 501 1 HOH HOH . C 3 HOH A 2 502 2 HOH HOH . C 3 HOH A 3 503 3 HOH HOH . C 3 HOH A 4 504 4 HOH HOH . C 3 HOH A 5 505 5 HOH HOH . C 3 HOH A 6 506 6 HOH HOH . C 3 HOH A 7 507 8 HOH HOH . C 3 HOH A 8 508 9 HOH HOH . C 3 HOH A 9 509 10 HOH HOH . C 3 HOH A 10 510 11 HOH HOH . C 3 HOH A 11 511 12 HOH HOH . C 3 HOH A 12 512 13 HOH HOH . C 3 HOH A 13 513 14 HOH HOH . C 3 HOH A 14 514 15 HOH HOH . C 3 HOH A 15 515 16 HOH HOH . C 3 HOH A 16 516 17 HOH HOH . C 3 HOH A 17 517 18 HOH HOH . C 3 HOH A 18 518 19 HOH HOH . C 3 HOH A 19 519 20 HOH HOH . C 3 HOH A 20 520 21 HOH HOH . C 3 HOH A 21 521 22 HOH HOH . C 3 HOH A 22 522 23 HOH HOH . C 3 HOH A 23 523 24 HOH HOH . C 3 HOH A 24 524 25 HOH HOH . C 3 HOH A 25 525 26 HOH HOH . C 3 HOH A 26 526 27 HOH HOH . C 3 HOH A 27 527 28 HOH HOH . C 3 HOH A 28 528 29 HOH HOH . C 3 HOH A 29 529 30 HOH HOH . C 3 HOH A 30 530 31 HOH HOH . C 3 HOH A 31 531 32 HOH HOH . C 3 HOH A 32 532 33 HOH HOH . C 3 HOH A 33 533 34 HOH HOH . C 3 HOH A 34 534 35 HOH HOH . C 3 HOH A 35 535 36 HOH HOH . C 3 HOH A 36 536 37 HOH HOH . C 3 HOH A 37 537 38 HOH HOH . C 3 HOH A 38 538 39 HOH HOH . C 3 HOH A 39 539 40 HOH HOH . C 3 HOH A 40 540 41 HOH HOH . C 3 HOH A 41 541 42 HOH HOH . C 3 HOH A 42 542 43 HOH HOH . C 3 HOH A 43 543 44 HOH HOH . C 3 HOH A 44 544 45 HOH HOH . C 3 HOH A 45 545 46 HOH HOH . C 3 HOH A 46 546 47 HOH HOH . C 3 HOH A 47 547 48 HOH HOH . C 3 HOH A 48 548 49 HOH HOH . C 3 HOH A 49 549 50 HOH HOH . C 3 HOH A 50 550 51 HOH HOH . C 3 HOH A 51 551 52 HOH HOH . C 3 HOH A 52 552 53 HOH HOH . C 3 HOH A 53 553 54 HOH HOH . C 3 HOH A 54 554 55 HOH HOH . C 3 HOH A 55 555 56 HOH HOH . C 3 HOH A 56 556 57 HOH HOH . C 3 HOH A 57 557 58 HOH HOH . C 3 HOH A 58 558 59 HOH HOH . C 3 HOH A 59 559 60 HOH HOH . C 3 HOH A 60 560 61 HOH HOH . C 3 HOH A 61 561 62 HOH HOH . C 3 HOH A 62 562 63 HOH HOH . C 3 HOH A 63 563 64 HOH HOH . C 3 HOH A 64 564 65 HOH HOH . C 3 HOH A 65 565 66 HOH HOH . C 3 HOH A 66 566 67 HOH HOH . C 3 HOH A 67 567 68 HOH HOH . C 3 HOH A 68 568 69 HOH HOH . C 3 HOH A 69 569 70 HOH HOH . C 3 HOH A 70 570 71 HOH HOH . C 3 HOH A 71 571 72 HOH HOH . C 3 HOH A 72 572 73 HOH HOH . C 3 HOH A 73 573 74 HOH HOH . C 3 HOH A 74 574 75 HOH HOH . C 3 HOH A 75 575 76 HOH HOH . C 3 HOH A 76 576 77 HOH HOH . C 3 HOH A 77 577 78 HOH HOH . C 3 HOH A 78 578 79 HOH HOH . C 3 HOH A 79 579 80 HOH HOH . C 3 HOH A 80 580 81 HOH HOH . C 3 HOH A 81 581 82 HOH HOH . C 3 HOH A 82 582 83 HOH HOH . C 3 HOH A 83 583 84 HOH HOH . C 3 HOH A 84 584 85 HOH HOH . C 3 HOH A 85 585 86 HOH HOH . C 3 HOH A 86 586 87 HOH HOH . C 3 HOH A 87 587 88 HOH HOH . C 3 HOH A 88 588 89 HOH HOH . C 3 HOH A 89 589 90 HOH HOH . C 3 HOH A 90 590 91 HOH HOH . C 3 HOH A 91 591 92 HOH HOH . C 3 HOH A 92 592 93 HOH HOH . C 3 HOH A 93 593 94 HOH HOH . C 3 HOH A 94 594 95 HOH HOH . C 3 HOH A 95 595 96 HOH HOH . C 3 HOH A 96 596 97 HOH HOH . C 3 HOH A 97 597 98 HOH HOH . C 3 HOH A 98 598 99 HOH HOH . C 3 HOH A 99 599 100 HOH HOH . C 3 HOH A 100 600 101 HOH HOH . C 3 HOH A 101 601 102 HOH HOH . C 3 HOH A 102 602 103 HOH HOH . C 3 HOH A 103 603 107 HOH HOH . C 3 HOH A 104 604 109 HOH HOH . C 3 HOH A 105 605 110 HOH HOH . C 3 HOH A 106 606 111 HOH HOH . C 3 HOH A 107 607 112 HOH HOH . C 3 HOH A 108 608 113 HOH HOH . C 3 HOH A 109 609 114 HOH HOH . C 3 HOH A 110 610 115 HOH HOH . C 3 HOH A 111 611 116 HOH HOH . C 3 HOH A 112 612 117 HOH HOH . C 3 HOH A 113 613 118 HOH HOH . C 3 HOH A 114 614 119 HOH HOH . C 3 HOH A 115 615 120 HOH HOH . C 3 HOH A 116 616 121 HOH HOH . C 3 HOH A 117 617 123 HOH HOH . C 3 HOH A 118 618 124 HOH HOH . C 3 HOH A 119 619 125 HOH HOH . C 3 HOH A 120 620 126 HOH HOH . C 3 HOH A 121 621 127 HOH HOH . C 3 HOH A 122 622 128 HOH HOH . C 3 HOH A 123 623 129 HOH HOH . C 3 HOH A 124 624 130 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 26K . . . B 2 23.587 32.963 -5.026 1 32.89 ? N1 26K 401 A 1 HETATM 2 N N3 26K . . . B 2 23.66 38.004 -0.354 1 24.18 ? N3 26K 401 A 1 HETATM 3 C C4 26K . . . B 2 22.244 34.811 -4.075 1 29.49 ? C4 26K 401 A 1 HETATM 4 C C5 26K . . . B 2 22.902 36.794 -2.699 1 25.52 ? C5 26K 401 A 1 HETATM 5 C C6 26K . . . B 2 23.355 38.133 -2.67 1 22.99 ? C6 26K 401 A 1 HETATM 6 C C7 26K . . . B 2 23.75 38.725 -1.476 1 22.32 ? C7 26K 401 A 1 HETATM 7 C C8 26K . . . B 2 23.212 36.737 -0.388 1 22.84 ? C8 26K 401 A 1 HETATM 8 C C10 26K . . . B 2 22.917 35.048 1.424 1 20.54 ? C10 26K 401 A 1 HETATM 9 C C13 26K . . . B 2 23.761 37.35 1.753 1 23.03 ? C13 26K 401 A 1 HETATM 10 C C2 26K . . . B 2 23.734 31.632 -4.447 1 35.92 ? C2 26K 401 A 1 HETATM 11 C C1 26K . . . B 2 22.374 33.007 -5.824 1 34.51 ? C1 26K 401 A 1 HETATM 12 C C3 26K . . . B 2 23.529 33.972 -3.99 1 29.53 ? C3 26K 401 A 1 HETATM 13 N N2 26K . . . B 2 22.552 36.228 -3.889 1 26.45 ? N2 26K 401 A 1 HETATM 14 N N7 26K . . . B 2 22.843 36.09 -1.53 1 22.56 ? N7 26K 401 A 1 HETATM 15 C C9 26K . . . B 2 23.276 36.322 0.939 1 20.41 ? C9 26K 401 A 1 HETATM 16 C C12 26K . . . B 2 22.443 33.993 0.643 1 17.19 ? C12 26K 401 A 1 HETATM 17 N N5 26K . . . B 2 22.206 32.966 1.488 1 18.53 ? N5 26K 401 A 1 HETATM 18 N N4 26K . . . B 2 22.543 33.405 2.773 1 22.59 ? N4 26K 401 A 1 HETATM 19 C C11 26K . . . B 2 22.99 34.694 2.767 1 22.25 ? C11 26K 401 A 1 HETATM 20 N N6 26K . . . B 2 24.02 38.439 0.936 1 23.81 ? N6 26K 401 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 341 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 20 #