data_4MBK
#
_model_server_result.job_id            tLxCenMWtOE_Ae1OHEv4Cw 
_model_server_result.datetime_utc      '2024-11-14 16:17:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4mbk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":303}' 
#
_entry.id    4MBK 
#
_exptl.entry_id    4MBK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              365.356 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (3R)-4-[(4-CARBOXYBUTANOYL)OXY]-N-[(1E)-3-OXOPROP-1-EN-1-YL]-3-SULFINO-D-VALINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4MBK 
_cell.length_a            49.212 
_cell.length_b            55.361 
_cell.length_c            83.325 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4MBK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 52 A CYS 77 1_555 A SG CYS 98 A CYS 123 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.012 ? 
covale ? covale1 A OG SER 45 A SER 70 1_555 D C7 SA2 . A SA2 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.68 ? 
#
_chem_comp.formula           'C13 H19 N O9 S' 
_chem_comp.formula_weight    365.356 
_chem_comp.id                SA2 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (3R)-4-[(4-CARBOXYBUTANOYL)OXY]-N-[(1E)-3-OXOPROP-1-EN-1-YL]-3-SULFINO-D-VALINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '4-AZA-5-CARBOXY-6-SULFENATE-6-METHYL-8-OXA-9-OXO-TRIS-2-TRANS-DECENEDIOIC ACID' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O23 C20 SA2 sing 358 n n 
O23 HO23 SA2 sing 359 n n 
C20 O22 SA2 doub 360 n n 
C20 C19 SA2 sing 361 n n 
C19 C18 SA2 sing 362 n n 
C19 H191 SA2 sing 363 n n 
C19 H192 SA2 sing 364 n n 
C18 C17 SA2 sing 365 n n 
C18 H181 SA2 sing 366 n n 
C18 H182 SA2 sing 367 n n 
C17 C16 SA2 sing 368 n n 
C17 H171 SA2 sing 369 n n 
C17 H172 SA2 sing 370 n n 
C16 O24 SA2 doub 371 n n 
C16 O15 SA2 sing 372 n n 
O15 C14 SA2 sing 373 n n 
C14 C2 SA2 sing 374 n n 
C14 H141 SA2 sing 375 n n 
C14 H142 SA2 sing 376 n n 
C2 S1 SA2 sing 377 n n 
C2 C21 SA2 sing 378 n n 
C2 C3 SA2 sing 379 n n 
S1 O13 SA2 sing 380 n n 
S1 O12 SA2 doub 381 n n 
O13 HO13 SA2 sing 382 n n 
C21 H211 SA2 sing 383 n n 
C21 H212 SA2 sing 384 n n 
C21 H213 SA2 sing 385 n n 
C3 C9 SA2 sing 386 n n 
C3 N4 SA2 sing 387 n n 
C3 H3 SA2 sing 388 n n 
C9 O10 SA2 sing 389 n n 
C9 O11 SA2 doub 390 n n 
O10 HO10 SA2 sing 391 n n 
N4 C5 SA2 sing 392 n n 
N4 HN4 SA2 sing 393 n n 
C5 C6 SA2 doub 394 e n 
C5 H52 SA2 sing 395 n n 
C6 C7 SA2 sing 396 n n 
C6 H62 SA2 sing 397 n n 
C7 O8 SA2 doub 398 n n 
C7 H7 SA2 sing 399 n n 
#
_atom_sites.entry_id                     4MBK 
_atom_sites.fract_transf_matrix[1][1]    0.02032 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018063 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012001 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MA4 A 1 301 400 MA4 MA4 . 
C 2 MA4 A 1 302 400 MA4 MA4 . 
D 3 SA2 A 1 303 611 SA2 SA2 . 
E 4 HOH A 1 401 1 HOH HOH . 
E 4 HOH A 2 402 2 HOH HOH . 
E 4 HOH A 3 403 3 HOH HOH . 
E 4 HOH A 4 404 4 HOH HOH . 
E 4 HOH A 5 405 6 HOH HOH . 
E 4 HOH A 6 406 8 HOH HOH . 
E 4 HOH A 7 407 9 HOH HOH . 
E 4 HOH A 8 408 10 HOH HOH . 
E 4 HOH A 9 409 11 HOH HOH . 
E 4 HOH A 10 410 12 HOH HOH . 
E 4 HOH A 11 411 13 HOH HOH . 
E 4 HOH A 12 412 14 HOH HOH . 
E 4 HOH A 13 413 15 HOH HOH . 
E 4 HOH A 14 414 17 HOH HOH . 
E 4 HOH A 15 415 18 HOH HOH . 
E 4 HOH A 16 416 19 HOH HOH . 
E 4 HOH A 17 417 20 HOH HOH . 
E 4 HOH A 18 418 22 HOH HOH . 
E 4 HOH A 19 419 23 HOH HOH . 
E 4 HOH A 20 420 24 HOH HOH . 
E 4 HOH A 21 421 25 HOH HOH . 
E 4 HOH A 22 422 26 HOH HOH . 
E 4 HOH A 23 423 27 HOH HOH . 
E 4 HOH A 24 424 28 HOH HOH . 
E 4 HOH A 25 425 29 HOH HOH . 
E 4 HOH A 26 426 30 HOH HOH . 
E 4 HOH A 27 427 31 HOH HOH . 
E 4 HOH A 28 428 32 HOH HOH . 
E 4 HOH A 29 429 33 HOH HOH . 
E 4 HOH A 30 430 34 HOH HOH . 
E 4 HOH A 31 431 35 HOH HOH . 
E 4 HOH A 32 432 36 HOH HOH . 
E 4 HOH A 33 433 37 HOH HOH . 
E 4 HOH A 34 434 38 HOH HOH . 
E 4 HOH A 35 435 39 HOH HOH . 
E 4 HOH A 36 436 40 HOH HOH . 
E 4 HOH A 37 437 41 HOH HOH . 
E 4 HOH A 38 438 42 HOH HOH . 
E 4 HOH A 39 439 43 HOH HOH . 
E 4 HOH A 40 440 44 HOH HOH . 
E 4 HOH A 41 441 45 HOH HOH . 
E 4 HOH A 42 442 46 HOH HOH . 
E 4 HOH A 43 443 47 HOH HOH . 
E 4 HOH A 44 444 48 HOH HOH . 
E 4 HOH A 45 445 49 HOH HOH . 
E 4 HOH A 46 446 50 HOH HOH . 
E 4 HOH A 47 447 51 HOH HOH . 
E 4 HOH A 48 448 52 HOH HOH . 
E 4 HOH A 49 449 53 HOH HOH . 
E 4 HOH A 50 450 54 HOH HOH . 
E 4 HOH A 51 451 55 HOH HOH . 
E 4 HOH A 52 452 56 HOH HOH . 
E 4 HOH A 53 453 58 HOH HOH . 
E 4 HOH A 54 454 59 HOH HOH . 
E 4 HOH A 55 455 60 HOH HOH . 
E 4 HOH A 56 456 61 HOH HOH . 
E 4 HOH A 57 457 63 HOH HOH . 
E 4 HOH A 58 458 64 HOH HOH . 
E 4 HOH A 59 459 65 HOH HOH . 
E 4 HOH A 60 460 66 HOH HOH . 
E 4 HOH A 61 461 67 HOH HOH . 
E 4 HOH A 62 462 68 HOH HOH . 
E 4 HOH A 63 463 70 HOH HOH . 
E 4 HOH A 64 464 72 HOH HOH . 
E 4 HOH A 65 465 73 HOH HOH . 
E 4 HOH A 66 466 74 HOH HOH . 
E 4 HOH A 67 467 75 HOH HOH . 
E 4 HOH A 68 468 76 HOH HOH . 
E 4 HOH A 69 469 78 HOH HOH . 
E 4 HOH A 70 470 79 HOH HOH . 
E 4 HOH A 71 471 80 HOH HOH . 
E 4 HOH A 72 472 81 HOH HOH . 
E 4 HOH A 73 473 83 HOH HOH . 
E 4 HOH A 74 474 84 HOH HOH . 
E 4 HOH A 75 475 85 HOH HOH . 
E 4 HOH A 76 476 86 HOH HOH . 
E 4 HOH A 77 477 87 HOH HOH . 
E 4 HOH A 78 478 88 HOH HOH . 
E 4 HOH A 79 479 89 HOH HOH . 
E 4 HOH A 80 480 90 HOH HOH . 
E 4 HOH A 81 481 91 HOH HOH . 
E 4 HOH A 82 482 92 HOH HOH . 
E 4 HOH A 83 483 94 HOH HOH . 
E 4 HOH A 84 484 95 HOH HOH . 
E 4 HOH A 85 485 96 HOH HOH . 
E 4 HOH A 86 486 97 HOH HOH . 
E 4 HOH A 87 487 98 HOH HOH . 
E 4 HOH A 88 488 99 HOH HOH . 
E 4 HOH A 89 489 100 HOH HOH . 
E 4 HOH A 90 490 101 HOH HOH . 
E 4 HOH A 91 491 102 HOH HOH . 
E 4 HOH A 92 492 103 HOH HOH . 
E 4 HOH A 93 493 104 HOH HOH . 
E 4 HOH A 94 494 105 HOH HOH . 
E 4 HOH A 95 495 106 HOH HOH . 
E 4 HOH A 96 496 107 HOH HOH . 
E 4 HOH A 97 497 108 HOH HOH . 
E 4 HOH A 98 498 109 HOH HOH . 
E 4 HOH A 99 499 110 HOH HOH . 
E 4 HOH A 100 500 111 HOH HOH . 
E 4 HOH A 101 501 113 HOH HOH . 
E 4 HOH A 102 502 114 HOH HOH . 
E 4 HOH A 103 503 115 HOH HOH . 
E 4 HOH A 104 504 116 HOH HOH . 
E 4 HOH A 105 505 117 HOH HOH . 
E 4 HOH A 106 506 118 HOH HOH . 
E 4 HOH A 107 507 119 HOH HOH . 
E 4 HOH A 108 508 120 HOH HOH . 
E 4 HOH A 109 509 121 HOH HOH . 
E 4 HOH A 110 510 123 HOH HOH . 
E 4 HOH A 111 511 124 HOH HOH . 
E 4 HOH A 112 512 125 HOH HOH . 
E 4 HOH A 113 513 126 HOH HOH . 
E 4 HOH A 114 514 127 HOH HOH . 
E 4 HOH A 115 515 128 HOH HOH . 
E 4 HOH A 116 516 129 HOH HOH . 
E 4 HOH A 117 517 130 HOH HOH . 
E 4 HOH A 118 518 131 HOH HOH . 
E 4 HOH A 119 519 132 HOH HOH . 
E 4 HOH A 120 520 133 HOH HOH . 
E 4 HOH A 121 521 134 HOH HOH . 
E 4 HOH A 122 522 135 HOH HOH . 
E 4 HOH A 123 523 136 HOH HOH . 
E 4 HOH A 124 524 137 HOH HOH . 
E 4 HOH A 125 525 138 HOH HOH . 
E 4 HOH A 126 526 139 HOH HOH . 
E 4 HOH A 127 527 143 HOH HOH . 
E 4 HOH A 128 528 148 HOH HOH . 
E 4 HOH A 129 529 149 HOH HOH . 
E 4 HOH A 130 530 151 HOH HOH . 
E 4 HOH A 131 531 152 HOH HOH . 
E 4 HOH A 132 532 153 HOH HOH . 
E 4 HOH A 133 533 155 HOH HOH . 
E 4 HOH A 134 534 156 HOH HOH . 
E 4 HOH A 135 535 157 HOH HOH . 
E 4 HOH A 136 536 158 HOH HOH . 
E 4 HOH A 137 537 159 HOH HOH . 
E 4 HOH A 138 538 160 HOH HOH . 
E 4 HOH A 139 539 161 HOH HOH . 
E 4 HOH A 140 540 162 HOH HOH . 
E 4 HOH A 141 541 164 HOH HOH . 
E 4 HOH A 142 542 165 HOH HOH . 
E 4 HOH A 143 543 166 HOH HOH . 
E 4 HOH A 144 544 167 HOH HOH . 
E 4 HOH A 145 545 168 HOH HOH . 
E 4 HOH A 146 546 169 HOH HOH . 
E 4 HOH A 147 547 170 HOH HOH . 
E 4 HOH A 148 548 171 HOH HOH . 
E 4 HOH A 149 549 172 HOH HOH . 
E 4 HOH A 150 550 173 HOH HOH . 
E 4 HOH A 151 551 175 HOH HOH . 
E 4 HOH A 152 552 176 HOH HOH . 
E 4 HOH A 153 553 177 HOH HOH . 
E 4 HOH A 154 554 179 HOH HOH . 
E 4 HOH A 155 555 180 HOH HOH . 
E 4 HOH A 156 556 181 HOH HOH . 
E 4 HOH A 157 557 183 HOH HOH . 
E 4 HOH A 158 558 184 HOH HOH . 
E 4 HOH A 159 559 185 HOH HOH . 
E 4 HOH A 160 560 186 HOH HOH . 
E 4 HOH A 161 561 1 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O23 SA2 . . . D 3 10.533 32.02 3.413 0.7 41.03 ? O23 SA2 303 A 1 
HETATM 2 C C20 SA2 . . . D 3 11.095 33.094 3.103 0.7 20.39 ? C20 SA2 303 A 1 
HETATM 3 O O22 SA2 . . . D 3 12.252 33.369 3.475 0.7 17.66 ? O22 SA2 303 A 1 
HETATM 4 C C19 SA2 . . . D 3 10.36 34.103 2.266 0.7 26.16 ? C19 SA2 303 A 1 
HETATM 5 C C18 SA2 . . . D 3 10.583 33.775 0.795 0.7 29.12 ? C18 SA2 303 A 1 
HETATM 6 C C17 SA2 . . . D 3 9.488 34.391 -0.064 0.7 31.25 ? C17 SA2 303 A 1 
HETATM 7 C C16 SA2 . . . D 3 9.549 35.888 0.082 0.7 62.37 ? C16 SA2 303 A 1 
HETATM 8 O O24 SA2 . . . D 3 10.505 36.506 -0.367 0.7 29.38 ? O24 SA2 303 A 1 
HETATM 9 O O15 SA2 . . . D 3 8.462 36.559 0.778 0.7 29.01 ? O15 SA2 303 A 1 
HETATM 10 C C14 SA2 . . . D 3 8.536 37.957 1.069 0.7 25.75 ? C14 SA2 303 A 1 
HETATM 11 C C2 SA2 . . . D 3 7.291 38.415 1.809 0.7 21.31 ? C2 SA2 303 A 1 
HETATM 12 S S1 SA2 . . . D 3 7.524 40.177 2.286 0.7 32.9 ? S1 SA2 303 A 1 
HETATM 13 O O13 SA2 . . . D 3 8.939 40.376 2.754 0.7 54.02 ? O13 SA2 303 A 1 
HETATM 14 O O12 SA2 . . . D 3 7.264 41.062 1.097 0.7 55.77 ? O12 SA2 303 A 1 
HETATM 15 C C21 SA2 . . . D 3 6.082 38.294 0.88 0.7 37.5 ? C21 SA2 303 A 1 
HETATM 16 C C3 SA2 . . . D 3 7.065 37.555 3.067 0.7 34.55 ? C3 SA2 303 A 1 
HETATM 17 C C9 SA2 . . . D 3 5.792 37.904 3.792 0.7 35.1 ? C9 SA2 303 A 1 
HETATM 18 O O10 SA2 . . . D 3 5.797 38.748 4.715 0.7 28.33 ? O10 SA2 303 A 1 
HETATM 19 O O11 SA2 . . . D 3 4.73 37.328 3.481 0.7 41.13 ? O11 SA2 303 A 1 
HETATM 20 N N4 SA2 . . . D 3 8.173 37.684 4.017 0.7 24.41 ? N4 SA2 303 A 1 
HETATM 21 C C5 SA2 . . . D 3 8.592 36.4 4.533 0.7 19.06 ? C5 SA2 303 A 1 
HETATM 22 C C6 SA2 . . . D 3 7.762 35.545 4.748 0.7 18.75 ? C6 SA2 303 A 1 
HETATM 23 C C7 SA2 . . . D 3 8.126 34.386 5.643 0.7 19.21 ? C7 SA2 303 A 1 
HETATM 24 O O8 SA2 . . . D 3 9.18 34.379 6.232 0.7 9.62 ? O8 SA2 303 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           343 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           24 
#