data_4MBN # _model_server_result.job_id Q5V4NmumpQbb9Jpfr1rG0w _model_server_result.datetime_utc '2024-11-29 22:39:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4mbn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":225}' # _entry.id 4MBN # _exptl.entry_id 4MBN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.86 _cell.angle_gamma 90 _cell.entry_id 4MBN _cell.length_a 64.56 _cell.length_b 30.97 _cell.length_c 34.86 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4MBN _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 93 A HIS 93 1_555 D FE HEM . A HEM 225 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? metalc ? metalc2 D FE HEM . A HEM 225 1_555 E O HOH . A HOH 226 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 116 n n CHA C4D HEM doub 117 n n CHA HHA HEM sing 118 n n CHB C4A HEM sing 119 n n CHB C1B HEM doub 120 n n CHB HHB HEM sing 121 n n CHC C4B HEM sing 122 n n CHC C1C HEM doub 123 n n CHC HHC HEM sing 124 n n CHD C4C HEM doub 125 n n CHD C1D HEM sing 126 n n CHD HHD HEM sing 127 n n C1A C2A HEM doub 128 n y C1A NA HEM sing 129 n y C2A C3A HEM sing 130 n y C2A CAA HEM sing 131 n n C3A C4A HEM doub 132 n y C3A CMA HEM sing 133 n n C4A NA HEM sing 134 n y CMA HMA HEM sing 135 n n CMA HMAA HEM sing 136 n n CMA HMAB HEM sing 137 n n CAA CBA HEM sing 138 n n CAA HAA HEM sing 139 n n CAA HAAA HEM sing 140 n n CBA CGA HEM sing 141 n n CBA HBA HEM sing 142 n n CBA HBAA HEM sing 143 n n CGA O1A HEM doub 144 n n CGA O2A HEM sing 145 n n C1B C2B HEM sing 146 n n C1B NB HEM sing 147 n n C2B C3B HEM doub 148 n n C2B CMB HEM sing 149 n n C3B C4B HEM sing 150 n n C3B CAB HEM sing 151 n n C4B NB HEM doub 152 n n CMB HMB HEM sing 153 n n CMB HMBA HEM sing 154 n n CMB HMBB HEM sing 155 n n CAB CBB HEM doub 156 n n CAB HAB HEM sing 157 n n CBB HBB HEM sing 158 n n CBB HBBA HEM sing 159 n n C1C C2C HEM sing 160 n y C1C NC HEM sing 161 n y C2C C3C HEM doub 162 n y C2C CMC HEM sing 163 n n C3C C4C HEM sing 164 n y C3C CAC HEM sing 165 n n C4C NC HEM sing 166 n y CMC HMC HEM sing 167 n n CMC HMCA HEM sing 168 n n CMC HMCB HEM sing 169 n n CAC CBC HEM doub 170 n n CAC HAC HEM sing 171 n n CBC HBC HEM sing 172 n n CBC HBCA HEM sing 173 n n C1D C2D HEM sing 174 n n C1D ND HEM doub 175 n n C2D C3D HEM doub 176 n n C2D CMD HEM sing 177 n n C3D C4D HEM sing 178 n n C3D CAD HEM sing 179 n n C4D ND HEM sing 180 n n CMD HMD HEM sing 181 n n CMD HMDA HEM sing 182 n n CMD HMDB HEM sing 183 n n CAD CBD HEM sing 184 n n CAD HAD HEM sing 185 n n CAD HADA HEM sing 186 n n CBD CGD HEM sing 187 n n CBD HBD HEM sing 188 n n CBD HBDA HEM sing 189 n n CGD O1D HEM doub 190 n n CGD O2D HEM sing 191 n n O2A H2A HEM sing 192 n n O2D H2D HEM sing 193 n n FE NA HEM sing 194 n n FE NB HEM sing 195 n n FE NC HEM sing 196 n n FE ND HEM sing 197 n n # _atom_sites.entry_id 4MBN _atom_sites.fract_transf_matrix[1][1] 0.015489 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004401 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.032289 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.029821 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 216 216 SO4 SO4 . C 2 SO4 A 1 224 224 SO4 SO4 . D 3 HEM A 1 225 130 HEM HEM . E 4 HOH A 1 226 130 HOH HEM . E 4 HOH A 2 227 1 HOH HOH . E 4 HOH A 3 228 2 HOH HOH . E 4 HOH A 4 229 3 HOH HOH . E 4 HOH A 5 230 4 HOH HOH . E 4 HOH A 6 231 5 HOH HOH . E 4 HOH A 7 232 7 HOH HOH . E 4 HOH A 8 233 8 HOH HOH . E 4 HOH A 9 234 9 HOH HOH . E 4 HOH A 10 235 10 HOH HOH . E 4 HOH A 11 236 11 HOH HOH . E 4 HOH A 12 237 12 HOH HOH . E 4 HOH A 13 238 13 HOH HOH . E 4 HOH A 14 239 14 HOH HOH . E 4 HOH A 15 240 15 HOH HOH . E 4 HOH A 16 241 16 HOH HOH . E 4 HOH A 17 242 17 HOH HOH . E 4 HOH A 18 243 18 HOH HOH . E 4 HOH A 19 244 19 HOH HOH . E 4 HOH A 20 245 20 HOH HOH . E 4 HOH A 21 246 22 HOH HOH . E 4 HOH A 22 247 23 HOH HOH . E 4 HOH A 23 248 24 HOH HOH . E 4 HOH A 24 249 25 HOH HOH . E 4 HOH A 25 250 26 HOH HOH . E 4 HOH A 26 251 27 HOH HOH . E 4 HOH A 27 252 28 HOH HOH . E 4 HOH A 28 253 29 HOH HOH . E 4 HOH A 29 254 30 HOH HOH . E 4 HOH A 30 255 31 HOH HOH . E 4 HOH A 31 256 32 HOH HOH . E 4 HOH A 32 257 33 HOH HOH . E 4 HOH A 33 258 34 HOH HOH . E 4 HOH A 34 259 35 HOH HOH . E 4 HOH A 35 260 36 HOH HOH . E 4 HOH A 36 261 37 HOH HOH . E 4 HOH A 37 262 38 HOH HOH . E 4 HOH A 38 263 39 HOH HOH . E 4 HOH A 39 264 40 HOH HOH . E 4 HOH A 40 265 41 HOH HOH . E 4 HOH A 41 266 42 HOH HOH . E 4 HOH A 42 267 43 HOH HOH . E 4 HOH A 43 268 44 HOH HOH . E 4 HOH A 44 269 45 HOH HOH . E 4 HOH A 45 270 46 HOH HOH . E 4 HOH A 46 271 47 HOH HOH . E 4 HOH A 47 272 48 HOH HOH . E 4 HOH A 48 273 49 HOH HOH . E 4 HOH A 49 274 50 HOH HOH . E 4 HOH A 50 275 52 HOH HOH . E 4 HOH A 51 276 53 HOH HOH . E 4 HOH A 52 277 54 HOH HOH . E 4 HOH A 53 278 55 HOH HOH . E 4 HOH A 54 279 57 HOH HOH . E 4 HOH A 55 280 58 HOH HOH . E 4 HOH A 56 281 59 HOH HOH . E 4 HOH A 57 282 60 HOH HOH . E 4 HOH A 58 283 61 HOH HOH . E 4 HOH A 59 284 62 HOH HOH . E 4 HOH A 60 285 63 HOH HOH . E 4 HOH A 61 286 64 HOH HOH . E 4 HOH A 62 287 65 HOH HOH . E 4 HOH A 63 288 66 HOH HOH . E 4 HOH A 64 289 67 HOH HOH . E 4 HOH A 65 290 68 HOH HOH . E 4 HOH A 66 291 70 HOH HOH . E 4 HOH A 67 292 71 HOH HOH . E 4 HOH A 68 293 72 HOH HOH . E 4 HOH A 69 294 73 HOH HOH . E 4 HOH A 70 295 74 HOH HOH . E 4 HOH A 71 296 75 HOH HOH . E 4 HOH A 72 297 76 HOH HOH . E 4 HOH A 73 298 77 HOH HOH . E 4 HOH A 74 299 78 HOH HOH . E 4 HOH A 75 300 79 HOH HOH . E 4 HOH A 76 301 80 HOH HOH . E 4 HOH A 77 302 81 HOH HOH . E 4 HOH A 78 303 82 HOH HOH . E 4 HOH A 79 304 83 HOH HOH . E 4 HOH A 80 305 84 HOH HOH . E 4 HOH A 81 306 85 HOH HOH . E 4 HOH A 82 307 90 HOH HOH . E 4 HOH A 83 308 91 HOH HOH . E 4 HOH A 84 309 92 HOH HOH . E 4 HOH A 85 310 93 HOH HOH . E 4 HOH A 86 311 94 HOH HOH . E 4 HOH A 87 312 95 HOH HOH . E 4 HOH A 88 313 96 HOH HOH . E 4 HOH A 89 314 97 HOH HOH . E 4 HOH A 90 315 98 HOH HOH . E 4 HOH A 91 316 99 HOH HOH . E 4 HOH A 92 317 100 HOH HOH . E 4 HOH A 93 318 101 HOH HOH . E 4 HOH A 94 319 102 HOH HOH . E 4 HOH A 95 320 103 HOH HOH . E 4 HOH A 96 321 104 HOH HOH . E 4 HOH A 97 322 105 HOH HOH . E 4 HOH A 98 323 106 HOH HOH . E 4 HOH A 99 324 107 HOH HOH . E 4 HOH A 100 325 108 HOH HOH . E 4 HOH A 101 326 109 HOH HOH . E 4 HOH A 102 327 110 HOH HOH . E 4 HOH A 103 328 111 HOH HOH . E 4 HOH A 104 329 112 HOH HOH . E 4 HOH A 105 330 113 HOH HOH . E 4 HOH A 106 331 114 HOH HOH . E 4 HOH A 107 332 115 HOH HOH . E 4 HOH A 108 333 116 HOH HOH . E 4 HOH A 109 334 117 HOH HOH . E 4 HOH A 110 335 118 HOH HOH . E 4 HOH A 111 336 119 HOH HOH . E 4 HOH A 112 337 120 HOH HOH . E 4 HOH A 113 338 121 HOH HOH . E 4 HOH A 114 339 122 HOH HOH . E 4 HOH A 115 340 123 HOH HOH . E 4 HOH A 116 341 124 HOH HOH . E 4 HOH A 117 342 125 HOH HOH . E 4 HOH A 118 343 126 HOH HOH . E 4 HOH A 119 344 127 HOH HOH . E 4 HOH A 120 345 128 HOH HOH . E 4 HOH A 121 346 129 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . D 3 16.173 31.159 5.11 1 8.33 ? CHA HEM 225 A 1 HETATM 2 C CHB HEM . . . D 3 14.012 28.023 8.117 1 11.37 ? CHB HEM 225 A 1 HETATM 3 C CHC HEM . . . D 3 13.635 24.848 4.458 1 11.7 ? CHC HEM 225 A 1 HETATM 4 C CHD HEM . . . D 3 15.728 28.007 1.468 1 14.07 ? CHD HEM 225 A 1 HETATM 5 C C1A HEM . . . D 3 15.607 30.594 6.24 1 11.16 ? C1A HEM 225 A 1 HETATM 6 C C2A HEM . . . D 3 15.519 31.231 7.492 1 11.01 ? C2A HEM 225 A 1 HETATM 7 C C3A HEM . . . D 3 14.915 30.325 8.369 1 11.34 ? C3A HEM 225 A 1 HETATM 8 C C4A HEM . . . D 3 14.615 29.165 7.625 1 11.56 ? C4A HEM 225 A 1 HETATM 9 C CMA HEM . . . D 3 14.588 30.556 9.825 1 10.87 ? CMA HEM 225 A 1 HETATM 10 C CAA HEM . . . D 3 15.94 32.655 7.787 1 14.72 ? CAA HEM 225 A 1 HETATM 11 C CBA HEM . . . D 3 14.783 33.667 7.885 1 13.08 ? CBA HEM 225 A 1 HETATM 12 C CGA HEM . . . D 3 13.914 33.609 6.608 1 13.7 ? CGA HEM 225 A 1 HETATM 13 O O1A HEM . . . D 3 12.703 33.76 6.683 1 15.34 ? O1A HEM 225 A 1 HETATM 14 O O2A HEM . . . D 3 14.421 33.765 5.408 1 14.24 ? O2A HEM 225 A 1 HETATM 15 C C1B HEM . . . D 3 13.727 26.891 7.38 1 10.2 ? C1B HEM 225 A 1 HETATM 16 C C2B HEM . . . D 3 13.174 25.739 7.899 1 11.46 ? C2B HEM 225 A 1 HETATM 17 C C3B HEM . . . D 3 13.103 24.814 6.825 1 14.39 ? C3B HEM 225 A 1 HETATM 18 C C4B HEM . . . D 3 13.553 25.457 5.697 1 11.47 ? C4B HEM 225 A 1 HETATM 19 C CMB HEM . . . D 3 12.789 25.592 9.367 1 10.7 ? CMB HEM 225 A 1 HETATM 20 C CAB HEM . . . D 3 12.75 23.469 6.822 1 11.72 ? CAB HEM 225 A 1 HETATM 21 C CBB HEM . . . D 3 12.495 22.729 7.973 1 11.72 ? CBB HEM 225 A 1 HETATM 22 C C1C HEM . . . D 3 14.156 25.411 3.314 1 12.01 ? C1C HEM 225 A 1 HETATM 23 C C2C HEM . . . D 3 14.337 24.749 2.091 1 12.93 ? C2C HEM 225 A 1 HETATM 24 C C3C HEM . . . D 3 14.989 25.682 1.234 1 14.89 ? C3C HEM 225 A 1 HETATM 25 C C4C HEM . . . D 3 15.119 26.867 1.958 1 12.4 ? C4C HEM 225 A 1 HETATM 26 C CMC HEM . . . D 3 13.919 23.3 1.835 1 10.37 ? CMC HEM 225 A 1 HETATM 27 C CAC HEM . . . D 3 15.468 25.512 -0.068 1 13.42 ? CAC HEM 225 A 1 HETATM 28 C CBC HEM . . . D 3 15.37 24.286 -0.769 1 12.17 ? CBC HEM 225 A 1 HETATM 29 C C1D HEM . . . D 3 16.025 29.132 2.199 1 15.1 ? C1D HEM 225 A 1 HETATM 30 C C2D HEM . . . D 3 16.73 30.225 1.696 1 12.57 ? C2D HEM 225 A 1 HETATM 31 C C3D HEM . . . D 3 16.926 31.103 2.753 1 14.74 ? C3D HEM 225 A 1 HETATM 32 C C4D HEM . . . D 3 16.255 30.568 3.864 1 12.66 ? C4D HEM 225 A 1 HETATM 33 C CMD HEM . . . D 3 17.178 30.394 0.252 1 9.06 ? CMD HEM 225 A 1 HETATM 34 C CAD HEM . . . D 3 17.783 32.355 2.704 1 12.53 ? CAD HEM 225 A 1 HETATM 35 C CBD HEM . . . D 3 19.272 32.024 2.847 1 12.19 ? CBD HEM 225 A 1 HETATM 36 C CGD HEM . . . D 3 20.113 33.285 2.739 1 11.83 ? CGD HEM 225 A 1 HETATM 37 O O1D HEM . . . D 3 20.376 33.757 1.628 1 13.11 ? O1D HEM 225 A 1 HETATM 38 O O2D HEM . . . D 3 20.346 34.014 3.797 1 13.75 ? O2D HEM 225 A 1 HETATM 39 N NA HEM . . . D 3 15.026 29.349 6.33 1 11.73 ? NA HEM 225 A 1 HETATM 40 N NB HEM . . . D 3 13.952 26.722 6.032 1 11.16 ? NB HEM 225 A 1 HETATM 41 N NC HEM . . . D 3 14.651 26.676 3.235 1 12.4 ? NC HEM 225 A 1 HETATM 42 N ND HEM . . . D 3 15.735 29.346 3.53 1 10.84 ? ND HEM 225 A 1 HETATM 43 FE FE HEM . . . D 3 14.681 28.078 4.808 1 10.77 ? FE HEM 225 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 43 #